Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CBX3P9 Gene

Subcategory (RNA class) for CBX3P9 Gene

lncRNA

Aliases for CBX3P9 Gene

  • Chromobox 3 Pseudogene 9 2 3 5
  • Chromobox Homolog 3 Pseudogene 9 2

External Ids for CBX3P9 Gene

ORGUL Members for CBX3P9 Gene

Previous GeneCards Identifiers for CBX3P9 Gene

  • GC06M116776

Summaries for CBX3P9 Gene

GeneCards Summary for CBX3P9 Gene

CBX3P9 (Chromobox 3 Pseudogene 9) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CBX3P9 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for CBX3P9

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CBX3P9 Gene

Genomics for CBX3P9 Gene

Regulatory Elements for CBX3P9 Gene

Enhancers for CBX3P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F116570 0.7 ENCODE 14.3 -118.3 -118275 3.0 HDGF ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 RWDD1 ENSG00000240050 RSPH4A CBX3P9 ENSG00000237021 FAM162B FAM26E
GH06F116409 1.1 FANTOM5 Ensembl ENCODE 12.1 +42.5 42501 3.1 TBP KLF1 MXI1 RBBP5 RELA ZNF316 CBX5 POLR2A EED ETV6 FAM26F DSE CBX3P9 KRT18P22 ENSG00000244158 FAM26D ENSG00000234117 RWDD1 PIR34878 PIR33476
GH06F116381 0.2 ENCODE 11.6 +72.0 72002 0.3 CTBP1 FOS PRDM1 CBX3P9 FAM26F KRT18P22 ENSG00000244158 FAM26D ENSG00000234117 TRAPPC3L PIR33476 PIR34878
GH06F116382 0.5 ENCODE 11.6 +70.7 70721 1.2 KLF1 PKNOX1 ZNF384 SETDB1 CBX3P9 FAM26F KRT18P22 ENSG00000244158 FAM26D ENSG00000234117 TRAPPC3L PIR33476 PIR34878
GH06F116384 1.3 FANTOM5 Ensembl ENCODE 11.6 +64.2 64209 9.9 PKNOX1 WRNIP1 ZNF2 RAD21 ZNF366 ETV6 FOS CREM ZNF263 YY2 DSE FAM26F FAM26D CBX3P9 KRT18P22 ENSG00000244158 ENSG00000234117 TRAPPC3L ENSG00000240050 TSPYL1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CBX3P9 on UCSC Golden Path with GeneCards custom track

Genomic Location for CBX3P9 Gene

Chromosome:
6
Start:
116,453,014 bp from pter
End:
116,453,565 bp from pter
Size:
552 bases
Orientation:
Minus strand

Genomic View for CBX3P9 Gene

Genes around CBX3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX3P9 Gene

ORGUL Member Location for CBX3P9 Gene

ORGUL Member Location for CBX3P9 gene

Proteins for CBX3P9 Gene

Post-translational modifications for CBX3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBX3P9 Gene

Domains & Families for CBX3P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBX3P9 Gene

Function for CBX3P9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P9 Gene

Localization for CBX3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBX3P9 Gene

Pathways & Interactions for CBX3P9 Gene

SuperPathways for CBX3P9 Gene

No Data Available

Interacting Proteins for CBX3P9 Gene

Gene Ontology (GO) - Biological Process for CBX3P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX3P9 Gene

Transcripts for CBX3P9 Gene

fRNAdb Secondary structures for CBX3P9 Gene

  • FR141133

mRNA/cDNA for CBX3P9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P9 Gene

No ASD Table

Relevant External Links for CBX3P9 Gene

GeneLoc Exon Structure for
CBX3P9
ECgene alternative splicing isoforms for
CBX3P9

Expression for CBX3P9 Gene

mRNA expression in normal human tissues for CBX3P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of CBX3P9 Gene:

CBX3P9
genes like me logo Genes that share expression patterns with CBX3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CBX3P9 Gene

Orthologs for CBX3P9 Gene

Evolution for CBX3P9 Gene

ENSEMBL:
Gene Tree for CBX3P9 (if available)
TreeFam:
Gene Tree for CBX3P9 (if available)

No data available for Orthologs for CBX3P9 Gene

Paralogs for CBX3P9 Gene

No data available for Paralogs for CBX3P9 Gene

Variants for CBX3P9 Gene

Relevant External Links for CBX3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CBX3P9 Gene

Disorders for CBX3P9 Gene

No disorders were found for CBX3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CBX3P9 Gene

Publications for CBX3P9 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for CBX3P9 Gene

Sources for CBX3P9 Gene

Content
Loading form....