Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CBX3P4 Gene

Aliases for CBX3P4 Gene

  • Chromobox 3 Pseudogene 4 2 3 5
  • Chromobox Homolog 3 Pseudogene 4 2

External Ids for CBX3P4 Gene

Previous GeneCards Identifiers for CBX3P4 Gene

  • GC12M002898

Summaries for CBX3P4 Gene

GeneCards Summary for CBX3P4 Gene

CBX3P4 (Chromobox 3 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBX3P4 Gene

Genomics for CBX3P4 Gene

Regulatory Elements for CBX3P4 Gene

Enhancers for CBX3P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F002256 0.6 ENCODE 18.6 +537.6 537597 1.6 ZNF133 GLI4 RARA ZNF121 ZNF23 ZNF302 ZNF138 ZNF416 ZNF391 ZNF202 ITFG2 DCP1B CACNA1C-IT3 RPS27P3 CBX3P4 CACNA1C-AS3 CACNA1C-AS4 IQSEC3P1 PIR46918
GH12F001924 0.6 Ensembl ENCODE 18.6 +869.3 869334 1.3 ATF1 ZNF133 FEZF1 GLI4 ZNF2 ZNF121 ZNF302 ZNF416 ZNF548 ZNF263 ITFG2 DCP1B CBX3P4 CACNA1C-AS3 CACNA1C-IT3 LRTM2 ENSG00000250132 IQSEC3P1 CACNA2D4 GC12M001928
GH12F002693 0.5 Ensembl 11.4 +101.0 100995 0.6 CTCF PRDM1 CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 ENSG00000283587
GH12F002824 0.5 ENCODE 11.2 -31.7 -31680 2.6 ZNF341 FKBP4 CBX3P4 RHNO1 TULP3 FOXM1 NRIP2 ENSG00000256150 ENSG00000258325
GH12F002751 0.5 ENCODE 11 +42.9 42946 0.2 SCRT1 ZNF121 SCRT2 CBX3P4 FKBP4 ITFG2 IQSEC3P1 LOC100422463
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CBX3P4 on UCSC Golden Path with GeneCards custom track

Promoters for CBX3P4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000652939 -1106 2800 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 GLIS2 ZNF143 ZNF207 KLF13

Genomic Location for CBX3P4 Gene

Chromosome:
12
Start:
2,786,931 bp from pter
End:
2,794,295 bp from pter
Size:
7,365 bases
Orientation:
Minus strand

Genomic View for CBX3P4 Gene

Genes around CBX3P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX3P4 Gene

Proteins for CBX3P4 Gene

Post-translational modifications for CBX3P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBX3P4 Gene

Domains & Families for CBX3P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBX3P4 Gene

Function for CBX3P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P4 Gene

Localization for CBX3P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBX3P4 Gene

Pathways & Interactions for CBX3P4 Gene

SuperPathways for CBX3P4 Gene

No Data Available

Interacting Proteins for CBX3P4 Gene

Gene Ontology (GO) - Biological Process for CBX3P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX3P4 Gene

Transcripts for CBX3P4 Gene

mRNA/cDNA for CBX3P4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P4 Gene

No ASD Table

Relevant External Links for CBX3P4 Gene

GeneLoc Exon Structure for
CBX3P4
ECgene alternative splicing isoforms for
CBX3P4

Expression for CBX3P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CBX3P4 Gene

mRNA differential expression in normal tissues according to GTEx for CBX3P4 Gene

This gene is overexpressed in Testis (x8.0).

NURSA nuclear receptor signaling pathways regulating expression of CBX3P4 Gene:

CBX3P4
genes like me logo Genes that share expression patterns with CBX3P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CBX3P4 Gene

Orthologs for CBX3P4 Gene

Evolution for CBX3P4 Gene

ENSEMBL:
Gene Tree for CBX3P4 (if available)
TreeFam:
Gene Tree for CBX3P4 (if available)

No data available for Orthologs for CBX3P4 Gene

Paralogs for CBX3P4 Gene

No data available for Paralogs for CBX3P4 Gene

Variants for CBX3P4 Gene

Relevant External Links for CBX3P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CBX3P4 Gene

Disorders for CBX3P4 Gene

No disorders were found for CBX3P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CBX3P4 Gene

Publications for CBX3P4 Gene

No publications were found for CBX3P4 Gene.

Products for CBX3P4 Gene

Sources for CBX3P4 Gene

Content
Loading form....