Free for academic non-profit institutions. Other users need a Commercial license

CBX3P2 Gene(Pseudogene)

Chromobox 3 Pseudogene 2

GCID:
GC18M002652
GIFtS:
18
Genes Participants
UDN Logo

Aliases for CBX3P2 Gene

Aliases for CBX3P2 Gene

  • Chromobox 3 Pseudogene 2 2 3 5
  • Chromobox Homolog 3 Pseudogene 2 2

External Ids for CBX3P2 Gene

Summaries for CBX3P2 Gene

GeneCards Summary for CBX3P2 Gene

CBX3P2 (Chromobox 3 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBX3P2 Gene

Genomics for CBX3P2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CBX3P2 Gene

Enhancers for CBX3P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G003296 1.4 Ensembl ENCODE 19.8 -641.9 -641882 1.8 PKNOX1 CREB3L1 MLX ARNT ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 CBX3P2 GC18P003299 ENSG00000266578
GH18G003245 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -600.7 -600687 22.1 CREB3L1 AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 MYOM1 LOC104968399 LOC101927044 MYL12B MYL12A CBX3P2 LPIN2 EMILIN2 ENSG00000266783 GC18M003245
GH18G003445 2 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -797.6 -797607 14.4 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 TGIF1 DLGAP1-AS1 RPL21P127 CBX3P2 MYL12B METTL4 LOC101927094 GAPLINC
GH18G003591 1.8 FANTOM5 ENCODE dbSUPER 10.5 -940.6 -940602 9.2 HDGF PKNOX1 FOXA2 MLX WRNIP1 ARID4B SIN3A FEZF1 YY1 ZNF143 DLGAP1-AS2 TGIF1 DLGAP1-AS1 CBX3P2 MYL12B
GH18G003601 1.7 FANTOM5 ENCODE dbSUPER 10.5 -951.6 -951566 11.6 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 FEZF1 YY1 CBX5 DLGAP1-AS2 CBX3P2 MYL12B DLGAP1-AS1 LOC101927044 DLGAP1 LOC105371967
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CBX3P2 on UCSC Golden Path with GeneCards custom track

Promoters for CBX3P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000099936 -1105 3801 HDGF PKNOX1 FOXA2 CREB3L1 MLX ARNT AGO1 ARID4B SIN3A DMAP1

Genomic Location for CBX3P2 Gene

Chromosome:
18
Start:
2,652,170 bp from pter
End:
2,655,395 bp from pter
Size:
3,226 bases
Orientation:
Minus strand

Genomic View for CBX3P2 Gene

Genes around CBX3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CBX3P2 Gene

Proteins for CBX3P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CBX3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBX3P2 Gene

Domains & Families for CBX3P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBX3P2 Gene

Function for CBX3P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for CBX3P2 Gene

GenomeRNAi human phenotypes for CBX3P2:
genes like me logo Genes that share phenotypes with CBX3P2: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P2 Gene

Localization for CBX3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBX3P2 Gene

Pathways & Interactions for CBX3P2 Gene

SuperPathways for CBX3P2 Gene

PathCards logo More details on SuperPathways for CBX3P2
No Data Available

Interacting Proteins for CBX3P2 Gene

Gene Ontology (GO) - Biological Process for CBX3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX3P2 Gene

Drugs & Compounds for CBX3P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CBX3P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CBX3P2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P2 Gene

No ASD Table

Relevant External Links for CBX3P2 Gene

GeneLoc Exon Structure for
CBX3P2
ECgene alternative splicing isoforms for
CBX3P2

Expression for CBX3P2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CBX3P2 Gene

mRNA expression in normal human tissues for CBX3P2 Gene
mRNA expression by GTEx for CBX3P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CBX3P2 Gene:

CBX3P2

SOURCE GeneReport for Unigene cluster for CBX3P2 Gene:

Hs.712861
genes like me logo Genes that share expression patterns with CBX3P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBX3P2 Gene

Orthologs for CBX3P2 Gene

Evolution for CBX3P2 Gene

ENSEMBL:
Gene Tree for CBX3P2 (if available)
TreeFam:
Gene Tree for CBX3P2 (if available)

No data available for Orthologs for CBX3P2 Gene

Paralogs for CBX3P2 Gene

No data available for Paralogs for CBX3P2 Gene

Variants for CBX3P2 Gene

Sequence variations from dbSNP and Humsavar for CBX3P2 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs139872818 Uncertain significance 2,656,225(+) GAGCG(C/G)TCGGA nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs559283578 Uncertain significance 2,656,115(+) CCTCT(A/G)TGGGG nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs748596758 Uncertain significance 2,656,130(+) AGGAG(C/G)ATGGC nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs766395572 Uncertain significance 2,656,237(+) TACGC(A/G/T)GGATT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs772718353 Uncertain significance 2,656,138(+) GGCGG(A/G/T)GGCGT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CBX3P2 Gene

Variant ID Type Subtype PubMed ID
esv2761986 CNV gain 21179565
esv3893063 CNV loss 25118596
nsv1065848 CNV gain 25217958
nsv482935 CNV loss 15286789
nsv576251 CNV gain 21841781

Relevant External Links for CBX3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CBX3P2 Gene

Disorders for CBX3P2 Gene

Relevant External Links for CBX3P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CBX3P2

No disorders were found for CBX3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CBX3P2 Gene

Publications for CBX3P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CBX3P2 Gene

Sources for CBX3P2 Gene

Content
Loading form....