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Aliases for CBX3P2 Gene

Aliases for CBX3P2 Gene

  • Chromobox 3 Pseudogene 2 2 3 5
  • Chromobox Homolog 3 Pseudogene 2 2

External Ids for CBX3P2 Gene

Summaries for CBX3P2 Gene

GeneCards Summary for CBX3P2 Gene

CBX3P2 (Chromobox 3 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBX3P2 Gene

Genomics for CBX3P2 Gene

Regulatory Elements for CBX3P2 Gene

Enhancers for CBX3P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F003245 1.8 FANTOM5 Ensembl ENCODE 10.5 -600.7 -600687 22.1 CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MYOM1 LOC104968399 LOC101927044 MYL12B MYL12A CBX3P2 LPIN2 EMILIN2 ENSG00000266783 GC18M003245
GH18F003445 1.8 FANTOM5 Ensembl ENCODE 10.5 -797.6 -797607 14.4 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TGIF1 DLGAP1-AS1 RPL21P127 CBX3P2 MYL12B METTL4 LOC101927094 GAPLINC
GH18F003601 1.7 FANTOM5 Ensembl ENCODE 10.5 -951.6 -951566 11.6 PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 CBX5 ZNF207 DLGAP1-AS2 CBX3P2 MYL12B DLGAP1-AS1 LOC101927044 DLGAP1 LOC105371967
GH18F003591 1.6 FANTOM5 ENCODE 10.5 -940.6 -940602 9.2 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 YY1 ZNF143 FOS DLGAP1-AS2 TGIF1 DLGAP1-AS1 CBX3P2 MYL12B
GH18F002653 1.5 FANTOM5 ENCODE 5.8 -1.4 -1374 6.5 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1 NDC80 EMILIN2 METTL4 SMCHD1 CBX3P2 LPIN2 GC18M002508
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CBX3P2 on UCSC Golden Path with GeneCards custom track

Promoters for CBX3P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000521333 -1205 4001 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1

Genomic Location for CBX3P2 Gene

Chromosome:
18
Start:
2,652,170 bp from pter
End:
2,655,395 bp from pter
Size:
3,226 bases
Orientation:
Minus strand

Genomic View for CBX3P2 Gene

Genes around CBX3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX3P2 Gene

Proteins for CBX3P2 Gene

Post-translational modifications for CBX3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBX3P2 Gene

Domains & Families for CBX3P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBX3P2 Gene

Function for CBX3P2 Gene

Phenotypes for CBX3P2 Gene

GenomeRNAi human phenotypes for CBX3P2:
genes like me logo Genes that share phenotypes with CBX3P2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P2 Gene

Localization for CBX3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBX3P2 Gene

Pathways & Interactions for CBX3P2 Gene

SuperPathways for CBX3P2 Gene

No Data Available

Interacting Proteins for CBX3P2 Gene

Gene Ontology (GO) - Biological Process for CBX3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX3P2 Gene

Transcripts for CBX3P2 Gene

mRNA/cDNA for CBX3P2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P2 Gene

No ASD Table

Relevant External Links for CBX3P2 Gene

GeneLoc Exon Structure for
CBX3P2
ECgene alternative splicing isoforms for
CBX3P2

Expression for CBX3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CBX3P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CBX3P2 Gene:

CBX3P2

SOURCE GeneReport for Unigene cluster for CBX3P2 Gene:

Hs.712861
genes like me logo Genes that share expression patterns with CBX3P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CBX3P2 Gene

Orthologs for CBX3P2 Gene

Evolution for CBX3P2 Gene

ENSEMBL:
Gene Tree for CBX3P2 (if available)
TreeFam:
Gene Tree for CBX3P2 (if available)

No data available for Orthologs for CBX3P2 Gene

Paralogs for CBX3P2 Gene

No data available for Paralogs for CBX3P2 Gene

Variants for CBX3P2 Gene

Sequence variations from dbSNP and Humsavar for CBX3P2 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs2430853 Benign 2,656,249(-) ACACA(C/G)GCGCG nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs11080976 -- 2,653,928(+) CTTTG(A/G)TGAAA intron-variant, upstream-variant-2KB
rs111495043 -- 2,654,849(+) ACCTA(A/G)TCCTC intron-variant, upstream-variant-2KB
rs111527232 -- 2,656,504(+) CGCTC(C/G)TTTTA intron-variant, upstream-variant-2KB
rs111625395 -- 2,652,747(+) CAGGA(A/G)TGCCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CBX3P2 Gene

Variant ID Type Subtype PubMed ID
nsv576251 CNV gain 21841781
nsv482935 CNV loss 15286789
nsv1065848 CNV gain 25217958
esv3893063 CNV loss 25118596
esv2761986 CNV gain 21179565

Relevant External Links for CBX3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CBX3P2 Gene

Disorders for CBX3P2 Gene

Relevant External Links for CBX3P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CBX3P2

No disorders were found for CBX3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CBX3P2 Gene

Publications for CBX3P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CBX3P2 Gene

Sources for CBX3P2 Gene

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