Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CBWD6 Gene

Aliases for CBWD6 Gene

  • COBW Domain Containing 6 2 3
  • Cobalamin Synthase W Domain-Containing Protein 6 4
  • COBW Domain Containing 7 5
  • CBWD7 5

External Ids for CBWD6 Gene

Previous GeneCards Identifiers for CBWD6 Gene

  • GC09P042659
  • GC09M068495
  • GC09M069204

Summaries for CBWD6 Gene

GeneCards Summary for CBWD6 Gene

CBWD6 (COBW Domain Containing 6) is a Protein Coding gene. An important paralog of this gene is CBWD3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBWD6 Gene

Genomics for CBWD6 Gene

Regulatory Elements for CBWD6 Gene

Enhancers for CBWD6 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CBWD6 on UCSC Golden Path with GeneCards custom track

Genomic Location for CBWD6 Gene

Chromosome:
9
Start:
41,131,306 bp from pter
End:
41,199,261 bp from pter
Size:
67,956 bases
Orientation:
Minus strand

Genomic View for CBWD6 Gene

Genes around CBWD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBWD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBWD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBWD6 Gene

Proteins for CBWD6 Gene

  • Protein details for CBWD6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4V339-CBWD6_HUMAN
    Recommended name:
    COBW domain-containing protein 6
    Protein Accession:
    Q4V339

    Protein attributes for CBWD6 Gene

    Size:
    395 amino acids
    Molecular mass:
    43964 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CBWD6 Gene

Proteomics data for CBWD6 Gene at MOPED

Post-translational modifications for CBWD6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CBWD6 Gene

Domains & Families for CBWD6 Gene

Suggested Antigen Peptide Sequences for CBWD6 Gene

Graphical View of Domain Structure for InterPro Entry

Q4V339

UniProtKB/Swiss-Prot:

CBWD6_HUMAN :
  • Contains 1 cobW C-terminal domain.
  • Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.
Domain:
  • Contains 1 cobW C-terminal domain.
Family:
  • Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.
genes like me logo Genes that share domains with CBWD6: view

No data available for Gene Families for CBWD6 Gene

Function for CBWD6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBWD6 Gene

Localization for CBWD6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CBWD6 Gene COMPARTMENTS Subcellular localization image for CBWD6 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CBWD6 Gene

Pathways & Interactions for CBWD6 Gene

SuperPathways for CBWD6 Gene

No Data Available

Interacting Proteins for CBWD6 Gene

Gene Ontology (GO) - Biological Process for CBWD6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBWD6 Gene

Drugs & Compounds for CBWD6 Gene

No Compound Related Data Available

Transcripts for CBWD6 Gene

mRNA/cDNA for CBWD6 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(18) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CBWD6 Gene

COBW domain containing 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CBWD6 Gene

No ASD Table

Relevant External Links for CBWD6 Gene

GeneLoc Exon Structure for
CBWD6
ECgene alternative splicing isoforms for
CBWD6

Expression for CBWD6 Gene

mRNA expression in normal human tissues for CBWD6 Gene

SOURCE GeneReport for Unigene cluster for CBWD6 Gene Hs.597638

genes like me logo Genes that share expression patterns with CBWD6: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CBWD6 Gene

Orthologs for CBWD6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CBWD6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 56 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 56 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 49 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Cbwd1 36
  • 51 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 47 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia CBWD2 36
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves CBWD1 36
  • 44 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 43 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii cbwd 36
  • 42 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 18 (a)
OneToMany
Species with no ortholog for CBWD6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CBWD6 Gene

ENSEMBL:
Gene Tree for CBWD6 (if available)
TreeFam:
Gene Tree for CBWD6 (if available)

Paralogs for CBWD6 Gene

Paralogs for CBWD6 Gene

(5) SIMAP similar genes for CBWD6 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for CBWD6 Gene

genes like me logo Genes that share paralogs with CBWD6: view

Variants for CBWD6 Gene

Sequence variations from dbSNP and Humsavar for CBWD6 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1757294 -- 41,169,136(-) TAAAT(A/G)TTTGT intron-variant
rs113003772 -- 41,163,712(+) AGAGC(A/G)CTTAC intron-variant
rs113065545 -- 41,137,829(+) TGTCT(C/T)GGTCC intron-variant
rs113253640 -- 41,172,654(+) ACAAT(C/T)AATCC intron-variant
rs113407575 -- 41,183,604(+) CAGCC(A/G)CTCTT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CBWD6 Gene

Variant ID Type Subtype PubMed ID
dgv2381e1 CNV Complex 17122850
dgv135n16 CNV Deletion 17901297
esv33449 CNV Loss 17666407
essv17250 CNV CNV 17122850

Variation tolerance for CBWD6 Gene

Gene Damage Index Score: 6.31; 76.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CBWD6 Gene

HapMap Linkage Disequilibrium report
CBWD6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CBWD6 Gene

Disorders for CBWD6 Gene

Relevant External Links for CBWD6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CBWD6

No disorders were found for CBWD6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CBWD6 Gene

Publications for CBWD6 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CBWD6 Gene

Sources for CBWD6 Gene

Content