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Aliases for CBR3-AS1 Gene

Subcategory (RNA class) for CBR3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CBR3-AS1 Gene

  • CBR3 Antisense RNA 1 2 3 5
  • Prostate Cancer-Up-Regulated Long Noncoding RNA 1 2 3
  • CBR3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PlncRNA-1 3
  • PlncRNA1 3

External Ids for CBR3-AS1 Gene

Previous GeneCards Identifiers for CBR3-AS1 Gene

  • GC21M037506

Summaries for CBR3-AS1 Gene

GeneCards Summary for CBR3-AS1 Gene

CBR3-AS1 (CBR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CBR3-AS1 include Prostate Cancer.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBR3-AS1 Gene

Genomics for CBR3-AS1 Gene

Regulatory Elements for CBR3-AS1 Gene

Enhancers for CBR3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F036186 1.2 Ensembl ENCODE 4.8 -12.3 -12331 2.9 HDAC1 MLX ARID4B SIN3A RAD21 CHAMP1 RARA YY1 ZNF121 RCOR1 DOPEY2 MORC3 CBR3-AS1 GC21M036214 GC21M036213
GH21F036259 1.2 Ensembl ENCODE 4.7 -84.7 -84691 1.8 HDAC1 ARNT ZNF76 GLI4 ZBTB40 RAD21 ZNF121 ZNF366 SCRT2 ZNF143 MORC3 ENSG00000224790 CBR3-AS1 GC21P036251 SRSF9P1
GH21F036076 1.2 Ensembl ENCODE 4.5 +97.5 97499 3.8 HDGF ATF1 YY1 FOS KLF13 ZNF263 CREB3 SMARCA4 PBX2 KDM1A LINC01436 CBR1 SETD4 LOC105369306 CBR3-AS1
GH21F036253 1 Ensembl ENCODE 4.9 -78.3 -78271 1.6 SOX13 HDAC1 RAD21 GATA3 CTBP1 NR2F6 ZNF263 USF2 REST ELF1 MORC3 CBR3-AS1 GC21P036251 SRSF9P1
GH21F036255 1 Ensembl ENCODE 4.7 -79.8 -79839 1.3 HDAC1 PKNOX1 ZNF133 INSM2 RAD21 ETV6 ZNF639 ZNF362 MTA2 JUNB CBR3-AS1 DOPEY2 GC21P036251 SRSF9P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CBR3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CBR3-AS1 Gene

Chromosome:
21
Start:
36,131,767 bp from pter
End:
36,175,815 bp from pter
Size:
44,049 bases
Orientation:
Minus strand

Genomic View for CBR3-AS1 Gene

Genes around CBR3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBR3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBR3-AS1 Gene

Proteins for CBR3-AS1 Gene

Post-translational modifications for CBR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBR3-AS1 Gene

Domains & Families for CBR3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBR3-AS1 Gene

Function for CBR3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBR3-AS1 Gene

Localization for CBR3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBR3-AS1 Gene

Pathways & Interactions for CBR3-AS1 Gene

SuperPathways for CBR3-AS1 Gene

No Data Available

Interacting Proteins for CBR3-AS1 Gene

Gene Ontology (GO) - Biological Process for CBR3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBR3-AS1 Gene

Transcripts for CBR3-AS1 Gene

mRNA/cDNA for CBR3-AS1 Gene

(6) Additional mRNA sequences :
(18) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CBR3-AS1 Gene

CBR3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CBR3-AS1 Gene

No ASD Table

Relevant External Links for CBR3-AS1 Gene

GeneLoc Exon Structure for
CBR3-AS1
ECgene alternative splicing isoforms for
CBR3-AS1

Expression for CBR3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CBR3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CBR3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.5) and Minor Salivary Gland (x4.2).

SOURCE GeneReport for Unigene cluster for CBR3-AS1 Gene:

Hs.651214
genes like me logo Genes that share expression patterns with CBR3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CBR3-AS1 Gene

Orthologs for CBR3-AS1 Gene

Evolution for CBR3-AS1 Gene

ENSEMBL:
Gene Tree for CBR3-AS1 (if available)
TreeFam:
Gene Tree for CBR3-AS1 (if available)

No data available for Orthologs for CBR3-AS1 Gene

Paralogs for CBR3-AS1 Gene

No data available for Paralogs for CBR3-AS1 Gene

Variants for CBR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CBR3-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1056892 drug-response 36,146,408(+) GGACT(A/G)TGGAG intron-variant, reference, missense
rs10211908 -- 36,142,436(+) caaaa(A/C)aaaaa intron-variant, downstream-variant-500B
rs10470092 -- 36,154,516(+) CTGTC(G/T)CCCAG intron-variant
rs10470174 -- 36,144,389(+) ggagg(C/T)ggagg intron-variant
rs10483032 -- 36,140,267(+) AGATC(A/G)TAGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CBR3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv979535 CNV duplication 23825009
nsv587469 CNV loss 21841781
nsv587466 CNV gain 21841781
nsv587464 CNV gain 21841781
nsv516175 CNV gain 19592680
nsv459249 CNV gain 19166990
nsv1071754 CNV deletion 25765185
esv3646963 CNV gain 21293372
esv3575388 CNV gain 25503493
esv3568175 CNV loss 25503493
esv33578 CNV loss 17666407
esv2763686 CNV gain+loss 21179565
esv2751928 CNV gain 17911159
esv2751927 CNV gain 17911159
esv1434184 CNV deletion 17803354
dgv813e214 CNV gain 21293372
dgv7832n54 CNV gain 21841781
dgv4428n100 CNV gain 25217958
dgv4427n100 CNV gain 25217958

Relevant External Links for CBR3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBR3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CBR3-AS1 Gene

Disorders for CBR3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CBR3-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, hereditary, 5
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CBR3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CBR3-AS1
genes like me logo Genes that share disorders with CBR3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CBR3-AS1 Gene

Publications for CBR3-AS1 Gene

  1. Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage. (PMID: 24337686) Wang C.M. … Cao X.F. (Dig. Dis. Sci. 2014) 2 3 64
  2. The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. (PMID: 22264502) Cui Z. … Sun Y. (Urol. Oncol. 2013) 2 3 64
  3. A feed-forward regulatory loop between androgen receptor and PlncRNA-1 promotes prostate cancer progression. (PMID: 26808578) Fang Z. … Sun Y. (Cancer Lett. 2016) 3 64
  4. Upregulation of Long Non-Coding RNA PlncRNA-1 Promotes Metastasis and Induces Epithelial-Mesenchymal Transition in Hepatocellular Carcinoma. (PMID: 26906068) Dong L. … Li H. (Cell. Physiol. Biochem. 2016) 3 64
  5. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3 64

Products for CBR3-AS1 Gene

Sources for CBR3-AS1 Gene

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