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Aliases for CBR3-AS1 Gene

Subcategory (RNA class) for CBR3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CBR3-AS1 Gene

  • CBR3 Antisense RNA 1 2 3 5
  • Prostate Cancer-Up-Regulated Long Noncoding RNA 1 2 3
  • CBR3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PlncRNA-1 3
  • PlncRNA1 3

External Ids for CBR3-AS1 Gene

Previous GeneCards Identifiers for CBR3-AS1 Gene

  • GC21M037506

Summaries for CBR3-AS1 Gene

GeneCards Summary for CBR3-AS1 Gene

CBR3-AS1 (CBR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBR3-AS1 Gene

Genomics for CBR3-AS1 Gene

Genomic Location for CBR3-AS1 Gene

Chromosome:
21
Start:
36,131,767 bp from pter
End:
36,175,815 bp from pter
Size:
44,049 bases
Orientation:
Minus strand

Genomic View for CBR3-AS1 Gene

Genes around CBR3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBR3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBR3-AS1 Gene

No data available for Regulatory Elements for CBR3-AS1 Gene

Proteins for CBR3-AS1 Gene

Post-translational modifications for CBR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBR3-AS1 Gene

Domains & Families for CBR3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBR3-AS1 Gene

Function for CBR3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBR3-AS1 Gene

Localization for CBR3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBR3-AS1 Gene

Pathways & Interactions for CBR3-AS1 Gene

SuperPathways for CBR3-AS1 Gene

No Data Available

Interacting Proteins for CBR3-AS1 Gene

Gene Ontology (GO) - Biological Process for CBR3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBR3-AS1 Gene

Drugs & Compounds for CBR3-AS1 Gene

No Compound Related Data Available

Transcripts for CBR3-AS1 Gene

mRNA/cDNA for CBR3-AS1 Gene

(6) Additional mRNA sequences :
(18) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CBR3-AS1 Gene

CBR3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CBR3-AS1 Gene

No ASD Table

Relevant External Links for CBR3-AS1 Gene

GeneLoc Exon Structure for
CBR3-AS1
ECgene alternative splicing isoforms for
CBR3-AS1

Expression for CBR3-AS1 Gene

mRNA expression in normal human tissues for CBR3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CBR3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.5) and Minor Salivary Gland (x4.2).

SOURCE GeneReport for Unigene cluster for CBR3-AS1 Gene Hs.651214

genes like me logo Genes that share expression patterns with CBR3-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CBR3-AS1 Gene

Orthologs for CBR3-AS1 Gene

Evolution for CBR3-AS1 Gene

ENSEMBL:
Gene Tree for CBR3-AS1 (if available)
TreeFam:
Gene Tree for CBR3-AS1 (if available)

No data available for Orthologs for CBR3-AS1 Gene

Paralogs for CBR3-AS1 Gene

No data available for Paralogs for CBR3-AS1 Gene

Variants for CBR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CBR3-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs2006298 -- 36,147,781(+) cccaa(A/G)tagct intron-variant
rs726271 -- 36,153,237(-) GTGGA(A/T)AGAAC intron-variant
rs2027894 -- 36,132,477(+) TTTGT(C/T)GCCAA nc-transcript-variant
rs2003769 -- 36,147,815(-) ttagc(C/T)gggca intron-variant
rs2242804 -- 36,149,545(+) AATGC(C/T)GTTTT intron-variant

Relevant External Links for CBR3-AS1 Gene

HapMap Linkage Disequilibrium report
CBR3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CBR3-AS1 Gene

Disorders for CBR3-AS1 Gene

Relevant External Links for CBR3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CBR3-AS1

No disorders were found for CBR3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CBR3-AS1 Gene

Publications for CBR3-AS1 Gene

  1. Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage. (PMID: 24337686) Wang C.M. … Cao X.F. (Dig. Dis. Sci. 2014) 2 3 67
  2. The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. (PMID: 22264502) Cui Z. … Sun Y. (Urol. Oncol. 2013) 2 3
  3. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Mapping of a novel human carbonyl reductase, CBR3, and ribosomal pseudogenes to human chromosome 21q22.2. (PMID: 9740676) Watanabe K. … Nomura T. (Genomics 1998) 3

Products for CBR3-AS1 Gene

Sources for CBR3-AS1 Gene

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