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Aliases for CBR3-AS1 Gene

Subcategory (RNA class) for CBR3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for CBR3-AS1 Gene

  • CBR3 Antisense RNA 1 2 3
  • Prostate Cancer-Up-Regulated Long Noncoding RNA 1 2 3
  • CBR3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PlncRNA-1 3
  • PlncRNA1 3

External Ids for CBR3-AS1 Gene

ORGUL Members for CBR3-AS1 Gene

Summaries for CBR3-AS1 Gene

GeneCards Summary for CBR3-AS1 Gene

CBR3-AS1 (CBR3 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class. Diseases associated with CBR3-AS1 include prostate cancer.

fRNAdb sequence ontologies for CBR3-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CBR3-AS1 Gene

Genomics for CBR3-AS1 Gene

Genomic Location for CBR3-AS1 Gene

Start:
36,131,767 bp from pter
End:
36,175,815 bp from pter
Size:
44,049 bases
Orientation:
Minus strand

Genomic View for CBR3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CBR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBR3-AS1 Gene

No data available for Regulatory Elements for CBR3-AS1 Gene

Proteins for CBR3-AS1 Gene

Post-translational modifications for CBR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBR3-AS1 Gene

Domains for CBR3-AS1 Gene

Gene Families for CBR3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with CBR3-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for CBR3-AS1 Gene

Function for CBR3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CBR3-AS1 Gene

Localization for CBR3-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for CBR3-AS1 Gene

Pathways for CBR3-AS1 Gene

SuperPathways for CBR3-AS1 Gene

No Data Available

Interacting Proteins for CBR3-AS1 Gene

Gene Ontology (GO) - Biological Process for CBR3-AS1 Gene

None

No data available for Pathways by source for CBR3-AS1 Gene

Transcripts for CBR3-AS1 Gene

mRNA/cDNA for CBR3-AS1 Gene

(6) Additional mRNA sequences :
(21) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CBR3-AS1 Gene

CBR3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CBR3-AS1 Gene

No ASD Table

Relevant External Links for CBR3-AS1 Gene

GeneLoc Exon Structure for
CBR3-AS1
ECgene alternative splicing isoforms for
CBR3-AS1

Expression for CBR3-AS1 Gene

mRNA expression in normal human tissues for CBR3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CBR3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (4.5) and Minor Salivary Gland (4.2).

SOURCE GeneReport for Unigene cluster for CBR3-AS1 Gene Hs.651214

genes like me logo Genes that share expressions with CBR3-AS1: view

Orthologs for CBR3-AS1 Gene

Evolution for CBR3-AS1 Gene

ENSEMBL:
Gene Tree for CBR3-AS1 (if available)
TreeFam:
Gene Tree for CBR3-AS1 (if available)

No data available for Orthologs for CBR3-AS1 Gene

Paralogs for CBR3-AS1 Gene

No data available for Paralogs for CBR3-AS1 Gene

Variants for CBR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CBR3-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs726271 -- 36,153,237(-) GTGGA(A/T)AGAAC intron-variant
rs726272 -- 36,152,948(-) TCTCT(A/G)TGGAA intron-variant
rs2003769 -- 36,147,815(-) ttagc(C/T)gggca intron-variant
rs2006298 -- 36,147,781(+) cccaa(A/G)tagct intron-variant
rs2027894 -- 36,132,477(+) TTTGT(C/T)GCCAA nc-transcript-variant

Relevant External Links for CBR3-AS1 Gene

HapMap Linkage Disequilibrium report
CBR3-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for CBR3-AS1 Gene

Disorders for CBR3-AS1 Gene

(1) MalaCards Diseases for CBR3-AS1 Gene

Search for CBR3-AS1 Gene in MalaCards »
genes like me logo Genes that share disorders with CBR3-AS1: view

No data available for UniProtKB/Swiss-Prot for CBR3-AS1 Gene

Publications for CBR3-AS1 Gene

  1. The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. (PMID: 22264502) Cui Z. … Sun Y. (Urol. Oncol. 2013) 2 3
  2. Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage. (PMID: 24337686) Wang C.M. … Cao X.F. (Dig. Dis. Sci. 2014) 2 3
  3. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
  4. Mapping of a novel human carbonyl reductase, CBR3, and ribosomal pseudogenes to human chromosome 21q22.2. (PMID: 9740676) Watanabe K. … Nomura T. (Genomics 1998) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CBR3-AS1 Gene

Sources for CBR3-AS1 Gene

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