Aliases for CBR3-AS1 Gene
Subcategory (RNA class) for CBR3-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for CBR3-AS1 Gene
External Ids for CBR3-AS1 Gene
- HGNC: 43664
- Entrez Gene: 100506428
- Ensembl: ENSG00000236830
Previous GeneCards Identifiers for CBR3-AS1 Gene
- GC21M037506
Summaries for CBR3-AS1 Gene
GeneCards Summary for CBR3-AS1 Gene
CBR3-AS1 (CBR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CBR3-AS1 include Prostate Cancer.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBR3-AS1 Gene
Genomics for CBR3-AS1 Gene
Regulatory Elements for CBR3-AS1 Gene
Enhancers for CBR3-AS1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH21G036078 | 1.5 | Ensembl ENCODE dbSUPER | 4.5 | +96.6 | 96576 | 2.0 | HNRNPUL1 ATF1 CREB3L1 YY1 TCF12 ZNF766 GATA2 FOS KLF13 ZNF263 | LINC01436 CBR1 RIMKLBP1 SETD4 LOC105369306 CBR3-AS1 |
| GH21G036186 | 1.2 | Ensembl ENCODE | 4.9 | -12.2 | -12186 | 2.6 | FOXA2 MLX ARID4B SIN3A YY1 TCF12 ZNF121 FOS ZNF579 MBD2 | DOPEY2 MORC3 CBR3-AS1 GC21M036214 GC21M036213 |
| GH21G036253 | 0.8 | ENCODE | 4.9 | -78.3 | -78271 | 1.6 | HDAC1 SOX13 RAD21 CTBP1 GATA3 NR2F6 IKZF2 ZNF263 ELF4 USF2 | MORC3 CBR3-AS1 GC21P036251 SRSF9P1 |
| GH21G036255 | 0.8 | ENCODE | 4.7 | -79.9 | -79947 | 1.1 | HDAC1 PKNOX1 ZNF133 INSM2 ETV6 ZNF639 ZNF362 MTA2 JUNB ZEB2 | CBR3-AS1 DOPEY2 GC21P036251 SRSF9P1 |
| GH21G035228 | 0.7 | dbSUPER | 5 | +946.4 | 946360 | 1.4 | HDAC1 PKNOX1 TBL1XR1 TAL1 SALL2 ZBTB40 FOSL1 TCF12 NCOR1 NR2F6 | SMIM11A CBR3-AS1 PIR62106 PIR41155 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CBR3-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CBR3-AS1 Gene
- Chromosome:
- 21
- Start:
- 36,131,767 bp from pter
- End:
- 36,175,815 bp from pter
- Size:
- 44,049 bases
- Orientation:
- Minus strand
Genomic View for CBR3-AS1 Gene
Genes around CBR3-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.12 by Ensembl
- 21q22.12 by Entrez Gene
- 21q22.12 by HGNC
CBR3-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CBR3-AS1 Gene
Proteins for CBR3-AS1 Gene
Post-translational modifications for CBR3-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for CBR3-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CBR3-AS1
- Origene Custom Protein Services for CBR3-AS1
- Search GeneTex for Proteins for CBR3-AS1
Assay Products
No data available for DME Specific Peptides for CBR3-AS1 Gene
Domains & Families for CBR3-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBR3-AS1 Gene
Function for CBR3-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CBR3-AS1
-
- Search ViGene Biosciences for CBR3-AS1
CRISPR Products
- Browse CRISPR knockouts for CBR3-AS1
miRNA Products
- Search ViGene Biosciences for CBR3-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for CBR3-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for CBR3-AS1
- VectorBuilder custom plasmid, inducible vectors for CBR3-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CBR3-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CBR3-AS1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBR3-AS1 Gene
Localization for CBR3-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CBR3-AS1 Gene
Transcripts for CBR3-AS1 Gene
mRNA/cDNA for CBR3-AS1 Gene
- (6) Additional mRNA sequences :
- (18) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CBR3-AS1 Gene
CRISPR Products
- Browse CRISPR knockouts for CBR3-AS1
miRNA Products
- Search ViGene Biosciences for CBR3-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for CBR3-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for CBR3-AS1
- VectorBuilder custom plasmid, inducible vectors for CBR3-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CBR3-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CBR3-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for CBR3-AS1 Gene
This gene is overexpressed in Esophagus - Mucosa (x4.5) and Minor Salivary Gland (x4.2).
SOURCE GeneReport for Unigene cluster for CBR3-AS1 Gene:
Hs.651214
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBR3-AS1 Gene
Orthologs for CBR3-AS1 Gene
No data available for Orthologs for CBR3-AS1 Gene
Paralogs for CBR3-AS1 Gene
No data available for Paralogs for CBR3-AS1 Gene
Variants for CBR3-AS1 Gene
| SNP ID | Clin | Chr 21 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1056892 | drug-response | 36,146,408(+) | GGACT(A/G)TGGAG | intron-variant, reference, missense | |
| rs1000289287 | -- | 36,154,674(+) | CACCT(C/G)CCTCG | intron-variant | |
| rs1000363840 | -- | 36,152,187(+) | ACCTT(C/T)AGTTC | intron-variant | |
| rs1000526584 | -- | 36,142,317(+) | GTCCC(A/C)GCTAC | intron-variant, downstream-variant-500B | |
| rs1000667343 | -- | 36,158,067(+) | GTGCT(C/G)GGATT | intron-variant, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv4427n100 | CNV | gain | 25217958 |
| dgv4428n100 | CNV | gain | 25217958 |
| dgv7832n54 | CNV | gain | 21841781 |
| dgv813e214 | CNV | gain | 21293372 |
| esv1434184 | CNV | deletion | 17803354 |
| esv2751927 | CNV | gain | 17911159 |
| esv2751928 | CNV | gain | 17911159 |
| esv2763686 | CNV | gain+loss | 21179565 |
| esv33578 | CNV | loss | 17666407 |
| esv3568175 | CNV | loss | 25503493 |
| esv3575388 | CNV | gain | 25503493 |
| esv3646963 | CNV | gain | 21293372 |
| nsv1071754 | CNV | deletion | 25765185 |
| nsv459249 | CNV | gain | 19166990 |
| nsv516175 | CNV | gain | 19592680 |
| nsv587464 | CNV | gain | 21841781 |
| nsv587466 | CNV | gain | 21841781 |
| nsv587469 | CNV | loss | 21841781 |
| nsv979535 | CNV | duplication | 23825009 |
Relevant External Links for CBR3-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CBR3-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CBR3-AS1 Gene
Disorders for CBR3-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| prostate cancer |
|
|
Search CBR3-AS1 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for CBR3-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CBR3-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for CBR3-AS1 Gene
Publications for CBR3-AS1 Gene
- Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage. (PMID: 24337686) Wang C.M. … Cao X.F. (Dig. Dis. Sci. 2014) 2 3 64
- The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. (PMID: 22264502) Cui Z. … Sun Y. (Urol. Oncol. 2013) 2 3 64
- Upregulation of Long Non-Coding RNA PlncRNA-1 Promotes Metastasis and Induces Epithelial-Mesenchymal Transition in Hepatocellular Carcinoma. (PMID: 26906068) Dong L. … Li H. (Cell. Physiol. Biochem. 2016) 3 64
- A feed-forward regulatory loop between androgen receptor and PlncRNA-1 promotes prostate cancer progression. (PMID: 26808578) Fang Z. … Sun Y. (Cancer Lett. 2016) 3 64
- Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3 64
Products for CBR3-AS1 Gene
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
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- Browse Immunoprecipitation Assays
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- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CBR3-AS1
- Origene Custom Protein Services for CBR3-AS1
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CBR3-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CBR3-AS1
- GenScript: Custom all cDNA clones Services for CBR3-AS1
- GenScript Custom Purified and Recombinant Proteins Services for CBR3-AS1
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- Browse GenScript CRISPR for CBR3-AS1
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- CloneReady with Over 120,000 Genes
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for CBR3-AS1
- VectorBuilder custom plasmid, inducible vectors for CBR3-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CBR3-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CBR3-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
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- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer