Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CBR3-AS1 Gene

Subcategory (RNA class) for CBR3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CBR3-AS1 Gene

  • CBR3 Antisense RNA 1 2 3 5
  • Prostate Cancer-Up-Regulated Long Noncoding RNA 1 2 3
  • CBR3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PlncRNA-1 3
  • PlncRNA1 3

External Ids for CBR3-AS1 Gene

Previous GeneCards Identifiers for CBR3-AS1 Gene

  • GC21M037506

Summaries for CBR3-AS1 Gene

GeneCards Summary for CBR3-AS1 Gene

CBR3-AS1 (CBR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CBR3-AS1 include Prostate Cancer.

Additional gene information for CBR3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBR3-AS1 Gene

Genomics for CBR3-AS1 Gene

Regulatory Elements for CBR3-AS1 Gene

Enhancers for CBR3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H036078 1.4 Ensembl ENCODE dbSUPER 4.5 +96.6 96576 1 HDAC1 TBP NFRKB ZBTB40 CHAMP1 YY1 ZNF766 EGR1 CAVIN1 ZNF592 LINC01436 CBR1 SETD4 RIMKLBP1 LOC105369306 CBR3-AS1
GH21H036186 1.2 Ensembl ENCODE 4.8 -12.2 -12186 2 FOXA2 NFIB MLX ARID4B SIN3A BMI1 RAD21 RARA YY1 ZNF121 DOPEY2 MORC3 CBR3-AS1 GC21M036214 GC21M036213
GH21H035228 0.7 dbSUPER 5.1 +946.4 946360 1 HDAC1 PKNOX1 TBL1XR1 TAL1 ZBTB40 NR2F2 FOSL1 MEF2D TCF12 NCOR1 CBR3-AS1 PIR62106 PIR41155
GH21H036255 0.7 ENCODE 4.7 -79.9 -79947 1 ZNF639 PKNOX1 ZNF362 INSM2 JUNB TSHZ1 ZEB2 EBF1 ATF2 OSR2 SETD4 CBR3-AS1 DOPEY2 GC21P036251 SRSF9P1
GH21H036253 0.6 ENCODE 4.9 -78.3 -78271 1 SOX13 JUND GATA3 CTBP1 IKZF1 TCF7 NR2F6 RUNX3 IKZF2 SPI1 MORC3 CBR3-AS1 GC21P036251 SRSF9P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CBR3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CBR3-AS1 Gene

Chromosome:
21
Start:
36,131,767 bp from pter
End:
36,175,815 bp from pter
Size:
44,049 bases
Orientation:
Minus strand

Genomic View for CBR3-AS1 Gene

Genes around CBR3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBR3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBR3-AS1 Gene

Proteins for CBR3-AS1 Gene

Post-translational modifications for CBR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBR3-AS1 Gene

Domains & Families for CBR3-AS1 Gene

Gene Families for CBR3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CBR3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CBR3-AS1 Gene

Function for CBR3-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CBR3-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBR3-AS1 Gene

Localization for CBR3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CBR3-AS1 Gene

Pathways & Interactions for CBR3-AS1 Gene

SuperPathways for CBR3-AS1 Gene

No Data Available

Interacting Proteins for CBR3-AS1 Gene

Gene Ontology (GO) - Biological Process for CBR3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBR3-AS1 Gene

Drugs & Compounds for CBR3-AS1 Gene

No Compound Related Data Available

Transcripts for CBR3-AS1 Gene

mRNA/cDNA for CBR3-AS1 Gene

(6) Additional mRNA sequences :
(18) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CBR3-AS1 Gene

CBR3 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CBR3-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CBR3-AS1 Gene

No ASD Table

Relevant External Links for CBR3-AS1 Gene

GeneLoc Exon Structure for
CBR3-AS1
ECgene alternative splicing isoforms for
CBR3-AS1

Expression for CBR3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CBR3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CBR3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.5) and Minor Salivary Gland (x4.2).

SOURCE GeneReport for Unigene cluster for CBR3-AS1 Gene:

Hs.651214
genes like me logo Genes that share expression patterns with CBR3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBR3-AS1 Gene

Orthologs for CBR3-AS1 Gene

Evolution for CBR3-AS1 Gene

ENSEMBL:
Gene Tree for CBR3-AS1 (if available)
TreeFam:
Gene Tree for CBR3-AS1 (if available)

No data available for Orthologs for CBR3-AS1 Gene

Paralogs for CBR3-AS1 Gene

No data available for Paralogs for CBR3-AS1 Gene

Variants for CBR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CBR3-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1056892 drug-response 36,146,408(+) GGACT(A/G)TGGAG intron-variant, reference, missense
rs1000289287 -- 36,154,674(+) CACCT(C/G)CCTCG intron-variant
rs1000363840 -- 36,152,187(+) ACCTT(C/T)AGTTC intron-variant
rs1000526584 -- 36,142,317(+) GTCCC(A/C)GCTAC intron-variant, downstream-variant-500B
rs1000667343 -- 36,158,067(+) GTGCT(C/G)GGATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CBR3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4427n100 CNV gain 25217958
dgv4428n100 CNV gain 25217958
dgv7832n54 CNV gain 21841781
dgv813e214 CNV gain 21293372
esv1434184 CNV deletion 17803354
esv2751927 CNV gain 17911159
esv2751928 CNV gain 17911159
esv2763686 CNV gain+loss 21179565
esv33578 CNV loss 17666407
esv3568175 CNV loss 25503493
esv3575388 CNV gain 25503493
esv3646963 CNV gain 21293372
nsv1071754 CNV deletion 25765185
nsv459249 CNV gain 19166990
nsv516175 CNV gain 19592680
nsv587464 CNV gain 21841781
nsv587466 CNV gain 21841781
nsv587469 CNV loss 21841781
nsv979535 CNV duplication 23825009

Relevant External Links for CBR3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBR3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CBR3-AS1 Gene

Disorders for CBR3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CBR3-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, hereditary, 5
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CBR3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CBR3-AS1
genes like me logo Genes that share disorders with CBR3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CBR3-AS1 Gene

Publications for CBR3-AS1 Gene

  1. LncRNA PlncRNA-1 Promotes Colorectal Cancer Cell Progression by Regulating PI3K/Akt Signaling Pathway. (PMID: 28835319) Song W … Zhang M (Oncology research 2017) 2 3 60
  2. Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage. (PMID: 24337686) Wang CM … Cao XF (Digestive diseases and sciences 2014) 2 3 60
  3. The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. (PMID: 22264502) Cui Z … Sun Y (Urologic oncology 2013) 2 3 60
  4. MiR-34c and PlncRNA1 mediated the function of intestinal epithelial barrier by regulating tight junction proteins in inflammatory bowel disease. (PMID: 28153728) Chen T … Huang Z (Biochemical and biophysical research communications 2017) 3 60
  5. A feed-forward regulatory loop between androgen receptor and PlncRNA-1 promotes prostate cancer progression. (PMID: 26808578) Fang Z … Sun Y (Cancer letters 2016) 3 60

Products for CBR3-AS1 Gene

Sources for CBR3-AS1 Gene

Content
Loading form....