CBLN4 Gene
protein-coding GIFtS : 49
GCID: GC20 M054572
cerebellin 4 precursor (Previous name: cerebellin precursor-like 1 ) (Previous symbol: CBLNL1 )
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Aliasesfor CBLN4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cerebellin 4 Precursor 1 2 CBLNL11 2 3 Cerebellin Precursor-Like 11 2 Cerebellin-Like Glycoprotein 12 3 DJ885A10.11 Cerebellin-41
Export aliases for CBLN4 gene to outside databases Previous GC identifers: GC20M054005 GC20M051353
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Summariesfor CBLN4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CBLN4 : This gene encodes a member of a family of small secreted proteins containing C1Q domains. Members of this family are involved in regulation of neurexin signalling during synapse development. The mouse homolog of the protein encoded by this gene competes with netrin to bind to the deleted in colorectal cancer receptor. (provided by RefSeq, Aug 2012) UniProtKB/Swiss-Prot: CBLN4_HUMAN, Q9NTU7 Function : May be involved in synaptic functions in the CNS. Can enable ER export and secretion of CBLN3 (By similarity)
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Genomic Viewsfor CBLN4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000020.10 NC_018931.1 NT_011362.10 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CBLN4 gene promoter: TBP Bach1 p53 Nkx2-5 Tal-1beta GATA-1 Arnt FAC1 Nkx6-1 ITF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for CBLN4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CBLN4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 20q13 Ensembl cytogenetic band: 20q13.2 HGNC cytogenetic band: 20q13 CBLN4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20M054572: view genomic region
(about GC identifiers )
Start:
54,572,496 bp from pter
End:
54,580,528 bp from pter
Size:
8,033 bases
Orientation:
minus strand
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Proteinsfor CBLN4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CBLN4_HUMAN, Q9NTU7 (See
protein sequence )Recommended Name: Cerebellin-4 precursor Size : 201 amino acids; 21808 Da
Subunit : Homohexamer; disulfide-linked homotrimers. The trimers are assembled via the globular C1q domains. The trimersassociate via N-terminal cysteine residues to form disulfide-linked hexamers. May interact with CBLN1, CBLN2 and CBLN3 (By similarity)
Subcellular location : Secreted (By similarity). Cell junction, synapse (By similarity)Explore the universe of human proteins at neXtProt for CBLN4: NX_Q9NTU7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NTU7 CBLN4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_542184.1 ENSEMBL proteins: ENSP00000064571 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
CBLN4 for ontologies About GeneDecksing CBLN4 Antibody Products: Assay Products for CBLN4:
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Protein
Domains / Familiesfor CBLN4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CBLN4 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NTU7 ProtoNet protein and cluster: Q9NTU7
1 Blocks protein family : IPB001073 Complement C1q protein UniProtKB/Swiss-Prot: CBLN4_HUMAN, Q9NTU7 Similarity : Contains 1 C1q domain
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Functionfor CBLN4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CBLN4_HUMAN, Q9NTU7 Function : May be involved in synaptic functions in the CNS. Can enable ER export and secretion of CBLN3 (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN4OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CBLN4 (NM_080617 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CBLN4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CBLN4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CBLN4
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
-- --
CBLN4 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for CBLN4 :Animal Models: Mouse knock-outs for CBLN4: Cbln4 tm1Jim Cbln4 tm1Lex 1 MGI mutant phenotype (inferred from 2 alleles ) (MGI details for Cbln4) :
CBLN4 for phenotypes About GeneDecksing
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Pathways & Interactionsfor CBLN4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CBLN4 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for CBLN4 (Q9NTU7 3 ENSP00000064571 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0009306 protein secretion
IEA --
CBLN4 for ontologies About GeneDecksing
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Drugs & Compoundsfor CBLN4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CBLN4 Search CenterWatch for drugs/clinical trials and news about CBLN4
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Transcriptsfor CBLN4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CBLN4 gene: NM_080617.5 Unigene Clusters for CBLN4:
Cerebellin 4 precursor Hs.126141 [show with all ESTs ] , Hs.741877 [show with all ESTs ] Unigene Representative Sequences: BC047076 , NM_080617 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000064571 (uc002xxa.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN4OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CBLN4 (NM_080617 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CBLN4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CBLN4
Additional cDNA sequence: AK289640.1 AY358527.1 BC050026.1 BC069402.1 BC069488.1 BC069516.1
1 DOTS entry : DT.97797762
23 AceView cDNA sequences :
NM_080617 BC069402 BC069488 BC069516 AY358527 BX093493 AV722278 BC047076 BQ722274 AA868507 BX506987 BC050026 BF445600 BI668562 AW074518 BG704824 CD244520 CA397204 AV721267 AI468259 BU781883 AL044686 BI669085 GeneLoc Exon Structure
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Expression for CBLN4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CBLN4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ACCACTTTAT
About this image CBLN4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CBLN4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CBLN4 SOURCE GeneReport for Unigene clusters: Hs.126141 Hs.741877 SABiosciences Custom PCR Arrays for CBLN4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CBLN4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CBLN4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CBLN4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CBLN4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CBLN4
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Orthologsfor CBLN4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CBLN4 gene from 5/13 species (see all 13 ) About this table
ENSEMBL Gene Tree for CBLN4 (if available)TreeFam Gene Tree for CBLN4 (if available)
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Paralogsfor CBLN4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CBLN4 gene CBLN2 2 CBLN1 2 CAPRIN1 2 CBLN3 2 CAPRIN2 2 4 SIMAP similar genes for CBLN4 using alignment to 1 protein entry: CBLN4_HUMAN :CBLN2 CBLN1 CBLN3 CAPRIN2
CBLN4 for paralogs About GeneDecksing
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Genomic Variantsfor CBLN4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 20 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CBLN4 (54572496 - 54580528 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CBLN4: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CBLN4
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Disorders
/ Diseasesfor CBLN4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CBLN4 for disorders About GeneDecksing
OMIM gene information: 615029
OMIM disorders : --1 disease for CBLN4 : About MalaCards colorectal cancer Export disorders for CBLN4 gene to outside databases
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Publicationsfor CBLN4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CBLN4 gene, integrated from 9 sources (see all 15 ): (articles sorted by number of sources associating them with CBLN4) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 1 , 2 Zhang Z. and Henzel W.J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 1 , 2 Deloukas P....Rogers J. (2001) Precerebellin-related genes and precerebellin 1 peptide in the adrenal gland of the rat: expression pattern, localization, developmental regulation and effects on corticosteroidogenesis. (PubMed id 19212655) 1 , 9 Rucinski M....Malendowicz L.K. (2009) Glutamate receptor d1 induces preferentially inhibitor y presynaptic differentiation of cortical neurons by interacting with neurexins through cerebellin precursor protein subtypes. (PubMed id 22191730) 1 Yasumura M....Mishina M. (2012) The Cbln family of proteins interact with multiple sig naling pathways. (PubMed id 22220752) 1 Wei P....Morgan J.I. (2012) Differential interactions of cerebellin precursor prot ein (Cbln) subtypes and neurexin variants for synapse formation of cortical neur ons. (PubMed id 21356198) 1 Joo J.Y....Mishina M. (2011) Cbln family proteins promote synapse formation by regu lating distinct neurexin signaling pathways in various brain regions. (PubMed id 21410790) 1 Matsuda K. and Yuzaki M. (2011) Cbln and C1q family proteins: new transneuronal cytoki nes. (PubMed id 18278437) 1 Yuzaki M. (2008)
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External Searches for CBLN4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CBLN4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CBLN4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CBLN4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CBLN4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CBLN4 gene: Search GeneIP for patents involving CBLN4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CBLN4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CBLN4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CBLN4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CBLN4 OriGene Protein Over-expression Lysate for CBLN4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CBLN4 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CBLN4 OriGene Custom Protein Services for CBLN4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CBLN4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CBLN4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CBLN4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CBLN4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CBLN4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CBLN4
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CBLN4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CBLN4
ThermoFisher Antibodies for CBLN4
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CBLN4
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Aliases for CBLN4
Databases for CBLN4
Disorders / Diseases for CBLN4
Domains / Families for CBLN4
Drugs / Compounds for CBLN4
Expression for CBLN4
Function for CBLN4
Genomic Views for CBLN4
Intellectual Property for CBLN4
Orthologs for CBLN4
Paralogs for CBLN4
Pathways / Interactions for CBLN4
Products for CBLN4
Proteins for CBLN4
Publications for CBLN4
Search Box for CBLN4
Summaries for CBLN4
Transcripts for CBLN4
Variants for CBLN4
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