CBLN2 Gene
protein-coding GIFtS : 47
GCID: GC18 M070203
cerebellin 2 precursor
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Aliasesfor CBLN2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cerebellin 2 Precursor 1 2 Cerebellin-21
Export aliases for CBLN2 gene to outside databases Previous GC identifers: GC18U990007 GC18M068352 GC18M068354 GC18M066922
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Summariesfor CBLN2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor CBLN2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000018.9 NC_018929.1 NT_025028.14 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CBLN2 gene promoter: TBP NF-1 USF1 FOXF2 Nkx2-5 FOXL1 Gfi-1 MEF-2A USF-1 aMEF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for CBLN2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CBLN2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 18q22.3 Ensembl cytogenetic band: 18q22.3 HGNC cytogenetic band: 18q22.3 CBLN2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18M070203: view genomic region
(about GC identifiers )
Start:
70,203,915 bp from pter
End:
70,305,756 bp from pter
Size:
101,842 bases
Orientation:
minus strand
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Proteinsfor CBLN2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CBLN2_HUMAN, Q8IUK8 (See
protein sequence )Recommended Name: Cerebellin-2 Size : 224 amino acids; 24084 Da
Subunit : May interact with CBLN1, CBLN3 and CBLN4 (By similarity)
Subcellular location : Membrane; Single-pass membrane protein (Potential)
Secondary accessions : Q53Z56Explore the universe of human proteins at neXtProt for CBLN2: NX_Q8IUK8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8IUK8 CBLN2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_872317.1 ENSEMBL proteins: ENSP00000463771 ENSP00000269503 ENSP00000464490 ENSP00000462632 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005615 extracellular space
IEA -- GO:0016021 integral to membrane
IEA --
CBLN2 for ontologies About GeneDecksing CBLN2 Antibody Products: Assay Products for CBLN2:
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Protein
Domains / Familiesfor CBLN2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CBLN2 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IUK8 ProtoNet protein and cluster: Q8IUK8
1 Blocks protein family : IPB001073 Complement C1q protein UniProtKB/Swiss-Prot: CBLN2_HUMAN, Q8IUK8 Similarity : Contains 1 C1q domain
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Functionfor CBLN2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CBLN2 (NM_182511 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CBLN2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CBLN2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CBLN2
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
-- --
CBLN2 for ontologies About GeneDecksing Animal Models: Mouse knock-out Cbln2 tm1Jim for CBLN2 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Cbln2) :
CBLN2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor CBLN2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CBLN2 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for CBLN2 (Q8IUK8 3 ENSP00000269503 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0051965 positive regulation of synapse assembly
IEA --
CBLN2 for ontologies About GeneDecksing
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Drugs & Compoundsfor CBLN2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CBLN2 Search CenterWatch for drugs/clinical trials and news about CBLN2
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Transcriptsfor CBLN2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CBLN2 gene: NM_182511.3 Unigene Cluster for CBLN2:
Cerebellin 2 precursor Hs.569851 [show with all ESTs ] Unigene Representative Sequence: AK125422 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000585159 (uc002lku.2 ) ENST00000269503 (uc002lkv.2 ) ENST00000581425 ENST00000584764 ENST00000583651 ENST00000581073 ENST00000580889 ENST00000583570 ENST00000582667 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CBLN2 (NM_182511 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CBLN2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CBLN2
Additional cDNA sequence: AK125422.1 AK291364.1 AY359074.1 BC035789.1 BC110843.1
3 DOTS entries : DT.75130678 DT.97783826
DT.100684052 24/29 AceView cDNA sequences (see all 29 ):
CB118124 AY359074 AW162063 NM_182511 BU734103 BX460500 T17432 BU102038 BC035789 BX409761 AK125422 BX409762 BM987080 AA340432 AA332557 BI917364 BM723762 BI871154 CA396230 BE644911 R36770 AW163243 AI815729 AW965432 GeneLoc Exon Structure
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Expression for CBLN2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CBLN2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CACCTGGCGA
About this image CBLN2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CBLN2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CBLN2 SOURCE GeneReport for Unigene cluster: Hs.569851 SABiosciences Custom PCR Arrays for CBLN2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CBLN2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CBLN2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CBLN2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CBLN2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CBLN2
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Orthologsfor CBLN2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CBLN2 gene from 4/13 species (see all 13 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
CBLN21
cerebellin 2
88.89(n) 95.65(a)
 
421019 NM_001171768.1 NP_001165239.1
lizard (Anolis carolinensis)
Reptilia
CBLN26
--
84(a)
1 ↔ 1
4(48247810-48254792)
African clawed frog (Xenopus laevis)
Amphibia
cbln2-prov2
cerebellin 2 precursor protein
80.96(n)
 
BC054217.1
zebrafish (Danio rerio)
Actinopterygii
cbln2b1
cerebellin 2b precursor
71.38(n) 82.83(a)
 
560583 NM_001098738.1 NP_001092208.1
ENSEMBL Gene Tree for CBLN2 (if available)TreeFam Gene Tree for CBLN2 (if available)
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Paralogsfor CBLN2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CBLN2 gene CBLN1 2 CBLN4 2 CAPRIN1 2 CBLN3 2 CAPRIN2 2 5 SIMAP similar genes for CBLN2 using alignment to 3 protein entries: CBLN2_HUMAN (see all proteins ):CBLN4 CBLN1 CBLN3 CAPRIN2 COL8A2
CBLN2 for paralogs About GeneDecksing
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Genomic Variantsfor CBLN2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 18 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CBLN2 (70203915 - 70305756 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CBLN2: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CBLN2
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Disorders
/ Diseasesfor CBLN2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CBLN2 for disorders About GeneDecksing
OMIM gene information: 600433
OMIM disorders : --1 disease for CBLN2 : About MalaCards multiple sclerosis Export disorders for CBLN2 gene to outside databases
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Publicationsfor CBLN2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CBLN2 gene, integrated from 9 sources (see all 11 ): (articles sorted by number of sources associating them with CBLN2) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Genomic structure and mapping of precerebellin and a precerebellin-related gene. (PubMed id 7877445) 1 , 3 Kavety B....Morgan J.I. (1994) Investigation of single nucleotide polymorphisms and b iological pathways associated with response to TNFa inhibitors in patients with rheumatoid arthritis. (PubMed id 22569225) 1 Krintel S.B....Hetland M.L. (2012) Comparison of Cbln1 and Cbln2 functions using transgen ic and knockout mice. (PubMed id 22117778) 1 Rong Y....Morgan J.I. (2012) Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PubMed id 19010793) 1 Baranzini S.E....Oksenberg J.R. (2008) Cbln1 is essential for interaction-dependent secretion of Cbln3. (PubMed id 17030622) 1 Bao D....Morgan J.I. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Precerebellin-related genes and precerebellin 1 peptide in the adrenal gland of the rat: expression pattern, localization, developmental regulation and effects on corticosteroidogenesis. (PubMed id 19212655) 9 Rucinski M....Malendowicz L.K. (2009)
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External Searches for CBLN2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CBLN2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CBLN2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CBLN2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CBLN2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CBLN2 gene: Search GeneIP for patents involving CBLN2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CBLN2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CBLN2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CBLN2 OriGene Protein Over-expression Lysate for CBLN2 Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for CBLN2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CBLN2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CBLN2 OriGene Custom Protein Services for CBLN2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CBLN2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CBLN2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CBLN2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CBLN2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CBLN2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CBLN2
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CBLN2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CBLN2
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CBLN2
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Aliases for CBLN2
Databases for CBLN2
Disorders / Diseases for CBLN2
Domains / Families for CBLN2
Drugs / Compounds for CBLN2
Expression for CBLN2
Function for CBLN2
Genomic Views for CBLN2
Intellectual Property for CBLN2
Orthologs for CBLN2
Paralogs for CBLN2
Pathways / Interactions for CBLN2
Products for CBLN2
Proteins for CBLN2
Publications for CBLN2
Search Box for CBLN2
Summaries for CBLN2
Transcripts for CBLN2
Variants for CBLN2
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