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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CATSPERB Gene

protein-coding   GIFtS: 45
GCID: GC14M092047

Catsper Channel Auxiliary Subunit Beta

(Previous names: chromosome 14 open reading frame 161, cation channel, sperm-associated,...)
(Previous symbol: C14orf161)
  Search for CATSPERB
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Catsper Channel Auxiliary Subunit Beta1 2     catSper-beta2
C14orf1611 2 3     Cation Channel Sperm-Associated Protein Subunit Beta2
Cation Channel, Sperm-Associated, Beta1 2     Cation Channel, Sperm Associated Beta2
Chromosome 14 Open Reading Frame 1611     CatSper-beta3
CatSper(beta)2     

External Ids:    HGNC: 205001   Entrez Gene: 798202   Ensembl: ENSG000001339627   OMIM: 6111695   UniProtKB: Q9H7T03   

Export aliases for CATSPERB gene to outside databases

Previous GC identifers: GC14M091117 GC14M072223


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CATSPERB Gene: 
CATSPERB (catsper channel auxiliary subunit beta) is a protein-coding gene. Among its related super-pathways are Interaction With The Zona Pellucida.

UniProtKB/Swiss-Prot: CTSRB_HUMAN, Q9H7T0
Function: Probably involved in sperm cell hyperactivation via its association with CATSPER1. Sperm cell
hyperactivation is needed for sperm motility which is essential late in the preparation of sperm for
fertilization (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NT_026437.12  NC_018925.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CATSPERB gene promoter:
         TBP   Tal-1   Tal-1beta   E47   Evi-1   C/EBPalpha   MEF-2A   Chx10   aMEF-2   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCATSPERB promoter sequence
   Search SABiosciences Chromatin IP Primers for CATSPERB

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CATSPERB


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.12   Ensembl cytogenetic band:  14q32.12   HGNC cytogenetic band: 14q32.12

CATSPERB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CATSPERB gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M092047:  view genomic region     (about GC identifiers)

Start:
92,047,040 bp from pter      End:
92,247,051 bp from pter
Size:
200,012 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CTSRB_HUMAN, Q9H7T0 (See protein sequence)
Recommended Name: Cation channel sperm-associated protein subunit beta  
Size: 1116 amino acids; 126924 Da
Subunit: Component of the CatSper complex (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein (By similarity)
Secondary accessions: A0AV51
Alternative splicing: 2 isoforms:  Q9H7T0-1   Q9H7T0-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CATSPERB: NX_Q9H7T0

Explore proteomics data for CATSPERB at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9H7T0

  • CATSPERB Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CATSPERB Protein Expression
    REFSEQ proteins: NP_079040.2  
    ENSEMBL proteins: 
     ENSP00000451083   ENSP00000256343   ENSP00000450878   ENSP00000452224   ENSP00000451455  
     ENSP00000451047  
    Reactome Protein details: Q9H7T0
    Human Recombinant Protein Products for CATSPERB: 
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    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Cloud-Clone Corp. 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0005929cilium IEA--
    GO:0036128CatSper complex ISS--

    CATSPERB for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q9H7T0


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: CTSRB_HUMAN, Q9H7T0
    Function: Probably involved in sperm cell hyperactivation via its association with CATSPER1. Sperm cell
    hyperactivation is needed for sperm motility which is essential late in the preparation of sperm for
    fertilization (By similarity)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    CATSPERB for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for CATSPERB About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Fertilization
    Fertilization0.38
    Sperm Motility And Taxes0.35
    Reproduction0.38

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    3        Reactome Pathways for CATSPERB
        Fertilization
    Sperm Motility And Taxes
    Reproduction



    CATSPERB for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CATSPERB

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/36 Interacting proteins for CATSPERB (ENSP000002563434) via UniProtKB, MINT, STRING, and/or I2D (see all 36)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    AKAP6ENSP000002809794STRING: ENSP00000280979
    CACNA1BENSP000002775494STRING: ENSP00000277549
    CACNA1CENSP000002663764STRING: ENSP00000266376
    CACNA1DENSP000002881394STRING: ENSP00000288139
    CACNA1EENSP000003565454STRING: ENSP00000356545
    About this table

    Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007275multicellular organismal development IEA--
    GO:0007283spermatogenesis IEA--
    GO:0007338single fertilization TAS--
    GO:0030154cell differentiation IEA--
    GO:0032504multicellular organism reproduction TAS--

    CATSPERB for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CATSPERB (CTSRB)

    Search CenterWatch for drugs/clinical trials and news about CATSPERB / CTSRB

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CATSPERB gene: 
    NM_024764.2  

    Unigene Cluster for CATSPERB:

    Catsper channel auxiliary subunit beta
    Hs.131755  [show with all ESTs]
    Unigene Representative Sequence: AK126034
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000557036 ENST00000256343(uc010aub.1 uc001xzs.1) ENST00000556429
    ENST00000556901 ENST00000553329 ENST00000554560 ENST00000556661 ENST00000553676

    miRNA
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    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate CATSPERB
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    Inhib. RNA
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    Additional mRNA sequence: 

    AK024360.1 AK126034.1 BC016315.1 BC126214.1 BC126216.1 

    3 DOTS entries:

    DT.95177112  DT.203376  DT.91897227 

    24/168 AceView cDNA sequences (see all 168):

    AU139100 BU676496 AW605686 BX498074 AA361684 BM021374 AI148628 AA578758 
    AI910436 NM_024764 CF528740 AI470643 CB153880 AA314397 AI351894 AI741162 
    AI280362 AA456598 BU681698 BM023130 BF430947 AA360896 AA075405 AW937208 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for CATSPERB    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^
    SP1:                                                                                                                                                            
    SP2:                                                                                            -                                                               

    ExUns: 26 ^ 27a · 27b
    SP1:                  
    SP2:                  


    ECgene alternative splicing isoforms for CATSPERB

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CATSPERB expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGATCATAA
    CATSPERB Expression
    About this image


    See CATSPERB Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CATSPERB

    SOURCE GeneReport for Unigene cluster: Hs.131755
        SABiosciences Custom PCR Arrays for CATSPERB
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CATSPERB

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for CATSPERB gene from 2/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Catsperb1 , 5 cation channel, sperm-associated, beta1, 5 69.96(n)1
    56.88(a)1
      12 (51.23 cM)5
    2710361  NM_173023.21  NP_766611.21 
     1014046735 
    lizard
    (Anolis carolinensis)
    Reptilia CATSPERB6
    Uncharacterized protein
    41(a)
    1 ↔ 1
    1(11879018-11970593)


    ENSEMBL Gene Tree for CATSPERB (if available)
    TreeFam Gene Tree for CATSPERB (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3120 SNPs in CATSPERB are shown (see all 3120)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs7158641,2
    C,F,A,H--72223387(-) TATATC/ATCTGT 1 -- ds500126Minor allele frequency- A:0.18NA NS EA WA 2832
    rs1124771161,2
    C,F--72223431(+) ATAAAT/CCAATA 1 -- ds50012Minor allele frequency- C:0.33CSA 3
    rs7168721,2
    C,F,A,H--72223452(+) ACACCA/GCGTTC 1 -- ds500114Minor allele frequency- G:0.28NA WA CSA EA 540
    rs7168731,2
    C,F,A--72223454(+) ACCGCG/ATTCTT 1 -- ds500110Minor allele frequency- A:0.19NA EA CSA WA 614
    rs1176472361,2
    C,F--72223483(+) GGTCAC/AATTTC 1 -- ds50011Minor allele frequency- A:0.01NA 120
    rs1854145511,2
    --72223612(+) TCACCC/TTGGCA 1 -- ds50010--------
    rs1902248861,2
    --72223665(+) CAGGGA/GTTCTG 1 -- ds50010--------
    rs1834138671,2
    --72223684(+) GAATGC/GGCTCC 1 -- ds50010--------
    rs1871288591,2
    --72223719(+) GAACAC/TCTGTT 1 -- ds50010--------
    rs101485051,2
    C,F,H--72223777(+) AAGATC/TTTCAA 1 -- ds50016Minor allele frequency- T:0.02NS EA WA 404

    HapMap Linkage Disequilibrium report for CATSPERB (92047040 - 92247051 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for CATSPERB:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2589440CNV Deletion19546169
    esv1003307CNV Insertion20482838
    esv2430078CNV Insertion19546169
    nsv1396CNV Insertion18451855
    esv1421109CNV Insertion17803354
    esv273550CNV Insertion20981092
    esv267410CNV Insertion20981092

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CATSPERB for disorders           About MalaCards
    OMIM gene information: 611169    OMIM disorders: --


    CATSPERB for disorders           About GeneDecksing

    Genetic Association Database (GAD): CATSPERB
    Human Genome Epidemiology (HuGE) Navigator: CATSPERB (1 document)

    Export disorders for CATSPERB gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CATSPERB gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CATSPERB)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. CatSperbeta, a novel transmembrane protein in the CatSper channel complex. (PubMed id 17478420)1, 3 Liu J....Ren D. (2007)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
    4. Genome-wide association study of bone mineral density in premenopausal European-American women and replication in African-American w omen. (PubMed id 20164292)1 Koller D.L....Foroud T. (2010)
    5. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (2006)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    8. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PubMed id 10737800)1 Dias Neto E....Simpson A.J.G. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 79820 HGNC: 20500 AceView: MTAC2D1 Ensembl:ENSG00000133962 euGenes: HUgn79820
    ECgene: CATSPERB H-InvDB: CATSPERB

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CATSPERB Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CATSPERB gene:
    Search GeneIP for patents involving CATSPERB

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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     QIAGEN SeqTarget long-range PCR primers for resequencing CATSPERB
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CATSPERB
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CATSPERB
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     Search LifeMap BioReagents cell lines for CATSPERB
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     ThermoFisher Antibody for CATSPERB
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CATSPERB
     inGenious Targeting Laboratory - Custom generated mouse model solutions for CATSPERB
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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