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Aliases for CATSPER2P1 Gene

Aliases for CATSPER2P1 Gene

  • Cation Channel, Sperm Associated 2 Pseudogene 1 2 3

External Ids for CATSPER2P1 Gene

Previous GeneCards Identifiers for CATSPER2P1 Gene

  • GC15U900629
  • GC15M041817
  • GC15M044019
  • GC15M020851

Summaries for CATSPER2P1 Gene

Entrez Gene Summary for CATSPER2P1 Gene

  • Catsper genes belong to a family of putative cation channels that are specific to spermatozoa and localize to the flagellum. This gene is part of a tandem repeat on chromosome 15q15; this copy of the gene is thought to be a pseudogene. [provided by RefSeq, Oct 2008]

GeneCards Summary for CATSPER2P1 Gene

CATSPER2P1 (Cation Channel, Sperm Associated 2 Pseudogene 1) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATSPER2P1 Gene

Genomics for CATSPER2P1 Gene

Regulatory Elements for CATSPER2P1 Gene

Genomic Location for CATSPER2P1 Gene

Start:
43,726,918 bp from pter
End:
43,747,094 bp from pter
Size:
20,177 bases
Orientation:
Minus strand

Genomic View for CATSPER2P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CATSPER2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATSPER2P1 Gene

Proteins for CATSPER2P1 Gene

Post-translational modifications for CATSPER2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATSPER2P1 Gene

Domains for CATSPER2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATSPER2P1 Gene

Function for CATSPER2P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CATSPER2P1 Gene

Localization for CATSPER2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CATSPER2P1 Gene

Pathways for CATSPER2P1 Gene

SuperPathways for CATSPER2P1 Gene

No Data Available

Interacting Proteins for CATSPER2P1 Gene

Gene Ontology (GO) - Biological Process for CATSPER2P1 Gene

None

No data available for Pathways by source for CATSPER2P1 Gene

Transcripts for CATSPER2P1 Gene

mRNA/cDNA for CATSPER2P1 Gene

(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CATSPER2P1 Gene

Cation channel, sperm associated 2 pseudogene 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CATSPER2P1
    • Block miRNA regulation of CATSPER2P1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for CATSPER2P1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CATSPER2P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for CATSPER2P1 Gene

    No ASD Table

    Relevant External Links for CATSPER2P1 Gene

    GeneLoc Exon Structure for
    CATSPER2P1
    ECgene alternative splicing isoforms for
    CATSPER2P1

    Expression for CATSPER2P1 Gene

    mRNA expression in normal human tissues for CATSPER2P1 Gene

    SOURCE GeneReport for Unigene cluster for CATSPER2P1 Gene Hs.253260

    genes like me logo Genes that share expressions with CATSPER2P1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CATSPER2P1 Gene

    Orthologs for CATSPER2P1 Gene

    Evolution for CATSPER2P1 Gene

    ENSEMBL:
    Gene Tree for CATSPER2P1 (if available)
    TreeFam:
    Gene Tree for CATSPER2P1 (if available)

    No data available for Orthologs for CATSPER2P1 Gene

    Paralogs for CATSPER2P1 Gene

    No data available for Paralogs for CATSPER2P1 Gene

    Variants for CATSPER2P1 Gene

    Sequence variations from dbSNP and Humsavar for CATSPER2P1 Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs2412810 -- 43,738,327(+) CTGTT(G/T)CCAGG intron-variant
    rs2597072 -- 43,736,584(+) aaata(A/G)tgctt nc-transcript-variant
    rs2597074 -- 43,739,152(+) CTATG(C/T)TTCAA intron-variant
    rs2597075 -- 43,739,213(+) AAATA(C/T)ATAAT intron-variant
    rs2597076 -- 43,739,230(+) TTACA(A/G)GGTAG intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for CATSPER2P1 Gene

    Variant ID Type Subtype PubMed ID
    dgv741e1 CNV Complex 17122850
    dgv742e1 CNV Complex 17122850
    dgv2372n71 CNV Gain 21882294
    dgv743e1 CNV Complex 17122850
    esv33661 CNV Loss 17666407

    Relevant External Links for CATSPER2P1 Gene

    HapMap Linkage Disequilibrium report
    CATSPER2P1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CATSPER2P1 Gene

    Disorders for CATSPER2P1 Gene

    No disorders were found for CATSPER2P1 Gene.

    No data available for UniProtKB/Swiss-Prot for CATSPER2P1 Gene

    Publications for CATSPER2P1 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    2. CATSPER2, a human autosomal nonsyndromic male infertility gene. (PMID: 12825070) Avidan N. … Beckmann J.S. (Eur. J. Hum. Genet. 2003) 3
    3. Sensorineural deafness and male infertility: a contiguous gene deletion syndrome. (PMID: 17098888) Zhang Y. … Smith R.J.H. (J. Med. Genet. 2007) 3
    4. Comparative genomics search for losses of long-established genes on the human lineage. (PMID: 18085818) Zhu J. … Haussler D. (PLoS Comput. Biol. 2007) 3
    5. Evolutionary genomics reveals lineage-specific gene loss and rapid evolution of a sperm-specific ion channel complex: CatSpers and CatSperbeta. (PMID: 18974790) Cai X. … Clapham D.E. (PLoS ONE 2008) 3

    Products for CATSPER2P1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate CATSPER2P1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for CATSPER2P1
      • Block miRNA regulation of CATSPER2P1 using miScript Target Protectors

      Sources for CATSPER2P1 Gene

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