Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CATSPER2P1 Gene

Aliases for CATSPER2P1 Gene

  • Cation Channel Sperm Associated 2 Pseudogene 1 2 3 5
  • Cation Channel, Sperm Associated 2 Pseudogene 1 2

External Ids for CATSPER2P1 Gene

Previous GeneCards Identifiers for CATSPER2P1 Gene

  • GC15U900629
  • GC15M041817
  • GC15M044019
  • GC15M020851

Summaries for CATSPER2P1 Gene

Entrez Gene Summary for CATSPER2P1 Gene

  • Catsper genes belong to a family of putative cation channels that are specific to spermatozoa and localize to the flagellum. This gene is part of a tandem repeat on chromosome 15q15; this copy of the gene is thought to be a pseudogene. [provided by RefSeq, Oct 2008]

GeneCards Summary for CATSPER2P1 Gene

CATSPER2P1 (Cation Channel Sperm Associated 2 Pseudogene 1) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATSPER2P1 Gene

Genomics for CATSPER2P1 Gene

Regulatory Elements for CATSPER2P1 Gene

Enhancers for CATSPER2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G043823 1.2 ENCODE 13.3 -78.9 -78935 5.7 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 SSRP1 GLIS1 ENSG00000249839 CTDSPL2 TUBGCP4 MFAP1 ADAL RPS3AP47 ELL3 ENSG00000259563 EIF3J-AS1 HNRNPMP1
GH15G043183 1.1 ENCODE 10.8 +561.7 561717 3.0 HDGF PKNOX1 FOXA2 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF207 ZNF143 CCNDBP1 CATSPER2P1 ZSCAN29 ADAL ENSG00000261687 EPB42
GH15G044425 1.4 ENCODE dbSUPER 6.2 -680.7 -680702 3.8 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 SIN3A FEZF1 DMAP1 CTDSPL2 EIF3J-AS1 HNRNPMP1 ENSG00000249839 TP53BP1 MFAP1 ENSG00000259659 CATSPER2P1 GC15P044434
GH15G044080 0.8 ENCODE dbSUPER 9.9 -334.2 -334224 1.6 SMARCA4 JUN CEBPB FOS CATSPER2P1 GAPDHP55 GC15P044099
GH15G043526 1.1 dbSUPER 6.9 +217.5 217451 5.8 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 FOS ZSCAN29 ADAL CATSPER2 CATSPER2P1 GC15P043528 GC15M043530
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CATSPER2P1 on UCSC Golden Path with GeneCards custom track

Promoters for CATSPER2P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000075868 193 2600 HDGF FOXA2 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP3 SP5

Genomic Location for CATSPER2P1 Gene

Chromosome:
15
Start:
43,726,918 bp from pter
End:
43,747,094 bp from pter
Size:
20,177 bases
Orientation:
Minus strand

Genomic View for CATSPER2P1 Gene

Genes around CATSPER2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CATSPER2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATSPER2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATSPER2P1 Gene

Proteins for CATSPER2P1 Gene

Post-translational modifications for CATSPER2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATSPER2P1 Gene

Domains & Families for CATSPER2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATSPER2P1 Gene

Function for CATSPER2P1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATSPER2P1 Gene

Localization for CATSPER2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CATSPER2P1 Gene

Pathways & Interactions for CATSPER2P1 Gene

SuperPathways for CATSPER2P1 Gene

No Data Available

Interacting Proteins for CATSPER2P1 Gene

Gene Ontology (GO) - Biological Process for CATSPER2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CATSPER2P1 Gene

Drugs & Compounds for CATSPER2P1 Gene

No Compound Related Data Available

Transcripts for CATSPER2P1 Gene

mRNA/cDNA for CATSPER2P1 Gene

(4) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CATSPER2P1 Gene

Cation channel, sperm associated 2 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CATSPER2P1 Gene

No ASD Table

Relevant External Links for CATSPER2P1 Gene

GeneLoc Exon Structure for
CATSPER2P1
ECgene alternative splicing isoforms for
CATSPER2P1

Expression for CATSPER2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CATSPER2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CATSPER2P1 Gene:

CATSPER2P1

SOURCE GeneReport for Unigene cluster for CATSPER2P1 Gene:

Hs.253260
genes like me logo Genes that share expression patterns with CATSPER2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATSPER2P1 Gene

Orthologs for CATSPER2P1 Gene

Evolution for CATSPER2P1 Gene

ENSEMBL:
Gene Tree for CATSPER2P1 (if available)
TreeFam:
Gene Tree for CATSPER2P1 (if available)

No data available for Orthologs for CATSPER2P1 Gene

Paralogs for CATSPER2P1 Gene

No data available for Paralogs for CATSPER2P1 Gene

Variants for CATSPER2P1 Gene

Sequence variations from dbSNP and Humsavar for CATSPER2P1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000065597 -- 43,741,528(+) TCCCT(C/T)CTACC intron-variant
rs1000174058 -- 43,735,836(+) CTCGG(C/G)TCACT downstream-variant-500B
rs1000247491 -- 43,735,519(+) AAGAT(A/G)AGCAG downstream-variant-500B
rs1000416762 -- 43,741,294(+) CAAGC(A/C)CCAGG intron-variant
rs1000527602 -- 43,737,267(+) TTGCG(A/G)TCCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CATSPER2P1 Gene

Variant ID Type Subtype PubMed ID
dgv734e212 CNV loss 25503493
esv2760028 CNV gain+loss 17122850
esv33661 CNV loss 17666407
esv3569520 CNV gain 25503493
esv3636297 CNV gain 21293372
esv3636298 CNV loss 21293372
nsv1134439 CNV deletion 24896259
nsv976928 CNV duplication 23825009

Relevant External Links for CATSPER2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATSPER2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CATSPER2P1 Gene

Disorders for CATSPER2P1 Gene

Relevant External Links for CATSPER2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CATSPER2P1

No disorders were found for CATSPER2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CATSPER2P1 Gene

Publications for CATSPER2P1 Gene

  1. Evolutionary genomics reveals lineage-specific gene loss and rapid evolution of a sperm-specific ion channel complex: CatSpers and CatSperbeta. (PMID: 18974790) Cai X. … Clapham D.E. (PLoS ONE 2008) 3 64
  2. Sensorineural deafness and male infertility: a contiguous gene deletion syndrome. (PMID: 17098888) Zhang Y. … Smith R.J.H. (J. Med. Genet. 2007) 3 64
  3. Comparative genomics search for losses of long-established genes on the human lineage. (PMID: 18085818) Zhu J. … Haussler D. (PLoS Comput. Biol. 2007) 3 64
  4. CATSPER2, a human autosomal nonsyndromic male infertility gene. (PMID: 12825070) Avidan N. … Beckmann J.S. (Eur. J. Hum. Genet. 2003) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CATSPER2P1 Gene

Sources for CATSPER2P1 Gene

Content
Loading form....