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Aliases for CATIP-AS2 Gene

Subcategory (RNA class) for CATIP-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CATIP-AS2 Gene

  • CATIP Antisense RNA 2 2 3 5

External Ids for CATIP-AS2 Gene

Previous GeneCards Identifiers for CATIP-AS2 Gene

  • GC00U936141

Summaries for CATIP-AS2 Gene

GeneCards Summary for CATIP-AS2 Gene

CATIP-AS2 (CATIP Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATIP-AS2 Gene

Genomics for CATIP-AS2 Gene

Regulatory Elements for CATIP-AS2 Gene

Enhancers for CATIP-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G218356 1.2 Ensembl ENCODE 0.7 +0.9 879 1.8 ELF3 PKNOX1 ATF1 NFIB ARID4B BMI1 ZNF48 RAD21 SCRT2 CREM ENSG00000261338 TMBIM1 PNKD AAMP SLC11A1 CATIP-AS2 CATIP
GH02G218359 1.2 Ensembl ENCODE 0.7 -3.9 -3934 5.0 HDAC1 NFIB TCF12 ZNF766 ELK1 EGR1 SCRT2 EGR2 ZNF263 ZBTB11 CATIP ENSG00000261338 PNKD CATIP-AS2 CATIP-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CATIP-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CATIP-AS2 Gene

Chromosome:
2
Start:
218,326,241 bp from pter
End:
218,357,966 bp from pter
Size:
31,726 bases
Orientation:
Minus strand

Genomic View for CATIP-AS2 Gene

Genes around CATIP-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CATIP-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATIP-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATIP-AS2 Gene

Proteins for CATIP-AS2 Gene

Post-translational modifications for CATIP-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATIP-AS2 Gene

Domains & Families for CATIP-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATIP-AS2 Gene

Function for CATIP-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATIP-AS2 Gene

Localization for CATIP-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CATIP-AS2 Gene

Pathways & Interactions for CATIP-AS2 Gene

SuperPathways for CATIP-AS2 Gene

No Data Available

Interacting Proteins for CATIP-AS2 Gene

Gene Ontology (GO) - Biological Process for CATIP-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CATIP-AS2 Gene

Drugs & Compounds for CATIP-AS2 Gene

No Compound Related Data Available

Transcripts for CATIP-AS2 Gene

mRNA/cDNA for CATIP-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CATIP-AS2 Gene

No ASD Table

Relevant External Links for CATIP-AS2 Gene

GeneLoc Exon Structure for
CATIP-AS2
ECgene alternative splicing isoforms for
CATIP-AS2

Expression for CATIP-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CATIP-AS2 Gene

genes like me logo Genes that share expression patterns with CATIP-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATIP-AS2 Gene

Orthologs for CATIP-AS2 Gene

Evolution for CATIP-AS2 Gene

ENSEMBL:
Gene Tree for CATIP-AS2 (if available)
TreeFam:
Gene Tree for CATIP-AS2 (if available)

No data available for Orthologs for CATIP-AS2 Gene

Paralogs for CATIP-AS2 Gene

No data available for Paralogs for CATIP-AS2 Gene

Variants for CATIP-AS2 Gene

Sequence variations from dbSNP and Humsavar for CATIP-AS2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs115429065 Likely benign 218,345,973(+) CTGGC(C/G)CTTTG intron-variant, utr-variant-3-prime
rs139122042 Likely benign 218,341,606(+) CAGGA(C/T)GGCAT intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs140903787 Likely benign 218,345,963(+) TGACA(C/T)TCATC intron-variant, utr-variant-3-prime
rs141201996 Likely benign 218,345,588(+) AATGC(C/T)GGCTG intron-variant, utr-variant-3-prime
rs141506076 Likely benign 218,341,569(+) CCGGC(A/G)GCACC intron-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CATIP-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2763102 CNV loss 21179565
esv3594336 CNV gain 21293372
nsv519829 CNV loss 19592680
nsv961563 CNV duplication 23825009

Relevant External Links for CATIP-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATIP-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CATIP-AS2 Gene

Disorders for CATIP-AS2 Gene

Relevant External Links for CATIP-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CATIP-AS2

No disorders were found for CATIP-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CATIP-AS2 Gene

Publications for CATIP-AS2 Gene

  1. Expressed sequence tag analysis of adult human iris for the NEIBank project: steroid-response factors and similarities with retinal pigment epithelium. (PMID: 12107412) Wistow G. … Peterson K. (Mol. Vis. 2002) 3 64

Products for CATIP-AS2 Gene

Sources for CATIP-AS2 Gene

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