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Aliases for CATIP-AS1 Gene

Subcategory (RNA class) for CATIP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CATIP-AS1 Gene

  • CATIP Antisense RNA 1 2 3 5

External Ids for CATIP-AS1 Gene

Previous GeneCards Identifiers for CATIP-AS1 Gene

  • GC02M219232

Summaries for CATIP-AS1 Gene

GeneCards Summary for CATIP-AS1 Gene

CATIP-AS1 (CATIP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATIP-AS1 Gene

Genomics for CATIP-AS1 Gene

Regulatory Elements for CATIP-AS1 Gene

Enhancers for CATIP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G218393 2.1 FANTOM5 Ensembl ENCODE dbSUPER 6 -33.1 -33105 14.4 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 USP37 TMBIM1 AAMP PNKD CYP27A1 CDK5R2 CNOT9 STK36 PTPRN CATIP-AS1
GH02G218281 2 FANTOM5 Ensembl ENCODE dbSUPER 5.6 +77.7 77664 17.9 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000261338 SLC11A1 USP37 CTDSP1 MIR26B ARPC2 PNKD TMBIM1 CATIP-AS1 GPBAR1
GH02G218309 1.7 FANTOM5 Ensembl ENCODE 4.6 +56.2 56158 3.7 HNRNPUL1 HDGF FOXA2 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 FEZF1 ENSG00000261338 AAMP PNKD CNOT9 NHEJ1 USP37 SLC23A3 SLC11A1 BCS1L ANKZF1
GH02G218228 1.4 Ensembl ENCODE dbSUPER 4.6 +137.7 137680 3.7 HDGF YY1 GATA2 EGR1 SCRT2 FOS ETV6 IKZF2 CREM SP5 ENSG00000261338 GPBAR1 AAMP CXCR1 CATIP-AS1 GC02M218215 TRY-ATA1-1
GH02G218248 0.4 dbSUPER 4.8 +118.3 118282 2.0 POLR2A REST ENSG00000261338 ARPC2 CXCR1 RNF25 GPBAR1 CATIP-AS1 TRY-ATA1-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CATIP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CATIP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000130407 2 1001 HDGF ATF1 CREB3L1 YY1 ETS1 ZNF143 JUNB ZNF592 MBD2 HNF4A

Genomic Location for CATIP-AS1 Gene

Chromosome:
2
Start:
218,366,665 bp from pter
End:
218,367,902 bp from pter
Size:
1,238 bases
Orientation:
Minus strand

Genomic View for CATIP-AS1 Gene

Genes around CATIP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CATIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATIP-AS1 Gene

Proteins for CATIP-AS1 Gene

Post-translational modifications for CATIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATIP-AS1 Gene

Domains & Families for CATIP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATIP-AS1 Gene

Function for CATIP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATIP-AS1 Gene

Localization for CATIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CATIP-AS1 Gene

Pathways & Interactions for CATIP-AS1 Gene

SuperPathways for CATIP-AS1 Gene

No Data Available

Interacting Proteins for CATIP-AS1 Gene

Gene Ontology (GO) - Biological Process for CATIP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CATIP-AS1 Gene

Drugs & Compounds for CATIP-AS1 Gene

No Compound Related Data Available

Transcripts for CATIP-AS1 Gene

mRNA/cDNA for CATIP-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CATIP-AS1 Gene

No ASD Table

Relevant External Links for CATIP-AS1 Gene

GeneLoc Exon Structure for
CATIP-AS1
ECgene alternative splicing isoforms for
CATIP-AS1

Expression for CATIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CATIP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CATIP-AS1 Gene

This gene is overexpressed in Whole Blood (x14.6).
genes like me logo Genes that share expression patterns with CATIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATIP-AS1 Gene

Orthologs for CATIP-AS1 Gene

Evolution for CATIP-AS1 Gene

ENSEMBL:
Gene Tree for CATIP-AS1 (if available)
TreeFam:
Gene Tree for CATIP-AS1 (if available)

No data available for Orthologs for CATIP-AS1 Gene

Paralogs for CATIP-AS1 Gene

No data available for Paralogs for CATIP-AS1 Gene

Variants for CATIP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CATIP-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000097055 -- 218,366,957(+) TAGAG(A/G)GACAA intron-variant, nc-transcript-variant
rs1000149248 -- 218,367,349(+) TCTGT(C/T)TGGGT intron-variant
rs1000421726 -- 218,369,585(+) CCCAA(A/G)CGATC upstream-variant-2KB
rs1001794094 -- 218,368,305(+) TTGGA(C/T)TTGAA intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001869450 -- 218,366,429(+) CAAGA(A/G)GCTCC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CATIP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2763102 CNV loss 21179565
nsv519829 CNV loss 19592680

Relevant External Links for CATIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CATIP-AS1 Gene

Disorders for CATIP-AS1 Gene

Relevant External Links for CATIP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CATIP-AS1

No disorders were found for CATIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CATIP-AS1 Gene

Publications for CATIP-AS1 Gene

No publications were found for CATIP-AS1 Gene.

Products for CATIP-AS1 Gene

Sources for CATIP-AS1 Gene

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