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Aliases for CATIP-AS1 Gene

Subcategory (RNA class) for CATIP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CATIP-AS1 Gene

  • CATIP Antisense RNA 1 2 3 5

External Ids for CATIP-AS1 Gene

Previous GeneCards Identifiers for CATIP-AS1 Gene

  • GC02M219232

Summaries for CATIP-AS1 Gene

GeneCards Summary for CATIP-AS1 Gene

CATIP-AS1 (CATIP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CATIP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATIP-AS1 Gene

Genomics for CATIP-AS1 Gene

GeneHancer (GH) Regulatory Elements for CATIP-AS1 Gene

Promoters and enhancers for CATIP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I218366 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -2.0 -1973 6.8 HDGF SMAD1 ATF1 SIN3A YY1 ETS1 POLR2B ZNF207 ZNF143 ATF7 GC02M218358 CATIP-AS1 SLC11A1 ENSG00000261338 ARPC2 CXCR2 CXCR1 CATIP PNKD CNOT9
GH02I218393 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6 -33.1 -33105 14.4 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 CTDSP1 ENSG00000273361 MIR26B GC02P218403 CNOT9 AAMP USP37 STK36 ANKZF1 BCS1L
GH02I218281 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.6 +77.7 77664 17.9 MLX DMAP1 IRF4 YY1 ZNF143 SP3 NFYC MEF2D GLIS1 RCOR2 TMBIM1 ENSG00000261338 SLC11A1 ANKZF1 CTDSP1 MIR26B CNOT9 ARPC2 PNKD CATIP-AS1
GH02I218309 Enhancer 1.2 FANTOM5 Ensembl ENCODE 4.6 +56.2 56157 3.7 FOXA2 MLX ZFP64 RARA GTF3C2 POLR3A SCRT2 RCOR1 HMG20B RXRA ENSG00000261338 PNKD AAMP ZNF142 SLC11A1 CATIP-AS1 LOC105373880 LOC105373881 TMBIM1
GH02I218228 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.6 +137.7 137679 3.7 HDGF BATF IRF4 YY1 EGR1 ATF7 ETV6 IKZF2 BCLAF1 RUNX3 ENSG00000261338 GPBAR1 AAMP CXCR1 CATIP-AS1 GC02M218215 ARPC2 TRY-ATA1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CATIP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CATIP-AS1 Gene

Genomic Locations for CATIP-AS1 Gene
chr2:218,366,665-218,367,902
(GRCh38/hg38)
Size:
1,238 bases
Orientation:
Minus strand
chr2:219,231,388-219,232,558
(GRCh37/hg19)

Genomic View for CATIP-AS1 Gene

Genes around CATIP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CATIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATIP-AS1 Gene

Proteins for CATIP-AS1 Gene

Post-translational modifications for CATIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATIP-AS1 Gene

Domains & Families for CATIP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATIP-AS1 Gene

Function for CATIP-AS1 Gene

Phenotypes From GWAS Catalog for CATIP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATIP-AS1 Gene

Localization for CATIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CATIP-AS1 Gene

Pathways & Interactions for CATIP-AS1 Gene

SuperPathways for CATIP-AS1 Gene

No Data Available

Interacting Proteins for CATIP-AS1 Gene

Gene Ontology (GO) - Biological Process for CATIP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CATIP-AS1 Gene

Drugs & Compounds for CATIP-AS1 Gene

No Compound Related Data Available

Transcripts for CATIP-AS1 Gene

mRNA/cDNA for CATIP-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CATIP-AS1 Gene

No ASD Table

Relevant External Links for CATIP-AS1 Gene

GeneLoc Exon Structure for
CATIP-AS1
ECgene alternative splicing isoforms for
CATIP-AS1

Expression for CATIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CATIP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CATIP-AS1 Gene

This gene is overexpressed in Whole Blood (x14.6).
genes like me logo Genes that share expression patterns with CATIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATIP-AS1 Gene

Orthologs for CATIP-AS1 Gene

Evolution for CATIP-AS1 Gene

ENSEMBL:
Gene Tree for CATIP-AS1 (if available)
TreeFam:
Gene Tree for CATIP-AS1 (if available)

No data available for Orthologs for CATIP-AS1 Gene

Paralogs for CATIP-AS1 Gene

No data available for Paralogs for CATIP-AS1 Gene

Variants for CATIP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CATIP-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000097055 -- 218,366,957(-) A/G non_coding_transcript_variant
rs1000149248 -- 218,367,349(-) T/C intron_variant
rs1000421726 -- 218,369,585(-) G/A upstream_transcript_variant
rs1001794094 -- 218,368,305(-) C/T upstream_transcript_variant
rs1001869450 -- 218,366,429(-) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CATIP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2763102 CNV loss 21179565
nsv519829 CNV loss 19592680

Additional Variant Information for CATIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CATIP-AS1 Gene

Disorders for CATIP-AS1 Gene

Additional Disease Information for CATIP-AS1

No disorders were found for CATIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CATIP-AS1 Gene

Publications for CATIP-AS1 Gene

No publications were found for CATIP-AS1 Gene.

Products for CATIP-AS1 Gene

Sources for CATIP-AS1 Gene

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