CASZ1 Gene
protein-coding GIFtS : 45
GCID: GC01 M010642
castor zinc finger 1 (Previous names: castor homolog 1, zinc finger (Drosophila) )
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Aliasesfor CASZ1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Castor Zinc Finger 1 1 2 Castor Homolog 1, Zinc Finger (Drosophila)1 SRG1 2 3 5 Cst1 ZNF6931 2 3 CAS112 Castor-Related Protein2 3 Castor Homolog 1, Zinc Finger2 Zinc Finger Protein 6932 3 DJ734G22.11 CST2 3 Survival-Related1 FLJ203211 Zinc Finger Protein Castor Homolog 12 Castor1 Putative Survival-Related Protein3
Export aliases for CASZ1 gene to outside databases Previous GC identifer: GC01M009850
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Summariesfor CASZ1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CASZ1 : The protein encoded by this gene is a zinc finger transcription factor. The encoded protein may function as a tumor suppressor, and single nucleotide polymorphisms in this gene are associated with blood pressure variation. Alternative splicing results in multiple transcript variants that encode different protein isoforms. (provided by RefSeq, Jul 2012) UniProtKB/Swiss-Prot: CASZ1_HUMAN, Q86V15 Function : Probable transcription factor (By similarity)Gene Wiki entry for CASZ1
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Genomic Viewsfor CASZ1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_021937.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CASZ1 gene promoter: FOXD3 Nkx2-5 POU3F2 NF-AT AREB6 NF-AT4 SRY NF-AT2 NF-AT3 NF-AT1 Other transcription factors Search SABiosciences Chromatin IP Primers for CASZ1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CASZ1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p36.22 Ensembl cytogenetic band: 1p36.22 HGNC cytogenetic band: 1p36.22 CASZ1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M010642: view genomic region
(about GC identifiers )
Start:
10,696,661 bp from pter
End:
10,856,707 bp from pter
Size:
160,047 bases
Orientation:
minus strand
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Proteinsfor CASZ1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CASZ1_HUMAN, Q86V15 (See
protein sequence )Recommended Name: Zinc finger protein castor homolog 1 Size : 1759 amino acids; 190069 Da
Subcellular location : Nucleus
Caution : According to PubMed:16322216, another protein (SRG) is encoded on the 3'-UTR of the CASZ1 gene. The existenceof this protein that may play a role in apoptosis is extremely dubious despite the fact it was localized in the cytoplasm with the help of a polyclonal antibody
Sequence caution : Sequence=ABD14411.1; Type=Erroneous translation; Note=Wrong choice of CDS; Sequence=BAA91089.1;Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC85474.1; Type=Erroneous translation; Note=Wrong choice of CDS;
Secondary accessions : Q078S9 Q2EN02 Q5T9S1 Q6ZNM8 Q8WX49 Q8WX50 Q9BT16 Q9NXC6Alternative splicing : 2 isoforms : Q86V15-1 Q86V15-2 Explore the universe of human proteins at neXtProt for CASZ1: NX_Q86V15 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q86V15 CASZ1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001073312.1 NP_060236.3 ENSEMBL proteins: ENSP00000366221 ENSP00000467769 ENSP00000339445 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
CASZ1 for ontologies About GeneDecksing CASZ1 Antibody Products: Assay Products for CASZ1:
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Protein
Domains / Familiesfor CASZ1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CASZ1 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q86V15 ProtoNet protein and cluster: Q86V15
UniProtKB/Swiss-Prot: CASZ1_HUMAN, Q86V15 Similarity : Contains 8 C2H2-type zinc fingers
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Functionfor CASZ1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CASZ1_HUMAN, Q86V15 Function : Probable transcription factor (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CASZ1 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CASZ1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): CASZ1 (NM_017766 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CASZ1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CASZ1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CASZ1
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
CASZ1 for ontologies About GeneDecksing
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Pathways & Interactionsfor CASZ1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CASZ1 Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA --
CASZ1 for ontologies About GeneDecksing
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Drugs & Compoundsfor CASZ1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CASZ1 Search CenterWatch for drugs/clinical trials and news about CASZ1
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Transcriptsfor CASZ1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CASZ1 gene (3 alternative transcripts): NM_001079843.2 NM_017766.4 NM_001039183.2 Unigene Cluster for CASZ1:
Castor zinc finger 1 Hs.439894 [show with all ESTs ] Unigene Representative Sequence: NM_001079843 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000377022 (uc001aro.3 ) ENST00000478524 ENST00000447850 ENST00000344008 (uc001arp.1 )ENST00000490176 ENST00000496432 (uc009vmx.2 ) ENST00000492173 (uc001arq.1 )ENST00000478728 ENST00000472814 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CASZ1 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CASZ1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): CASZ1 (NM_017766 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CASZ1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CASZ1
Additional cDNA sequence: AK000328.1 AK092289.1 AK130996.1 AK225324.1 AK293839.1 AK311700.1 BC004410.1 BC051883.2 DQ217660.1 DQ372703.1
9 DOTS entries : DT.306457 DT.40218363
DT.428007 DT.97822597 DT.99926552 DT.121333867 DT.97775768 DT.100806496 DT.91638235 24/64 AceView cDNA sequences (see all 64 ):
BQ073749 AW129465 AI935220 AI025065 BC004410 AI446176 AA410866 AW516662 AI671758 BE676352 AW079610 BC051883 BM800348 BM978297 NM_017766 BM795595 BE466522 AK000328 BQ446531 BQ423979 BM048706 BQ188241 BQ188091 AK092289 GeneLoc Exon Structure
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Expression for CASZ1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CASZ1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ACTGATGCAA
About this image CASZ1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CASZ1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CASZ1 SOURCE GeneReport for Unigene cluster: Hs.439894 UniProtKB/Swiss-Prot: CASZ1_HUMAN, Q86V15 Tissue specificity : Expressed in heart, lung, skeletal muscle, pancreas, testis, small intestine, and stomach, but itis not detectable in the adult brain SABiosciences Custom PCR Arrays for CASZ1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CASZ1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CASZ1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CASZ1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CASZ1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CASZ1
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Orthologsfor CASZ1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for CASZ1 gene from 5/15 species (see all 15 ) About this table
ENSEMBL Gene Tree for CASZ1 (if available)TreeFam Gene Tree for CASZ1 (if available)
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Paralogsfor CASZ1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CASZ1 gene
CASZ1 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for CASZ1 PGOHUM00000247091
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Genomic Variantsfor CASZ1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CASZ1 (10696661 - 10856707 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 10 variations for CASZ1 7 CNVs : 3282 30368 4205 1314 53188 9872 1536 3 Indels : 84047 74331 84046
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CASZ1
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Disorders
/ Diseasesfor CASZ1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CASZ1 for disorders About GeneDecksing
OMIM gene information: 609895
OMIM disorders : --6 diseases for CASZ1 : About MalaCards childhood leukemia lymphoblastic leukemia migraine leukemia hypertension neuroblastoma Human Genome Epidemiology (HuGE) Navigator: CASZ1 (4 documents) Export disorders for CASZ1 gene to outside databases
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Publicationsfor CASZ1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CASZ1 gene, integrated from 9 sources (see all 22 ): (articles sorted by number of sources associating them with CASZ1) Utopia : connect your pdf to the dynamic world of online information
Molecular cloning and characterization of human Castor, a novel human gene upregulated during cell differentiation. (PubMed id 16631614) 1 , 2 , 3 Liu Z.... Thiele C.J. (2006) CASZ1, a candidate tumor-suppressor gene, suppresses neuroblastoma tumor growth through reprogramming gene expression. (PubMed id 21252912) 1 , 3 Liu Z....Thiele C.J. (2011) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) Identification and characterization of survival-related gene, a novel cell survival gene controlling apoptosis and tumorigenesis. (PubMed id 16322216) 1 , 2 Yuan Z.-R.... Shi Y. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Loss of gene function as a consequence of human papill omavirus DNA integration. (PubMed id 22262398) 1 Schmitz M....Durst M. (2012) Characterization of critical domains within the tumor suppressor CASZ1 required for transcriptional regulation and growth suppression. (PubMed id 22331471) 1 Virden R.A....Liu Z. (2012) EZH2 Mediates epigenetic silencing of neuroblastoma su ppressor genes CASZ1, CLU, RUNX3, and NGFR. (PubMed id 22068036) 1 Wang C....Thiele C.J. (2012) CASZ1b, the short isoform of CASZ1 gene, coexpresses with CASZ1a during neurogenesis and suppresses neuroblastoma cell growth. (PubMed id 21490919) 1 Liu Z....Thiele C.J. (2011)
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External Searches for CASZ1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CASZ1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CASZ1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CASZ1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CASZ1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CASZ1 gene: Search GeneIP for patents involving CASZ1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CASZ1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CASZ1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CASZ1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CASZ1 OriGene Protein Over-expression Lysate for CASZ1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CASZ1 OriGene 3'-UTR Clone for CASZ1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CASZ1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CASZ1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CASZ1 OriGene Custom Protein Services for CASZ1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CASZ1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CASZ1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CASZ1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CASZ1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CASZ1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CASZ1
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CASZ1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CASZ1
ThermoFisher Antibodies for CASZ1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CASZ1
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Aliases for CASZ1
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Disorders / Diseases for CASZ1
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Expression for CASZ1
Function for CASZ1
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