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Aliases for CASTOR2 Gene

Aliases for CASTOR2 Gene

  • Cytosolic Arginine Sensor For MTORC1 Subunit 2 2 3
  • GATS Protein Like 2 2 3 5
  • GATSL2 3 4 5
  • Cytosolic Arginine Sensor For MTORC1 Subunit 1 2 3
  • Cellular Arginine Sensor For MTORC1 Protein 2 3 4
  • GATS Protein-Like 1 2 3
  • GATSL1 3 4
  • GATS-Like Protein 1 3
  • GATS-Like Protein 2 3

External Ids for CASTOR2 Gene

Previous HGNC Symbols for CASTOR2 Gene

  • GATSL1
  • GATSL2

Summaries for CASTOR2 Gene

GeneCards Summary for CASTOR2 Gene

CASTOR2 (Cytosolic Arginine Sensor For MTORC1 Subunit 2) is a Protein Coding gene. An important paralog of this gene is CASTOR1.

UniProtKB/Swiss-Prot for CASTOR2 Gene

  • Functions as a negative regulator of the TORC1 signaling pathway through the GATOR complex. As part of homodimers or heterodimers with GATSL3, directly binds and inhibits the GATOR subcomplex GATOR2 and thereby mTORC1. Does not directly bind arginine, but binding of arginine to GATSL3 disrupts the interaction of GATSL2-containing heterodimers with GATOR2 which can in turn activate mTORC1 and the TORC1 signaling pathway.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASTOR2 Gene

Genomics for CASTOR2 Gene

Regulatory Elements for CASTOR2 Gene

Enhancers for CASTOR2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G074997 0.6 Ensembl 0.3 +33.3 33283 0.6 FOSL1 SMARCE1 ARID1B SMARCA4 ADNP IKZF1 NFE2 DPF2 PIR40795 GC07P075020 GC07P075019 GC07P075018 CASTOR2
GH07G074993 0.6 Ensembl 0.3 +29.6 29583 2.0 ZNF146 NFIB ZNF223 ZBTB8A ZNF398 ZNF7 GLIS1 ZNF580 FOS SP7 STAG3L2 GTF2IP1 PIR40795 GC07P075020 GC07P075019 GC07P075018 CASTOR2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASTOR2 on UCSC Golden Path with GeneCards custom track

Promoters for CASTOR2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000326774 282 1801 PKNOX1 RB1 ZSCAN4 ARID4B ZNF76 SIN3A FEZF1 RAD21 EGR1 ZNF366
ENSR00000213702 1482 201 CTCF CEBPB HNF4A RAD21

Genomic Location for CASTOR2 Gene

Chromosome:
7
Start:
74,964,818 bp from pter
End:
75,031,532 bp from pter
Size:
66,715 bases
Orientation:
Plus strand

Genomic View for CASTOR2 Gene

Genes around CASTOR2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASTOR2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASTOR2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASTOR2 Gene

Proteins for CASTOR2 Gene

  • Protein details for CASTOR2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NHX0-GATL2_HUMAN
    Recommended name:
    GATS-like protein 2
    Protein Accession:
    A6NHX0
    Secondary Accessions:
    • A6NNH0
    • B9EJH9

    Protein attributes for CASTOR2 Gene

    Size:
    329 amino acids
    Molecular mass:
    36056 Da
    Quaternary structure:
    • Forms homodimers and heterodimers with GATSL3 (PubMed:26972053). Interacts with the GATOR2 complex which is composed of MIOS, SEC13, SEH1L, WDR24 and WDR59; the interaction is not regulated by arginine (PubMed:26972053).

neXtProt entry for CASTOR2 Gene

Post-translational modifications for CASTOR2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CASTOR2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CASTOR2 Gene

Domains & Families for CASTOR2 Gene

Protein Domains for CASTOR2 Gene

Suggested Antigen Peptide Sequences for CASTOR2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NHX0

UniProtKB/Swiss-Prot:

GATL2_HUMAN :
  • Belongs to the GATS family.
Family:
  • Belongs to the GATS family.
genes like me logo Genes that share domains with CASTOR2: view

No data available for Gene Families for CASTOR2 Gene

Function for CASTOR2 Gene

Molecular function for CASTOR2 Gene

UniProtKB/Swiss-Prot Function:
Functions as a negative regulator of the TORC1 signaling pathway through the GATOR complex. As part of homodimers or heterodimers with GATSL3, directly binds and inhibits the GATOR subcomplex GATOR2 and thereby mTORC1. Does not directly bind arginine, but binding of arginine to GATSL3 disrupts the interaction of GATSL2-containing heterodimers with GATOR2 which can in turn activate mTORC1 and the TORC1 signaling pathway.

Gene Ontology (GO) - Molecular Function for CASTOR2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 26972053
GO:0034618 NOT arginine binding IDA 26972053
GO:0042802 identical protein binding IDA 26972053
genes like me logo Genes that share ontologies with CASTOR2: view

Phenotypes for CASTOR2 Gene

GenomeRNAi human phenotypes for CASTOR2:
genes like me logo Genes that share phenotypes with CASTOR2: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CASTOR2 Gene

Localization for CASTOR2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CASTOR2 Gene

Cytoplasm, cytosol.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CASTOR2 gene
Compartment Confidence
cytosol 5

Gene Ontology (GO) - Cellular Components for CASTOR2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol IEA,IDA 26972053
GO:0061700 colocalizes_with GATOR2 complex IDA 26972053
genes like me logo Genes that share ontologies with CASTOR2: view

Pathways & Interactions for CASTOR2 Gene

SuperPathways for CASTOR2 Gene

No Data Available

Interacting Proteins for CASTOR2 Gene

Selected Interacting proteins: A6NHX0-GATL2_HUMAN for CASTOR2 Gene via IID

Symbol External ID(s) Details
CASTOR1

Gene Ontology (GO) - Biological Process for CASTOR2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1904262 negative regulation of TORC1 signaling IMP 26972053
genes like me logo Genes that share ontologies with CASTOR2: view

No data available for Pathways by source and SIGNOR curated interactions for CASTOR2 Gene

Transcripts for CASTOR2 Gene

mRNA/cDNA for CASTOR2 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CASTOR2 Gene

No ASD Table

Relevant External Links for CASTOR2 Gene

GeneLoc Exon Structure for
CASTOR2
ECgene alternative splicing isoforms for
CASTOR2

Expression for CASTOR2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of CASTOR2 Gene:

CASTOR2

mRNA Expression by UniProt/SwissProt for CASTOR2 Gene:

A6NHX0-GATL2_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expression patterns with CASTOR2: view

Primer Products

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASTOR2 Gene

Orthologs for CASTOR2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CASTOR2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GATSL2 34
  • 99.9 (n)
cow
(Bos Taurus)
Mammalia GATSL2 34
  • 91.69 (n)
mouse
(Mus musculus)
Mammalia Gatsl2 16 34
  • 88.86 (n)
dog
(Canis familiaris)
Mammalia GATSL2 34
  • 88.78 (n)
rat
(Rattus norvegicus)
Mammalia Gatsl2 34
  • 87.84 (n)
chicken
(Gallus gallus)
Aves GATSL2 34
  • 81.07 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia gatsl1 34
  • 79.23 (n)
zebrafish
(Danio rerio)
Actinopterygii gatsl2 34
  • 75.36 (n)
Species where no ortholog for CASTOR2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CASTOR2 Gene

ENSEMBL:
Gene Tree for CASTOR2 (if available)
TreeFam:
Gene Tree for CASTOR2 (if available)

Paralogs for CASTOR2 Gene

Paralogs for CASTOR2 Gene

genes like me logo Genes that share paralogs with CASTOR2: view

Variants for CASTOR2 Gene

Sequence variations from dbSNP and Humsavar for CASTOR2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000195451 -- 75,020,905(+) GATCC(A/G)CATGT intron-variant
rs1000303158 -- 75,026,008(+) TAGTT(C/G)TATCT intron-variant, utr-variant-3-prime
rs1000374940 -- 75,026,343(+) CACCA(C/T)CACGT intron-variant, utr-variant-3-prime
rs1000609984 -- 75,020,740(+) CGCCC(C/T)GGCCT intron-variant
rs1000639066 -- 75,025,007(+) TCATC(C/T)GGCCT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CASTOR2 Gene

Variant ID Type Subtype PubMed ID
dgv11452n54 CNV loss 21841781
dgv3593n106 CNV deletion 24896259
esv1398337 CNV insertion 17803354
esv2658348 CNV deletion 23128226
nsv1032137 CNV gain 25217958
nsv1075033 CNV deletion 25765185
nsv1075972 CNV deletion 25765185
nsv1112935 CNV deletion 24896259
nsv1119128 CNV deletion 24896259
nsv1145144 CNV deletion 24896259
nsv7402 OTHER inversion 18451855
nsv8145 CNV gain 18304495
nsv950552 CNV deletion 24416366
nsv951355 CNV deletion 24416366
nsv970534 CNV duplication 23825009
nsv970537 CNV duplication 23825009
nsv970882 CNV duplication 23825009
nsv981529 CNV duplication 23825009
nsv981530 CNV duplication 23825009
nsv981533 CNV duplication 23825009
nsv981668 CNV duplication 23825009

Variation tolerance for CASTOR2 Gene

Gene Damage Index Score: 0.20; 4.51% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CASTOR2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASTOR2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CASTOR2 Gene

Disorders for CASTOR2 Gene

Relevant External Links for CASTOR2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASTOR2

No disorders were found for CASTOR2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASTOR2 Gene

Publications for CASTOR2 Gene

  1. The CASTOR proteins are arginine sensors for the mTORC1 pathway. (PMID: 26972053) Chantranupong L. … Sabatini D.M. (Cell 2016) 2 3 4 64
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for CASTOR2 Gene

Sources for CASTOR2 Gene

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