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Aliases for CASS4 Gene

Aliases for CASS4 Gene

  • Cas Scaffolding Protein Family Member 4 2 3
  • HEF-Like Protein 2 3 4
  • HEF1-EFS-P130Cas-Like Protein 3 4
  • C20orf32 3 4
  • HEFL 3 4
  • HEPL 3 4
  • Chromosome 20 Open Reading Frame 32 2
  • HEF1-Efs-P130Cas-Like 2
  • CAS4 3

External Ids for CASS4 Gene

Previous HGNC Symbols for CASS4 Gene

  • C20orf32

Previous GeneCards Identifiers for CASS4 Gene

  • GC20P054421
  • GC20P054987
  • GC20P051772

Summaries for CASS4 Gene

GeneCards Summary for CASS4 Gene

CASS4 (Cas Scaffolding Protein Family Member 4) is a Protein Coding gene. GO annotations related to this gene include phosphorelay sensor kinase activity. An important paralog of this gene is NEDD9.

UniProtKB/Swiss-Prot for CASS4 Gene

  • Docking protein that plays a role in tyrosine kinase-based signaling related to cell adhesion and cell spreading. Regulates PTK2/FAK1 activity, focal adhesion integrity, and cell spreading.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASS4 Gene

Genomics for CASS4 Gene

Regulatory Elements for CASS4 Gene

Genomic Location for CASS4 Gene

Start:
56,411,555 bp from pter
End:
56,460,387 bp from pter
Size:
48,833 bases
Orientation:
Plus strand

Genomic View for CASS4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CASS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASS4 Gene

Proteins for CASS4 Gene

  • Protein details for CASS4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NQ75-CASS4_HUMAN
    Recommended name:
    Cas scaffolding protein family member 4
    Protein Accession:
    Q9NQ75
    Secondary Accessions:
    • E1P5Z8
    • Q5QPD6
    • Q96K09
    • Q9BYL5

    Protein attributes for CASS4 Gene

    Size:
    786 amino acids
    Molecular mass:
    87144 Da
    Quaternary structure:
    • Interacts (via SH3 domain) with PTK2/FAK1 (via C-terminus).
    SequenceCaution:
    • Sequence=CAC00655.1; Type=Frameshift; Positions=336, 342; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for CASS4 Gene

    Alternative splice isoforms for CASS4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CASS4 Gene

Proteomics data for CASS4 Gene at MOPED

Post-translational modifications for CASS4 Gene

Other Protein References for CASS4 Gene

No data available for DME Specific Peptides for CASS4 Gene

Domains for CASS4 Gene

Gene Families for CASS4 Gene

HGNC:
  • CASS :Cas scaffolding proteins

Protein Domains for CASS4 Gene

Suggested Antigen Peptide Sequences for CASS4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NQ75

UniProtKB/Swiss-Prot:

CASS4_HUMAN :
  • Q9NQ75
Domain:
  • Contains 1 SH3 domain.
Family:
  • Belongs to the CAS family.
genes like me logo Genes that share domains with CASS4: view

Function for CASS4 Gene

Molecular function for CASS4 Gene

UniProtKB/Swiss-Prot Function: Docking protein that plays a role in tyrosine kinase-based signaling related to cell adhesion and cell spreading. Regulates PTK2/FAK1 activity, focal adhesion integrity, and cell spreading.

Gene Ontology (GO) - Molecular Function for CASS4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000155 phosphorelay sensor kinase activity IEA --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CASS4: view

Phenotypes for CASS4 Gene

GenomeRNAi human phenotypes for CASS4:
genes like me logo Genes that share phenotypes with CASS4: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CASS4 Gene

Localization for CASS4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CASS4 Gene

Cytoplasm, cytoskeleton. Cell junction, focal adhesion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CASS4 Gene COMPARTMENTS Subcellular localization image for CASS4 gene
Compartment Confidence
cytoskeleton 5
cytosol 3
nucleus 2

Gene Ontology (GO) - Cellular Components for CASS4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005925 focal adhesion IEA --
GO:0016020 membrane IEA --
GO:0030054 cell junction --
genes like me logo Genes that share ontologies with CASS4: view

Pathways for CASS4 Gene

SuperPathways for CASS4 Gene

No Data Available

Interacting Proteins for CASS4 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000353462%0d%0a9606.ENSP00000427562%0d%0a9606.ENSP00000300574%0d%0a
Selected Interacting proteins: ENSP00000353462 Q9NQ75-CASS4_HUMAN for CASS4 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for CASS4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000160 phosphorelay signal transduction system IEA --
GO:0007155 cell adhesion IEA --
GO:0023014 signal transduction by protein phosphorylation IEA --
genes like me logo Genes that share ontologies with CASS4: view

No data available for Pathways by source for CASS4 Gene

Transcripts for CASS4 Gene

mRNA/cDNA for CASS4 Gene

(6) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(5) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CASS4 Gene

Cas scaffolding protein family member 4:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CASS4

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CASS4
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CASS4 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b
SP1: - - - - -
SP2: - - - - -
SP3: - -
SP4: - - -
SP5:
SP6:

Relevant External Links for CASS4 Gene

GeneLoc Exon Structure for
CASS4
ECgene alternative splicing isoforms for
CASS4

Expression for CASS4 Gene

mRNA expression in normal human tissues for CASS4 Gene

mRNA differential expression in normal tissues according to GTEx for CASS4 Gene

This gene is overexpressed in Lung (10.9) and Whole Blood (10.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CASS4 Gene

SOURCE GeneReport for Unigene cluster for CASS4 Gene Hs.473144

mRNA Expression by UniProt/SwissProt for CASS4 Gene

Q9NQ75-CASS4_HUMAN
Tissue specificity: Expressed abundantly in lung and spleen. Also highly expressed in ovarian and leukemia cell lines.
genes like me logo Genes that share expressions with CASS4: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for CASS4 Gene

Orthologs for CASS4 Gene

This gene was present in the common ancestor of animals.

Orthologs for CASS4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CASS4 35
  • 98.98 (n)
  • 98.35 (a)
CASS4 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CASS4 35
  • 80.33 (n)
  • 72.29 (a)
CASS4 36
  • 66 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CASS4 35
  • 79.81 (n)
  • 72.95 (a)
CASS4 36
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cass4 35
  • 74.47 (n)
  • 66.93 (a)
Cass4 16
Cass4 36
  • 63 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CASS4 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CASS4 36
  • 51 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cass4 35
  • 73.31 (n)
  • 67.37 (a)
chicken
(Gallus gallus)
Aves CASS4 35
  • 58.13 (n)
  • 47.19 (a)
CASS4 36
  • 42 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CASS4 36
  • 34 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cass4 35
  • 53.92 (n)
  • 42.36 (a)
zebrafish
(Danio rerio)
Actinopterygii CASS4 36
  • 30 (a)
OneToOne
LOC100000938 35
  • 49.52 (n)
  • 39.52 (a)
fruit fly
(Drosophila melanogaster)
Insecta p130CAS 36
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6681 36
  • 20 (a)
OneToMany
Species with no ortholog for CASS4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CASS4 Gene

ENSEMBL:
Gene Tree for CASS4 (if available)
TreeFam:
Gene Tree for CASS4 (if available)

Paralogs for CASS4 Gene

Paralogs for CASS4 Gene

Selected SIMAP similar genes for CASS4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CASS4: view

Variants for CASS4 Gene

Sequence variations from dbSNP and Humsavar for CASS4 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs376900 -- 56,451,479(+) ATAGG(A/G)GTTTG intron-variant
rs386274 -- 56,455,025(+) GACTC(A/C)GTTCC intron-variant
rs401897 -- 56,454,702(+) TGGAA(C/T)AAAGG intron-variant
rs442481 -- 56,451,476(+) TGCAT(A/G)GGGGT intron-variant
rs718022 -- 56,428,409(+) ATTGG(A/G)CAGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASS4 Gene

Variant ID Type Subtype PubMed ID
nsv834013 CNV Gain 17160897
nsv525425 CNV Gain 19592680
nsv518442 CNV Gain 19592680
dgv249n21 CNV Loss 19592680
nsv525175 CNV Loss 19592680
esv2675000 CNV Deletion 23128226
esv29379 CNV Loss 19812545
esv267778 CNV Insertion 20981092

Relevant External Links for CASS4 Gene

HapMap Linkage Disequilibrium report
CASS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CASS4 Gene

Disorders for CASS4 Gene

Relevant External Links for CASS4

Genetic Association Database (GAD)
CASS4
genes like me logo Genes that share disorders with CASS4: view

No data available for UniProtKB/Swiss-Prot for CASS4 Gene

Publications for CASS4 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A novel Cas family member, HEPL, regulates FAK and cell spreading. (PMID: 18256281) Singh M.K. … Golemis E.A. (Mol. Biol. Cell 2008) 3 4
  5. Charting the molecular network of the drug target Bcr-Abl. (PMID: 19380743) Brehme M. … Superti-Furga G. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3

Products for CASS4 Gene

Sources for CASS4 Gene

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