Aliases for CASS4 Gene
Aliases for CASS4 Gene
External Ids for CASS4 Gene
- HGNC: 15878
- Entrez Gene: 57091
- Ensembl: ENSG00000087589
- UniProtKB: Q9NQ75
Previous HGNC Symbols for CASS4 Gene
- C20orf32
Previous GeneCards Identifiers for CASS4 Gene
- GC20P054421
- GC20P054987
- GC20P051772
Summaries for CASS4 Gene
GeneCards Summary for CASS4 Gene
CASS4 (Cas Scaffolding Protein Family Member 4) is a Protein Coding gene. GO annotations related to this gene include phosphorelay sensor kinase activity. An important paralog of this gene is NEDD9.
UniProtKB/Swiss-Prot for CASS4 Gene
-
Docking protein that plays a role in tyrosine kinase-based signaling related to cell adhesion and cell spreading. Regulates PTK2/FAK1 activity, focal adhesion integrity, and cell spreading.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASS4 Gene
Genomics for CASS4 Gene
Regulatory Elements for CASS4 Gene
Regulatory Element Products
Genomic Location for CASS4 Gene
- Chromosome:
- 20
- Start:
- 56,411,548 bp from pter
- End:
- 56,460,387 bp from pter
- Size:
- 48,840 bases
- Orientation:
- Plus strand
Genomic View for CASS4 Gene
- Cytogenetic band:
-
- 20q13.31 by Ensembl
- 20q13.31 by Entrez Gene
- 20q13.31 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CASS4 Gene
Proteins for CASS4 Gene
-
Protein details for CASS4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NQ75-CASS4_HUMAN
- Recommended name:
- Cas scaffolding protein family member 4
- Protein Accession:
- Q9NQ75
- E1P5Z8
- Q5QPD6
- Q96K09
- Q9BYL5
Protein attributes for CASS4 Gene
- Size:
- 786 amino acids
- Molecular mass:
- 87144 Da
- Quaternary structure:
-
- Interacts (via SH3 domain) with PTK2/FAK1 (via C-terminus).
- SequenceCaution:
-
- Sequence=CAC00655.1; Type=Frameshift; Positions=336, 342; Evidence={ECO:0000305};
Protein Expression for CASS4 Gene
Post-translational modifications for CASS4 Gene
- Phosphorylated on tyrosines by SRC.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for CASS4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for CASS4
- Invitrogen Antibodies for CASS4
- antibodies-online Antibodies for CASS4: See all 21
- Search GeneTex for Antibodies for CASS4
-
Santa Cruz Biotechnology (SCBT) Antibodies for CASS4
Protein Products
-
OriGene Purified Proteins for CASS4
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- antibodies-online Proteins for CASS4: See all 3
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- Search GeneTex for Proteins for CASS4
Assay Products
- antibodies-online Kits for CASS4: See all 4
No data available for DME Specific Peptides for CASS4 Gene
Domains & Families for CASS4 Gene
Gene Families for CASS4 Gene
Protein Domains for CASS4 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for CASS4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9NQ75- Family:
-
- Belongs to the CAS family.
Function for CASS4 Gene
Molecular function for CASS4 Gene
- UniProtKB/Swiss-Prot Function:
- Docking protein that plays a role in tyrosine kinase-based signaling related to cell adhesion and cell spreading. Regulates PTK2/FAK1 activity, focal adhesion integrity, and cell spreading.
Phenotypes for CASS4 Gene
- GenomeRNAi human phenotypes for CASS4:
Animal Model Products
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-
-
ViGene Biosciences lentiviral particle packaged cDNA for CASS4 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CASS4 gene
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CRISPR Products
-
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-
Santa Cruz Biotechnology (SCBT) CRISPR for CASS4
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miRNA for CASS4 Gene
- miRTarBase miRNAs that target CASS4
-
- hsa-mir-218-5p (MIRT449642)
- hsa-mir-1273e (MIRT449643)
- hsa-mir-4727-5p (MIRT449644)
- hsa-mir-6867-5p (MIRT449645)
- hsa-mir-636 (MIRT449646)
- hsa-mir-3650 (MIRT449647)
- hsa-mir-4522 (MIRT449648)
- hsa-mir-4769-3p (MIRT449649)
- hsa-mir-6817-5p (MIRT449650)
- hsa-mir-4289 (MIRT449651)
- hsa-mir-6818-5p (MIRT619037)
- hsa-mir-7703 (MIRT619038)
- hsa-mir-6720-5p (MIRT619039)
- hsa-mir-6512-3p (MIRT619040)
- hsa-mir-542-3p (MIRT619041)
- hsa-mir-4504 (MIRT619042)
- hsa-mir-6811-3p (MIRT619043)
- hsa-mir-4252 (MIRT619044)
- hsa-mir-4793-3p (MIRT619045)
- hsa-mir-766-3p (MIRT619046)
- hsa-mir-1292-3p (MIRT619047)
- hsa-mir-6849-3p (MIRT619048)
- hsa-mir-1273g-3p (MIRT619049)
- hsa-mir-508-5p (MIRT619050)
miRNA Products
- Search ViGene Biosciences for CASS4
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CASS4
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-
ViGene Biosciences ready-to-package AAV shRNAs for CASS4 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CASS4
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASS4
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for CASS4
-
ViGene Biosciences adenoviral particle packaged cDNA for CASS4 gene
-
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-
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CASS4 Gene
Localization for CASS4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CASS4 Gene
- Cytoplasm, cytoskeleton. Cell junction, focal adhesion.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005856 | cytoskeleton | IEA | -- |
| GO:0005925 | focal adhesion | IEA | -- |
| GO:0030054 | cell junction | IEA | -- |
Pathways & Interactions for CASS4 Gene
Interacting Proteins for CASS4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0007155 | cell adhesion | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for CASS4 Gene
Transcripts for CASS4 Gene
mRNA/cDNA for CASS4 Gene
- (5) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (7) Selected AceView cDNA sequences:
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CASS4 Gene
- Cas scaffolding protein family member 4:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for CASS4
-
Santa Cruz Biotechnology (SCBT) CRISPR for CASS4
- GenScript: Design CRISPR guide RNA sequences for CASS4
miRNA Products
- Search ViGene Biosciences for CASS4
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CASS4
- Browse OriGene Inhibitory RNA Products For CASS4
-
ViGene Biosciences ready-to-package AAV shRNAs for CASS4 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CASS4
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASS4
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | · | 9c | ^ | 10a | · | 10b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | ||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | ||||||||||||||||||||||||||||
| SP3: | - | - | |||||||||||||||||||||||||||||||
| SP4: | - | - | - | ||||||||||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||||||||||
| SP6: |
Expression for CASS4 Gene
mRNA differential expression in normal tissues according to GTEx for CASS4 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CASS4 Gene
NURSA nuclear receptor signaling pathways regulating expression of CASS4 Gene:
CASS4SOURCE GeneReport for Unigene cluster for CASS4 Gene:
Hs.473144mRNA Expression by UniProt/SwissProt for CASS4 Gene:
Q9NQ75-CASS4_HUMANEvidence on tissue expression from TISSUES for CASS4 Gene
- Blood(4.5)
Primer Products
-
OriGene qPCR primer pairs for CASS4
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASS4 Gene
Orthologs for CASS4 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CASS4 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | CASS4 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | CASS4 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Cass4 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Cass4 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | CASS4 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | CASS4 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | CASS4 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | CASS4 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | cass4 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC100000938 34 |
|
||
| CASS4 35 |
|
OneToOne | |||
| fruit fly (Drosophila melanogaster) |
Insecta | p130CAS 35 |
|
OneToMany | |
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.6681 35 |
|
OneToMany |
- Species where no ortholog for CASS4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for CASS4 Gene
Variants for CASS4 Gene
| SNP ID | Clin | Chr 20 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000016814 | -- | 56,416,727(+) | AATTT(C/G)TGATA | intron-variant | |
| rs1000057196 | -- | 56,446,883(+) | AGCAG(G/T)CTCTG | intron-variant | |
| rs1000132329 | -- | 56,445,686(+) | ACATC(A/G)TGGGC | intron-variant | |
| rs1000150688 | -- | 56,440,759(+) | CATCA(A/G)CCATT | intron-variant | |
| rs1000199055 | -- | 56,423,122(+) | TTAGA(A/C)CCAGA | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv249n21 | CNV | loss | 19592680 |
| dgv787e214 | CNV | gain | 21293372 |
| esv2675000 | CNV | deletion | 23128226 |
| esv29379 | CNV | loss | 19812545 |
| esv3303499 | CNV | mobile element insertion | 20981092 |
| esv3368469 | CNV | insertion | 20981092 |
| esv3646189 | CNV | loss | 21293372 |
| esv3646191 | CNV | loss | 21293372 |
| esv3646192 | CNV | loss | 21293372 |
| nsv518442 | CNV | gain | 19592680 |
| nsv525175 | CNV | loss | 19592680 |
| nsv525425 | CNV | gain | 19592680 |
| nsv834013 | CNV | gain | 17160897 |
| nsv964412 | CNV | duplication | 23825009 |
Relevant External Links for CASS4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CASS4
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CASS4 Gene
Disorders for CASS4 Gene
Relevant External Links for CASS4
No disorders were found for CASS4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASS4 Gene
Publications for CASS4 Gene
- Embryonal Fyn-associated substrate (EFS) and CASS4: The lesser-known CAS protein family members. (PMID: 26119091) Deneka A. … Golemis E.A. (Gene 2015) 2 3 64
- CAS proteins in health and disease: an update. (PMID: 24962474) Nikonova A.S. … Golemis E.A. (IUBMB Life 2014) 2 3 64
- A novel Cas family member, HEPL, regulates FAK and cell spreading. (PMID: 18256281) Singh M.K. … Golemis E.A. (Mol. Biol. Cell 2008) 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
Products for CASS4 Gene
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- Custom Antibody ServicesOriGene Antibodies for CASS4
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- OriGene qPCR primer pairs for CASS4
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- GenScript: Design CRISPR guide RNA sequences for CASS4
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- Novus Biologicals proteins and lysates for CASS4
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- antibodies-online Antibodies for CASS4: See all 21
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- antibodies-online Proteins for CASS4: See all 3
- Search antibodies-online for peptides
- Search GeneTex for Antibodies for CASS4
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- ViGene Biosciences adenoviral particle packaged cDNA for CASS4 gene
- ViGene Biosciences lentiviral particle packaged cDNA for CASS4 gene
- ViGene Biosciences ready-to-package AAV shRNAs for CASS4 gene
- Search ViGene Biosciences for CASS4
- Santa Cruz Biotechnology (SCBT) Antibodies for CASS4
- Search Santa Cruz Biotechnology (SCBT) for CASS4 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for CASS4
- Horizon Cell Lines for CASS4
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASS4
- VectorBuilder custom plasmid, inducible vectors for CASS4
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASS4
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CASS4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
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- (122) diseasecard
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- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer




