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CASP16 Gene

protein-coding   GIFtS: 27
GCID: GC16P003198          (predicted)

Caspase 16, Apoptosis-Related Cysteine Peptidase (Putative)

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Caspase 16, Apoptosis-Related Cysteine Peptidase (Putative)1 2
CASP14L2 3
Putative Caspase-14-Like Protein2
Putative Caspase-162
EC 3.4.22.-3

External Ids:    HGNC: 272901   Entrez Gene: 1973502   Ensembl: ENSG000002281467   UniProtKB: P0CB463   

Export aliases for CASP16 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CASP16 Gene:
CASP16 (caspase 16, apoptosis-related cysteine peptidase (putative)) is a protein-coding gene. GO annotations related to this gene include cysteine-type endopeptidase activity. An important paralog of this gene is CASP6.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000016.9  NT_010393.17  NC_018927.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for CASP16
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CASP16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

CASP16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CASP16 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P003198:  view genomic region     (about GC identifiers)

Start:
3,194,220 bp from pter      End:
3,199,964 bp from pter
Size:
5,745 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: CASPG_HUMAN, P0CB46 (See protein sequence)
Recommended Name: Putative caspase-16  
Size: 183 amino acids; 20061 Da
Caution: Could be the product of a pseudogene

Explore the universe of human proteins at neXtProt for CASP16: NX_P0CB46

Explore proteomics data for CASP16 at MOPED


See CASP16 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB


ENSEMBL proteins: 
 ENSP00000400592  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR001309 Pept_C14_ICE_p20
 IPR002138 Pept_C14_p10
 IPR011600 Pept_C14_caspase

Graphical View of Domain Structure for InterPro Entry P0CB46

ProtoNet protein and cluster: P0CB46

UniProtKB/Swiss-Prot: CASPG_HUMAN, P0CB46
Similarity: Belongs to the peptidase C14A family


Find genes that share domains with CASP16           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Enzyme Number (IUBMB): EC 3.4.22.-1

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004197cysteine-type endopeptidase activity IBA--
GO:0008234cysteine-type peptidase activity ----
     
Find genes that share ontologies with CASP16           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IBA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for CASP16

Gene Ontology (GO): 4 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006508proteolysis ----
GO:0006915apoptotic process ----
GO:0008630intrinsic apoptotic signaling pathway in response to DNA damage IBA--
GO:0097192extrinsic apoptotic signaling pathway in absence of ligand IBA--

Find genes that share ontologies with CASP16           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for CASP16 (CASPG)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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Unigene Cluster for CASP16:

Caspase 16, apoptosis-related cysteine peptidase (putative)
Hs.434132  [show with all ESTs]
Unigene Representative Sequence: AK096989
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000571356 ENST00000575497 ENST00000428155(uc002cuf.1) ENST00000576807

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Additional mRNA sequence: 

AF098666.1 AK096989.1 BC111724.1 

3 DOTS entries:

DT.95331034  DT.99997808  DT.120688480 

2 AceView cDNA sequences:

AK096989 AF098666 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

CASP16 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

CASP16 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.434132
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for CASP16 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Casp161 , 5 predicted gene 51465
caspase 16, apoptosis-related cysteine peptidase1
71.67(n)1
62.86(a)1
  17 (11.66 cM)5
3810701  XM_006525201.11  XP_006525264.11 
 235509655 
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
15(a)
many ↔ many
GL343238.1(38265-45304)
zebrafish
(Danio rerio)
Actinopterygii CU467905.16
Uncharacterized protein
12(a)
many ↔ many
10(43528336-43542358) ENSDARG00000086266
fruit fly
(Drosophila melanogaster)
Insecta Nc6
Dredd6
Death related ced-3/Nedd2-like protein
8(a)
5(a)
many ↔ many
many ↔ many
3L(9961579-9964102)
X(527553-529760)


ENSEMBL Gene Tree for CASP16 (if available)
TreeFam Gene Tree for CASP16 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for CASP16 gene
CASP62  CASP82  CASP122  CASP92  CASP72  CASP32  CASP22  CASP142  
CASP12  CASP52  CASP102  CASP42  
1 SIMAP similar gene for CASP16 using alignment to 1 protein entry:     CASPG_HUMAN:
CASP14

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CASP16 (see all 198)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 16 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1393478781,2
--3128122(+) CGGCGC/TCCCAC 1 -- us2k10--------
rs1833881911,2
--3128174(+) CAACTC/TCAGCG 1 -- us2k10--------
rs757144121,2
C,F--3128309(+) CTCCAT/ACATCA 1 -- us2k11Minor allele frequency- A:0.03EA 120
rs1877022451,2
C--3128366(+) CGTCCA/GGCTCC 1 -- us2k10--------
rs1898855871,2
--3128397(+) CCATCA/GGCACT 1 -- us2k10--------
rs1478665261,2
C--3128406(+) CTAACA/GCCCCG 1 -- us2k10--------
rs10539961,2
C,F,A,H--3128476(+) CTCCCT/CGCTCC 1 -- us2k115Minor allele frequency- C:0.32MN NS EA NA WA CSA 617
rs10539971,2
C,F,A,H--3128498(+) CGCCCT/CGCTTC 1 -- us2k124Minor allele frequency- C:0.36MN NS EA NA WA CSA 2534
rs1822023101,2
--3128550(+) AACAGA/GGACAG 1 -- us2k10--------
rs10539981,2
C,F,H--3128566(+) AGGCCC/GTGCAA 1 -- us2k110Minor allele frequency- G:0.28NS NA CSA WA EA 485

HapMap Linkage Disequilibrium report for CASP16 (3194220 - 3199964 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for CASP16: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing CASP16
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CASP16 gene integrated from 10 sources:
(articles sorted by number of sources associating them with CASP16)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification of novel mammalian caspases reveals an important role of gene loss in shaping the human caspase repertoire. (PubMed id 18281271)1, 2, 3 Eckhart L.... Tschachler E. (Mol. Biol. Evol. 2008)
  2. The sequence and analysis of duplication-rich human chromosome 16. (PubMed id 15616553)1, 2 Martin J.... Pennacchio L.A. (Nature 2004)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  4. Construction of an approximately 700-kb transcript map around the familial Mediterranean fever locus on human chromosome 16p13.3. (PubMed id 9847080)1, 2 Centola M....Kastner D.L. (Genome Res. 1998)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 197350 HGNC: 27290 AceView: LOC197350 Ensembl:ENSG00000228146 euGenes: HUgn197350
ECgene: CASP16 H-InvDB: CASP16

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CASP16 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CASP16 gene:
Search GeneIP for patents involving CASP16

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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