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Aliases for CASC9 Gene

Subcategory (RNA class) for CASC9 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC9 Gene

  • Cancer Susceptibility Candidate 9 (Non-Protein Coding) 2 3 5
  • Esophageal Squamous Cell Carcinoma Associated LncRNA-1 2 3
  • Long Intergenic Non-Protein Coding RNA 981 2 3
  • Esophageal Squamous Cell Carcinoma Sssociated LncRNA-1 3
  • ESCC-Associated LncRNA 3
  • LINC00981 3
  • ESCCAL-1 3
  • ESSCAL1 3

External Ids for CASC9 Gene

Previous GeneCards Identifiers for CASC9 Gene

  • GC08M076136

Summaries for CASC9 Gene

GeneCards Summary for CASC9 Gene

CASC9 (Cancer Susceptibility Candidate 9 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC9 Gene

Genomics for CASC9 Gene

Regulatory Elements for CASC9 Gene

Enhancers for CASC9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F075218 0.6 ENCODE 4.9 +105.5 105537 2.4 JUND BCL11A ZNF366 ZNF26 TEAD4 CEBPB POU5F1 REST CASC9 GC08M075206 HIGD1AP6
GH08F075216 0.2 ENCODE 4.5 +107.5 107509 1.1 CASC9 GC08M075206 HIGD1AP6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC9 on UCSC Golden Path with GeneCards custom track

Promoters for CASC9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001902273 540 800 KLF1 KLF17 ZFHX2 POLR2A ZBTB48 PRDM10 KLF7 KLF8 ZBTB20 EGR2

Genomic Location for CASC9 Gene

Chromosome:
8
Start:
75,223,117 bp from pter
End:
75,324,741 bp from pter
Size:
101,625 bases
Orientation:
Minus strand

Genomic View for CASC9 Gene

Genes around CASC9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC9 Gene

Proteins for CASC9 Gene

Post-translational modifications for CASC9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC9 Gene

Domains & Families for CASC9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC9 Gene

Function for CASC9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC9 Gene

Localization for CASC9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC9 Gene

Pathways & Interactions for CASC9 Gene

SuperPathways for CASC9 Gene

No Data Available

Interacting Proteins for CASC9 Gene

Gene Ontology (GO) - Biological Process for CASC9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC9 Gene

Transcripts for CASC9 Gene

mRNA/cDNA for CASC9 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC9 Gene

No ASD Table

Relevant External Links for CASC9 Gene

GeneLoc Exon Structure for
CASC9
ECgene alternative splicing isoforms for
CASC9

Expression for CASC9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CASC9 Gene

mRNA differential expression in normal tissues according to GTEx for CASC9 Gene

This gene is overexpressed in Colon - Transverse (x12.3) and Bladder (x12.1).

NURSA nuclear receptor signaling pathways regulating expression of CASC9 Gene:

CASC9
genes like me logo Genes that share expression patterns with CASC9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CASC9 Gene

Orthologs for CASC9 Gene

Evolution for CASC9 Gene

ENSEMBL:
Gene Tree for CASC9 (if available)
TreeFam:
Gene Tree for CASC9 (if available)

No data available for Orthologs for CASC9 Gene

Paralogs for CASC9 Gene

No data available for Paralogs for CASC9 Gene

Variants for CASC9 Gene

Sequence variations from dbSNP and Humsavar for CASC9 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10098928 -- 75,223,028(+) GATAC(A/T)TCAAC downstream-variant-500B
rs10101543 -- 75,228,755(+) ctagc(A/C)ctcct intron-variant
rs10102195 -- 75,223,347(+) gttta(C/T)taaac nc-transcript-variant
rs10102416 -- 75,223,414(+) tttca(G/T)aaatt nc-transcript-variant
rs10112872 -- 75,231,277(+) gctac(C/G)tgatt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC9 Gene

Variant ID Type Subtype PubMed ID
nsv971668 CNV duplication 23825009
nsv831356 CNV loss 17160897
nsv611561 CNV gain 21841781
nsv524725 CNV loss 19592680
nsv520966 CNV loss 19592680
nsv397746 CNV deletion 16902084
nsv1128427 CNV deletion 24896259
esv990823 CNV deletion 20482838
esv3891413 CNV loss 25118596
esv3891412 CNV gain 25118596
esv3891411 CNV loss 25118596
esv3576590 CNV gain 25503493
esv3116050 CNV deletion 24192839
esv2737191 CNV deletion 23290073
esv2737190 CNV deletion 23290073
esv2737189 CNV deletion 23290073
esv2737188 CNV deletion 23290073
esv2628728 CNV deletion 19546169
esv1954762 CNV deletion 18987734
dgv7242n100 CNV loss 25217958

Relevant External Links for CASC9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC9 Gene

Disorders for CASC9 Gene

Relevant External Links for CASC9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC9

No disorders were found for CASC9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC9 Gene

Publications for CASC9 Gene

  1. Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma. (PMID: 25885227) Hao Y. … Cao W. (BMC Cancer 2015) 2 3 64
  2. Integrated analysis of long noncoding RNA and coding RNA expression in esophageal squamous cell carcinoma. (PMID: 24222893) Cao W. … Gu J. (Int J Genomics 2013) 3 64
  3. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M. … Deary I.J. (Biol Psychol 2011) 3 64
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CASC9 Gene

Sources for CASC9 Gene

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