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Aliases for CASC9 Gene

Subcategory (RNA class) for CASC9 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC9 Gene

  • Cancer Susceptibility Candidate 9 (Non-Protein Coding) 2 3 5
  • Esophageal Squamous Cell Carcinoma Associated LncRNA-1 2 3
  • Long Intergenic Non-Protein Coding RNA 981 2 3
  • Esophageal Squamous Cell Carcinoma Sssociated LncRNA-1 3
  • ESCC-Associated LncRNA 3
  • LINC00981 3
  • ESCCAL-1 3
  • ESSCAL1 3

External Ids for CASC9 Gene

Previous GeneCards Identifiers for CASC9 Gene

  • GC08M076136

Summaries for CASC9 Gene

GeneCards Summary for CASC9 Gene

CASC9 (Cancer Susceptibility Candidate 9 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC9 Gene

Genomics for CASC9 Gene

Regulatory Elements for CASC9 Gene

Promoters for CASC9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CASC9 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC9 Gene

Chromosome:
8
Start:
75,223,117 bp from pter
End:
75,324,741 bp from pter
Size:
101,625 bases
Orientation:
Minus strand

Genomic View for CASC9 Gene

Genes around CASC9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC9 Gene

Proteins for CASC9 Gene

Post-translational modifications for CASC9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC9 Gene

Domains & Families for CASC9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC9 Gene

Function for CASC9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC9 Gene

Localization for CASC9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC9 Gene

Pathways & Interactions for CASC9 Gene

SuperPathways for CASC9 Gene

No Data Available

Interacting Proteins for CASC9 Gene

Gene Ontology (GO) - Biological Process for CASC9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC9 Gene

Drugs & Compounds for CASC9 Gene

No Compound Related Data Available

Transcripts for CASC9 Gene

mRNA/cDNA for CASC9 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC9 Gene

No ASD Table

Relevant External Links for CASC9 Gene

GeneLoc Exon Structure for
CASC9
ECgene alternative splicing isoforms for
CASC9

Expression for CASC9 Gene

mRNA expression in normal human tissues for CASC9 Gene

mRNA differential expression in normal tissues according to GTEx for CASC9 Gene

This gene is overexpressed in Colon - Transverse (x12.3) and Bladder (x12.1).
genes like me logo Genes that share expression patterns with CASC9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CASC9 Gene

Orthologs for CASC9 Gene

Evolution for CASC9 Gene

ENSEMBL:
Gene Tree for CASC9 (if available)
TreeFam:
Gene Tree for CASC9 (if available)

No data available for Orthologs for CASC9 Gene

Paralogs for CASC9 Gene

No data available for Paralogs for CASC9 Gene

Variants for CASC9 Gene

Sequence variations from dbSNP and Humsavar for CASC9 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs967844 -- 75,247,594(-) GGAAA(C/T)AGGGA intron-variant
rs978598 -- 75,258,014(-) CTGGC(C/T)ATCTG intron-variant
rs978599 -- 75,257,534(-) GCCCG(A/T)CATAA intron-variant
rs1351224 -- 75,228,897(-) ATTTT(C/T)CTAAT intron-variant
rs1351225 -- 75,228,554(-) TGCAG(C/G)TAACT intron-variant

Relevant External Links for CASC9 Gene

HapMap Linkage Disequilibrium report
CASC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CASC9 Gene

Disorders for CASC9 Gene

Relevant External Links for CASC9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC9

No disorders were found for CASC9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC9 Gene

Publications for CASC9 Gene

  1. Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma. (PMID: 25885227) Hao Y. … Cao W. (BMC Cancer 2015) 2 3 67
  2. Integrated analysis of long noncoding RNA and coding RNA expression in esophageal squamous cell carcinoma. (PMID: 24222893) Cao W. … Gu J. (Int J Genomics 2013) 3
  3. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M. … Deary I.J. (Biol Psychol 2011) 3
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CASC9 Gene

Sources for CASC9 Gene

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