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Aliases for CASC9 Gene

Subcategory (RNA class) for CASC9 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CASC9 Gene

  • Cancer Susceptibility Candidate 9 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 981 2 3
  • LINC00981 3

External Ids for CASC9 Gene

ORGUL Members for CASC9 Gene

Summaries for CASC9 Gene

GeneCards Summary for CASC9 Gene

CASC9 (Cancer Susceptibility Candidate 9 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC9 Gene

Genomics for CASC9 Gene

Genomic Location for CASC9 Gene

Start:
75,223,117 bp from pter
End:
75,324,741 bp from pter
Size:
101,625 bases
Orientation:
Minus strand

Genomic View for CASC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CASC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC9 Gene

No data available for Regulatory Elements for CASC9 Gene

Proteins for CASC9 Gene

Post-translational modifications for CASC9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC9 Gene

Domains for CASC9 Gene

Gene Families for CASC9 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with CASC9: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for CASC9 Gene

Function for CASC9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CASC9 Gene

Localization for CASC9 Gene

No data available for Gene Ontology (GO) - Cellular Components for CASC9 Gene

Pathways for CASC9 Gene

SuperPathways for CASC9 Gene

No Data Available

Interacting Proteins for CASC9 Gene

Gene Ontology (GO) - Biological Process for CASC9 Gene

None

No data available for Pathways by source for CASC9 Gene

Transcripts for CASC9 Gene

mRNA/cDNA for CASC9 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC9 Gene

No ASD Table

Relevant External Links for CASC9 Gene

GeneLoc Exon Structure for
CASC9
ECgene alternative splicing isoforms for
CASC9

Expression for CASC9 Gene

mRNA expression in normal human tissues for CASC9 Gene

mRNA differential expression in normal tissues according to GTEx for CASC9 Gene

This gene is overexpressed in Colon - Transverse (12.3) and Bladder (12.1).
genes like me logo Genes that share expressions with CASC9: view

Orthologs for CASC9 Gene

Evolution for CASC9 Gene

ENSEMBL:
Gene Tree for CASC9 (if available)
TreeFam:
Gene Tree for CASC9 (if available)

No data available for Orthologs for CASC9 Gene

Paralogs for CASC9 Gene

No data available for Paralogs for CASC9 Gene

Variants for CASC9 Gene

Sequence variations from dbSNP and Humsavar for CASC9 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs967844 -- 75,247,594(-) GGAAA(C/T)AGGGA intron-variant
rs978598 -- 75,258,014(-) CTGGC(C/T)ATCTG intron-variant
rs978599 -- 75,257,534(-) GCCCG(A/T)CATAA intron-variant
rs1072919 -- 75,245,194(-) tgtta(C/T)tggca intron-variant
rs1074807 -- 75,277,107(-) cacat(A/T)tctct intron-variant

Relevant External Links for CASC9 Gene

HapMap Linkage Disequilibrium report
CASC9

No data available for Structural Variations from Database of Genomic Variants (DGV) for CASC9 Gene

Disorders for CASC9 Gene

No disorders were found for CASC9 Gene.

No data available for UniProtKB/Swiss-Prot for CASC9 Gene

Publications for CASC9 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  3. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M. … Deary I.J. (Biol Psychol 2011) 3

Products for CASC9 Gene

Sources for CASC9 Gene

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