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Aliases for CASC6 Gene

Subcategory (RNA class) for CASC6 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC6 Gene

  • Cancer Susceptibility Candidate 6 (Non-Protein Coding) 2 3 5

External Ids for CASC6 Gene

Previous GeneCards Identifiers for CASC6 Gene

  • GC06M092340

Summaries for CASC6 Gene

GeneCards Summary for CASC6 Gene

CASC6 (Cancer Susceptibility Candidate 6 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC6 Gene

Genomics for CASC6 Gene

Regulatory Elements for CASC6 Gene

Enhancers for CASC6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around CASC6 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC6 Gene

Chromosome:
6
Start:
91,629,040 bp from pter
End:
91,690,428 bp from pter
Size:
61,389 bases
Orientation:
Minus strand

Genomic View for CASC6 Gene

Genes around CASC6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC6 Gene

Proteins for CASC6 Gene

Post-translational modifications for CASC6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC6 Gene

Domains & Families for CASC6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC6 Gene

Function for CASC6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC6 Gene

Localization for CASC6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC6 Gene

Pathways & Interactions for CASC6 Gene

SuperPathways for CASC6 Gene

No Data Available

Interacting Proteins for CASC6 Gene

Gene Ontology (GO) - Biological Process for CASC6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC6 Gene

Drugs & Compounds for CASC6 Gene

No Compound Related Data Available

Transcripts for CASC6 Gene

mRNA/cDNA for CASC6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC6 Gene

No ASD Table

Relevant External Links for CASC6 Gene

GeneLoc Exon Structure for
CASC6
ECgene alternative splicing isoforms for
CASC6

Expression for CASC6 Gene

mRNA expression in normal human tissues for CASC6 Gene

mRNA differential expression in normal tissues according to GTEx for CASC6 Gene

This gene is overexpressed in Brain - Hippocampus (x44.1).

NURSA nuclear receptor signaling pathways regulating expression of CASC6 Gene:

CASC6
genes like me logo Genes that share expression patterns with CASC6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CASC6 Gene

Orthologs for CASC6 Gene

Evolution for CASC6 Gene

ENSEMBL:
Gene Tree for CASC6 (if available)
TreeFam:
Gene Tree for CASC6 (if available)

No data available for Orthologs for CASC6 Gene

Paralogs for CASC6 Gene

No data available for Paralogs for CASC6 Gene

Variants for CASC6 Gene

Sequence variations from dbSNP and Humsavar for CASC6 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs882276 -- 91,675,217(+) AGACA(A/G)AAACA intron-variant
rs911357 -- 91,675,137(-) AGTTA(C/T)GACAA intron-variant
rs915167 -- 91,647,750(-) TCTTT(C/T)CTCCC intron-variant
rs927269 -- 91,653,677(-) TTGAG(C/G/T)TTAGA intron-variant
rs984739 -- 91,638,430(-) CAAAT(A/G)TTGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC6 Gene

Variant ID Type Subtype PubMed ID
esv2671229 CNV deletion 23128226
esv2732423 CNV deletion 23290073
esv3609942 CNV loss 21293372
esv3609943 CNV loss 21293372
esv3890905 CNV gain 25118596
nsv1018145 CNV gain 25217958
nsv1028736 CNV loss 25217958
nsv1032777 CNV loss 25217958
nsv1034981 CNV gain 25217958
nsv517922 CNV gain 19592680
nsv521262 CNV loss 19592680
nsv823773 CNV loss 20364138

Relevant External Links for CASC6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC6 Gene

Disorders for CASC6 Gene

Relevant External Links for CASC6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC6

No disorders were found for CASC6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC6 Gene

Publications for CASC6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for CASC6 Gene

Sources for CASC6 Gene

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