CASC4 Gene
protein-coding GIFtS : 47
GCID: GC15 P044580
cancer susceptibility candidate 4
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Aliasesfor CASC4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cancer Susceptibility Candidate 4 1 2 H631 2 Cancer Susceptibility Candidate Gene 4 Protein2 3 DKFZp459F19271 Gene Associated With HER-2/Neu Overexpression2 Protein CASC42
Export aliases for CASC4 gene to outside databases Previous GC identifers: GC15P042369 GC15P021404
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Summariesfor CASC4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CASC4 : The increased expression level of this gene is associated with HER-2/neu proto-oncogene overexpression. Amplification and resulting overexpression of this proto-oncogene are found in approximately 30% of human breast and 20% of human ovarian cancers. Alternatively spliced variants encoding different isoforms have been identified for this gene. (provided by RefSeq, Dec 2010)
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Genomic Viewsfor CASC4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CASC4 gene promoter: NF-1 RP58 AP-4 HNF-3beta Gfi-1 E2F E2F-1 Chx10 Msx-1 En-1 Other transcription factors Search SABiosciences Chromatin IP Primers for CASC4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CASC4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q15.3 Ensembl cytogenetic band: 15q15.3 HGNC cytogenetic band: 15q15.1 CASC4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P044580: view genomic region
(about GC identifiers )
Start:
44,580,927 bp from pter
End:
44,707,956 bp from pter
Size:
127,030 bases
Orientation:
plus strand
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Proteinsfor CASC4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CASC4_HUMAN, Q6P4E1 (See
protein sequence )Recommended Name: Protein CASC4 Size : 433 amino acids; 48864 Da
Subcellular location : Membrane; Single-pass type II membrane protein (Potential)
Secondary accessions : G5E934 Q6UY45 Q96EM1Alternative splicing : 4 isoforms : Q6P4E1-1 Q6P4E1-2 Q6P4E1-3 Q6P4E1-4 (No experimental confirmation available. Ref.2 (AL832333) sequence is in conflict in position: 429:K->E)Explore the universe of human proteins at neXtProt for CASC4: NX_Q6P4E1 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6P4E1 CASC4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_612432.2 NP_816929.1 ENSEMBL proteins: ENSP00000453703 ENSP00000453720 ENSP00000299957 ENSP00000452807 ENSP00000335063 ENSP00000453850 ENSP00000453465 ENSP00000452833 ENSP00000354067 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
CASC4 for ontologies About GeneDecksing CASC4 Antibody Products: Assay Products for CASC4:
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Protein
Domains / Familiesfor CASC4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CASC4 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6P4E1 ProtoNet protein and cluster: Q6P4E1
UniProtKB/Swiss-Prot: CASC4_HUMAN, Q6P4E1 Similarity : Belongs to the GOLM1/CASC4 family
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Functionfor CASC4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CASC4 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CASC4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): CASC4 (NM_138423 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CASC4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CASC4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CASC4
Animal Models: 1 MGI phenotypic allele for Casc4 (no phenotypes)
CASC4 for phenotypes About GeneDecksing
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Pathways & Interactionsfor CASC4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CASC4 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)2 Interacting proteins for CASC4 (Q6P4E1 3 ENSP00000299957 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor CASC4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CASC4 Search CenterWatch for drugs/clinical trials and news about CASC4
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Transcriptsfor CASC4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CASC4 gene (2 alternative transcripts): NM_138423.3 NM_177974.2 Unigene Cluster for CASC4:
Cancer susceptibility candidate 4 Hs.512867 [show with all ESTs ] Unigene Representative Sequence: NM_138423 13 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000559222 ENST00000557945 (uc010bdu.2 ) ENST00000299957 (uc001ztp.3 uc001ztq.3 )ENST00000429162 ENST00000561459 (uc001zto.2 ) ENST00000345795 ENST00000558735 ENST00000559037 ENST00000558847 ENST00000559550 ENST00000561305 ENST00000559151 ENST00000360824 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CASC4 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CASC4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): CASC4 (NM_138423 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CASC4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CASC4
Additional cDNA sequence: AF103804.1 AK022565.1 AK095068.1 AK098265.1 AK291026.1 AK298564.1 AL832333.1 AL832840.1 AY358086.1 BC012124.1 BC041786.1 BC063480.1
14 DOTS entries : DT.100028397 DT.217119
DT.101982810 DT.100795219 DT.121030642 DT.121030663 DT.120783245 DT.100795220 DT.121030699 DT.120778864 DT.40270389 DT.91967557 DT.100795226 DT.95320643 24/277 AceView cDNA sequences (see all 277 ):
BM981956 AA418825 CA391739 AA630340 BG433320 BQ574299 AA418922 AL832333 AA748880 AI753548 AI090252 AW025613 AA281049 BF034983 AA810852 BU742749 CA391738 BC063480 NM_177974 BU617831 AL119010 AA721278 AA651902 BC012124 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for CASC4 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 SP1 :                               SP2 :                       -   -   -     SP3 :         -                       SP4 :                              
ECgene alternative splicing isoforms for CASC4
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Expression for CASC4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CASC4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CAATTACCTG
About this image CASC4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 2 LifeMap In Vivo Development Anatomical Compartments/Cells Tissue Anatomical Compartment
Cell Category (developmental path) Kidney Cap Mesenchyme Cap Mesenchyme Cells Kidney Kidney S-shaped Body Kidney Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See CASC4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CASC4 SOURCE GeneReport for Unigene cluster: Hs.512867 SABiosciences Custom PCR Arrays for CASC4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CASC4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CASC4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CASC4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CASC4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CASC4
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Orthologsfor CASC4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CASC4 gene from 5/12 species (see all 12 ) About this table
ENSEMBL Gene Tree for CASC4 (if available)TreeFam Gene Tree for CASC4 (if available)
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Paralogsfor CASC4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CASC4 gene GOLM1 2 18/24 SIMAP similar genes for CASC4 using alignment to 6 protein entries: CASC4_HUMAN (see all proteins )
(see all similar genes ):AVGR8 DUSP11 KIAA0101 LDLRAD3 SEPSECS pp12301 HC6 AAMDC CATSPERD COQ5 FP6778 DYNC2LI1 PPP5D1 C4BPB NCKAP1L GOLM1 GOLPH2 CCDC122
CASC4 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for CASC4 PGOHUM00000248312
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Genomic Variantsfor CASC4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CASC4 (44580927 - 44707956 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CASC4: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CASC4
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Disorders
/ Diseasesfor CASC4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CASC4 for disorders About GeneDecksing 4 diseases for CASC4 : About MalaCards soft tissue sarcoma ovarian cancer sarcoma breast cancer 1 disease from the University of Copenhagen DISEASES database for CASC4 :Alcohol dependence Export disorders for CASC4 gene to outside databases
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Publicationsfor CASC4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CASC4 gene, integrated from 9 sources (see all 15 ): (articles sorted by number of sources associating them with CASC4) Utopia : connect your pdf to the dynamic world of online information
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Identification of differentially expressed genes associated with HER- 2/neu overexpression in human breast cancer cells. (PubMed id 10497265) 1 , 3 Oh J.J.... Slamon D.J. (1999) Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049) 1 OlA!h J....OvA!di J. (2011) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231) 2 Olsen J.V....Mann M. (2010) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171) 2 Zody M.C....Nusbaum C. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Automated yeast two-hybrid screening for nuclear rece ptor-interacting proteins. (PubMed id 15604093) 1 Albers M....Koegl M. (2005)
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External Searches for CASC4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CASC4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CASC4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CASC4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CASC4 gene: Search GeneIP for patents involving CASC4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CASC4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CASC4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CASC4 OriGene Protein Over-expression Lysate for CASC4 Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for CASC4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CASC4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CASC4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CASC4 OriGene Custom Protein Services for CASC4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CASC4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CASC4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CASC4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CASC4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CASC4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CASC4
Search Tocris compounds for CASC4
CASC4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CASC4
ThermoFisher Antibodies for CASC4
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CASC4
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Aliases for CASC4
Databases for CASC4
Disorders / Diseases for CASC4
Domains / Families for CASC4
Drugs / Compounds for CASC4
Expression for CASC4
Function for CASC4
Genomic Views for CASC4
Intellectual Property for CASC4
Orthologs for CASC4
Paralogs for CASC4
Pathways / Interactions for CASC4
Products for CASC4
Proteins for CASC4
Publications for CASC4
Search Box for CASC4
Summaries for CASC4
Transcripts for CASC4
Variants for CASC4
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