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Aliases for CASC23 Gene

Subcategory (RNA class) for CASC23 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC23 Gene

  • Cancer Susceptibility 23 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 23 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1464 2 3
  • LINC01464 3

External Ids for CASC23 Gene

Summaries for CASC23 Gene

GeneCards Summary for CASC23 Gene

CASC23 (Cancer Susceptibility 23 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC23 Gene

Genomics for CASC23 Gene

Regulatory Elements for CASC23 Gene

Enhancers for CASC23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G008204 2.1 VISTA Ensembl ENCODE dbSUPER 9.5 -190.3 -190309 4.6 PKNOX1 CREB3L1 ARNT FEZF1 ZNF2 ZNF766 ZNF263 REST MEF2D SMARCA4 RIC3 LOC101927936 TUB CASC23 EIF3F GC11M008201 GC11P008198
GH11G007962 1.6 Ensembl ENCODE dbSUPER 9.9 +49.8 49777 8.2 HDGF FOXA2 PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 EIF3F TUB TMEM9B-AS1 NLRP10 OR10A3 AKIP1 CASC23 GC11M007966
GH11G007975 1.3 Ensembl ENCODE dbSUPER 10.3 +39.0 39025 3.2 HDAC1 TBP BRCA1 TCF12 ZNF766 GATA2 ZNF143 RCOR1 CEBPB ATF4 EIF3F CASC23 TUB OVCH2 COX6CP5 PIR63023
GH11G008067 1.1 Ensembl ENCODE 11.5 -52.5 -52468 2.1 PKNOX1 FEZF1 RAD21 RFX5 YY1 GATA2 FOS ZNF263 ZNF654 USF2 TUB ENSG00000254921 CASC23 TUB-AS1 ENSG00000279391
GH11G007985 1.2 ENCODE 10.4 +29.3 29321 2.7 HDGF PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 EIF3F OLFML1 SNORA3B TMEM9B-AS1 CASC23 TUB COX6CP5 PIR63023
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC23 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC23 Gene

Chromosome:
11
Start:
8,011,278 bp from pter
End:
8,016,509 bp from pter
Size:
5,232 bases
Orientation:
Minus strand

Genomic View for CASC23 Gene

Genes around CASC23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC23 Gene

Proteins for CASC23 Gene

Post-translational modifications for CASC23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC23 Gene

Domains & Families for CASC23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC23 Gene

Function for CASC23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC23 Gene

Localization for CASC23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC23 Gene

Pathways & Interactions for CASC23 Gene

SuperPathways for CASC23 Gene

No Data Available

Interacting Proteins for CASC23 Gene

Gene Ontology (GO) - Biological Process for CASC23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC23 Gene

Drugs & Compounds for CASC23 Gene

No Compound Related Data Available

Transcripts for CASC23 Gene

mRNA/cDNA for CASC23 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC23 Gene

No ASD Table

Relevant External Links for CASC23 Gene

GeneLoc Exon Structure for
CASC23
ECgene alternative splicing isoforms for
CASC23

Expression for CASC23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC23 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC23 Gene:

CASC23
genes like me logo Genes that share expression patterns with CASC23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC23 Gene

Orthologs for CASC23 Gene

Evolution for CASC23 Gene

ENSEMBL:
Gene Tree for CASC23 (if available)
TreeFam:
Gene Tree for CASC23 (if available)

No data available for Orthologs for CASC23 Gene

Paralogs for CASC23 Gene

No data available for Paralogs for CASC23 Gene

Variants for CASC23 Gene

Sequence variations from dbSNP and Humsavar for CASC23 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000051326 -- 8,014,613(+) GATCG(C/T)GCCAT intron-variant
rs1000075130 -- 8,017,773(+) ATAGA(A/G)ATGGC upstream-variant-2KB
rs1000103196 -- 8,014,395(+) GAAAC(A/G)GCTGT intron-variant
rs1001618896 -- 8,014,661(+) TCAAC(A/T)ACAAC intron-variant
rs1001709102 -- 8,014,339(+) GTCTA(G/T)TTAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC23 Gene

Variant ID Type Subtype PubMed ID
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

Relevant External Links for CASC23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC23 Gene

Disorders for CASC23 Gene

Relevant External Links for CASC23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC23

No disorders were found for CASC23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC23 Gene

Publications for CASC23 Gene

No publications were found for CASC23 Gene.

Products for CASC23 Gene

Sources for CASC23 Gene

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