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Aliases for CASC22 Gene

Subcategory (RNA class) for CASC22 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CASC22 Gene

  • Cancer Susceptibility 22 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 22 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1373 2 3
  • LincRNA-ENST00000515084 3
  • TCONS_00024290 3
  • LINC01373 3

External Ids for CASC22 Gene

Previous HGNC Symbols for CASC22 Gene

  • LINC01373

Summaries for CASC22 Gene

GeneCards Summary for CASC22 Gene

CASC22 (Cancer Susceptibility 22 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CASC22 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC22 Gene

Genomics for CASC22 Gene

Regulatory Elements for CASC22 Gene

Enhancers for CASC22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H052208 1.2 VISTA 8.6 -49.1 -49133 1.5 CASC22 GC16M052210 GC16P052188
GH16H052264 0.9 ENCODE dbSUPER 0.4 +7.6 7578 3.5 SOX13 NFIA NFIB LCORL NFIC ZNF544 ZNF350 POU5F1 ZNF112 CASC22 LOC105371262
GH16H052255 0.4 ENCODE 0.7 -2.0 -1984 1.4 HNF4A CASC22 LOC105371261
GH16H052250 0.7 dbSUPER 0.4 -7.0 -6964 1.3 PKNOX1 JUN BACH1 DPF2 ZEB1 BCL11A ZNF692 ATF7 FOS IKZF2 CASC22 LOC105371261
GH16H052407 1 ENCODE 0.1 +149.5 149517 1.7 FOXA2 ATF1 MLX YY1 ATF7 SP5 ZHX2 REST MIER2 PPARG TOX3 LOC105371262 CASC22
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC22 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC22 Gene

Genomic Locations for CASC22 Gene
22,075 bases
Plus strand

Genomic View for CASC22 Gene

Genes around CASC22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC22 Gene

Proteins for CASC22 Gene

Post-translational modifications for CASC22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC22 Gene

Domains & Families for CASC22 Gene

Gene Families for CASC22 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC22: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC22 Gene

Function for CASC22 Gene

Phenotypes From GWAS Catalog for CASC22 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC22 Gene

Localization for CASC22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC22 Gene

Pathways & Interactions for CASC22 Gene

SuperPathways for CASC22 Gene

No Data Available

Interacting Proteins for CASC22 Gene

Gene Ontology (GO) - Biological Process for CASC22 Gene


No data available for Pathways by source and SIGNOR curated interactions for CASC22 Gene

Drugs & Compounds for CASC22 Gene

No Compound Related Data Available

Transcripts for CASC22 Gene

mRNA/cDNA for CASC22 Gene

(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC22 Gene

No ASD Table

Relevant External Links for CASC22 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CASC22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC22 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC22 Gene:

genes like me logo Genes that share expression patterns with CASC22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC22 Gene

Orthologs for CASC22 Gene

Evolution for CASC22 Gene

Gene Tree for CASC22 (if available)
Gene Tree for CASC22 (if available)

No data available for Orthologs for CASC22 Gene

Paralogs for CASC22 Gene

No data available for Paralogs for CASC22 Gene

Variants for CASC22 Gene

Sequence variations from dbSNP and Humsavar for CASC22 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000015722 -- 52,263,236(+) AAATA(C/T)AAAGC intron-variant
rs1000088725 -- 52,262,902(+) AATTC(C/T)CCAAA intron-variant
rs1000587514 -- 52,258,552(+) TAAGA(A/G)AGAGA intron-variant, upstream-variant-2KB
rs1000866942 -- 52,270,605(+) TGCAT(A/C)TATCT intron-variant, upstream-variant-2KB
rs1001016084 -- 52,264,781(+) AAACT(A/T)CCATA intron-variant

Relevant External Links for CASC22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CASC22 Gene

Disorders for CASC22 Gene

Relevant External Links for CASC22

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CASC22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC22 Gene

Publications for CASC22 Gene

  1. A polymorphism rs12325489C>T in the lincRNA-ENST00000515084 exon was found to modulate breast cancer risk via GWAS-based association analyses. (PMID: 24879036) Li N … Zhang C (PloS one 2014) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for CASC22 Gene

Sources for CASC22 Gene

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