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CASC22 Gene(RNA Gene)

Cancer Susceptibility 22 (Non-Protein Coding)

GCID:
GC16P052258
GIFtS:
16
Genes Participants
UDN Logo

Aliases for CASC22 Gene

Subcategory (RNA class) for CASC22 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC22 Gene

  • Cancer Susceptibility 22 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 22 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1373 2 3
  • LincRNA-ENST00000515084 3
  • TCONS_00024290 3
  • LINC01373 3

External Ids for CASC22 Gene

Previous HGNC Symbols for CASC22 Gene

  • LINC01373

Summaries for CASC22 Gene

GeneCards Summary for CASC22 Gene

CASC22 (Cancer Susceptibility 22 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC22 Gene

Genomics for CASC22 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CASC22 Gene

Enhancers for CASC22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G052208 1.2 VISTA 8.6 -49.1 -49133 1.5 CASC22 GC16M052210 GC16P052188
GH16G052264 0.9 ENCODE dbSUPER 0.4 +7.6 7578 3.5 SOX13 FOXA2 NFIA NFIB CHD7 ZNF644 NFIC HDAC2 ZNF544 SMARCA4 CASC22 LOC105371262
GH16G052255 0.4 ENCODE 0.7 -2.0 -1984 1.4 HNF4A CASC22 LOC105371261
GH16G052250 0.7 dbSUPER 0.4 -7.0 -6964 1.3 PKNOX1 MTA2 JUN BACH1 DPF2 TBX21 ZEB1 ARID3A ZNF692 FOS CASC22 LOC105371261
GH16G052315 0.5 ENCODE 0.2 +57.8 57771 1.2 CEBPA EP300 FOXA1 CASC22 LOC105371262
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC22 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC22 Gene

Chromosome:
16
Start:
52,258,564 bp from pter
End:
52,280,638 bp from pter
Size:
22,075 bases
Orientation:
Plus strand

Genomic View for CASC22 Gene

Genes around CASC22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC22 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CASC22 Gene

Proteins for CASC22 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CASC22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC22 Gene

Domains & Families for CASC22 Gene

Gene Families for CASC22 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC22: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC22 Gene

Function for CASC22 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC22 Gene

Localization for CASC22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC22 Gene

Pathways & Interactions for CASC22 Gene

SuperPathways for CASC22 Gene

PathCards logo More details on SuperPathways for CASC22
No Data Available

Interacting Proteins for CASC22 Gene

Gene Ontology (GO) - Biological Process for CASC22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC22 Gene

Drugs & Compounds for CASC22 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CASC22 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CASC22 Gene

(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CASC22 Gene

No ASD Table

Relevant External Links for CASC22 Gene

GeneLoc Exon Structure for
CASC22
ECgene alternative splicing isoforms for
CASC22

Expression for CASC22 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC22 Gene

mRNA expression in normal human tissues for CASC22 Gene
mRNA expression by GTEx for CASC22 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC22 Gene:

CASC22
genes like me logo Genes that share expression patterns with CASC22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC22 Gene

Orthologs for CASC22 Gene

Evolution for CASC22 Gene

ENSEMBL:
Gene Tree for CASC22 (if available)
TreeFam:
Gene Tree for CASC22 (if available)

No data available for Orthologs for CASC22 Gene

Paralogs for CASC22 Gene

No data available for Paralogs for CASC22 Gene

Variants for CASC22 Gene

Sequence variations from dbSNP and Humsavar for CASC22 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000015722 -- 52,263,236(+) AAATA(C/T)AAAGC intron-variant
rs1000088725 -- 52,262,902(+) AATTC(C/T)CCAAA intron-variant
rs1000587514 -- 52,258,552(+) TAAGA(A/G)AGAGA intron-variant, upstream-variant-2KB
rs1000866942 -- 52,270,605(+) TGCAT(A/C)TATCT intron-variant, upstream-variant-2KB
rs1001016084 -- 52,264,781(+) AAACT(A/T)CCATA intron-variant

Relevant External Links for CASC22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CASC22 Gene

Disorders for CASC22 Gene

Relevant External Links for CASC22

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC22

No disorders were found for CASC22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC22 Gene

Publications for CASC22 Gene

  1. A polymorphism rs12325489C>T in the lincRNA-ENST00000515084 exon was found to modulate breast cancer risk via GWAS-based association analyses. (PMID: 24879036) Li N. … Zhang C. (PLoS ONE 2014) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CASC22 Gene

Sources for CASC22 Gene

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