Aliases for CASC21 Gene
Subcategory (RNA class) for CASC21 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for CASC21 Gene
External Ids for CASC21 Gene
- HGNC: 49836
- Entrez Gene: 103021164
- Ensembl: ENSG00000253929
Previous HGNC Symbols for CASC21 Gene
- LINC01244
Previous GeneCards Identifiers for CASC21 Gene
- GC08U901843
- GC08P127340
Summaries for CASC21 Gene
GeneCards Summary for CASC21 Gene
CASC21 (Cancer Susceptibility 21 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC21 Gene
Genomics for CASC21 Gene
Regulatory Elements for CASC21 Gene
Enhancers for CASC21 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH08G127245 | 1.4 | FANTOM5 ENCODE dbSUPER | 0.7 | +2.7 | 2698 | 3.6 | PKNOX1 NFIB ZFP64 RAD21 ZBTB40 ZBTB7B FOS RCOR1 ZNF426 JUNB | SRRM1P1 MYC CASC21 ENSG00000271509 |
| GH08G127241 | 0.9 | FANTOM5 dbSUPER | 0.7 | -3.4 | -3427 | 0.2 | HDGF ZNF687 NFIB HLF SIN3A DPF2 ZNF592 NONO CTBP1 FOXK2 | CASC21 CCAT1 |
| GH08G127239 | 0.8 | dbSUPER | 0.7 | -4.9 | -4873 | 1.4 | PKNOX1 JUN MAX ZBTB7B FOSL1 ZFHX2 EGR1 FOSL2 FOS IKZF2 | CASC21 CCAT1 |
| GH08G127250 | 1.2 | FANTOM5 ENCODE dbSUPER | 0.4 | +7.2 | 7198 | 2.2 | HLF ZMYM3 JUNB ZBTB40 JUND HDAC2 PBX2 CREB1 MAFK SPI1 | CASC21 ENSG00000271509 |
| GH08G127252 | 1 | Ensembl ENCODE dbSUPER | 0.4 | +9.0 | 9036 | 1.4 | FOSL2 FOS ZBTB40 MAFK TCF7L2 | CASC21 ENSG00000271509 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CASC21 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CASC21 Gene
- Chromosome:
- 8
- Start:
- 127,244,637 bp from pter
- End:
- 127,392,631 bp from pter
- Size:
- 147,995 bases
- Orientation:
- Plus strand
Genomic View for CASC21 Gene
Genes around CASC21 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q24.21 by Ensembl
- 8q24.21 by Entrez Gene
- 8q24.21 by HGNC
CASC21 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CASC21 Gene
Proteins for CASC21 Gene
Post-translational modifications for CASC21 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for CASC21
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC21
- Origene Custom Protein Services for CASC21
- Search GeneTex for Proteins for CASC21
Assay Products
No data available for DME Specific Peptides for CASC21 Gene
Domains & Families for CASC21 Gene
Gene Families for CASC21 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC21 Gene
Function for CASC21 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASC21
-
- Search ViGene Biosciences for CASC21
CRISPR Products
- Browse CRISPR knockouts for CASC21
miRNA Products
- Search ViGene Biosciences for CASC21
Inhibitory RNA Products
- Search ViGene Biosciences for CASC21
Clone Products
- GenScript: Custom all cDNA clones Services for CASC21
- VectorBuilder custom plasmid, inducible vectors for CASC21
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC21
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CASC21
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC21 Gene
Localization for CASC21 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC21 Gene
Transcripts for CASC21 Gene
mRNA/cDNA for CASC21 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for CASC21
miRNA Products
- Search ViGene Biosciences for CASC21
Inhibitory RNA Products
- Search ViGene Biosciences for CASC21
Clone Products
- GenScript: Custom all cDNA clones Services for CASC21
- VectorBuilder custom plasmid, inducible vectors for CASC21
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC21
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CASC21 Gene
NURSA nuclear receptor signaling pathways regulating expression of CASC21 Gene:
CASC21Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC21 Gene
Orthologs for CASC21 Gene
No data available for Orthologs for CASC21 Gene
Paralogs for CASC21 Gene
No data available for Paralogs for CASC21 Gene
Variants for CASC21 Gene
| SNP ID | Clin | Chr 08 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000023795 | -- | 127,294,815(+) | AGCCT(A/T)CATCT | intron-variant | |
| rs1000032748 | -- | 127,339,738(+) | CAGCT(C/T)ACGGG | intron-variant | |
| rs1000037278 | -- | 127,278,100(+) | AGGTC(A/G)GGAGT | intron-variant | |
| rs1000055146 | -- | 127,295,151(+) | GTGAG(G/T)GCACA | intron-variant | |
| rs1000086463 | -- | 127,316,641(+) | GCCCT(A/C)CGCCT | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1217766 | CNV | deletion | 17803354 |
| esv2109813 | CNV | deletion | 18987734 |
| esv2669237 | CNV | deletion | 23128226 |
| esv275357 | CNV | loss | 21479260 |
| esv3321908 | CNV | insertion | 20981092 |
| esv3392005 | CNV | insertion | 20981092 |
| esv3395895 | CNV | insertion | 20981092 |
| esv3618770 | CNV | loss | 21293372 |
| esv3618771 | CNV | loss | 21293372 |
| nsv1126860 | CNV | deletion | 24896259 |
| nsv472662 | CNV | novel sequence insertion | 20440878 |
| nsv499795 | OTHER | inversion | 21111241 |
| nsv7419 | OTHER | inversion | 18451855 |
| nsv831457 | CNV | gain | 17160897 |
| nsv951468 | CNV | duplication | 24416366 |
Relevant External Links for CASC21 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CASC21
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC21 Gene
Disorders for CASC21 Gene
Relevant External Links for CASC21
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CASC21
No disorders were found for CASC21 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC21 Gene
Publications for CASC21 Gene
- Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3 64
Products for CASC21 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
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- Browse Immunoprecipitation Assays
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- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC21
- Origene Custom Protein Services for CASC21
- Browse OriGene Inhibitory RNA Products For CASC21
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CASC21
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CASC21
- GenScript: Custom all cDNA clones Services for CASC21
- GenScript Custom Purified and Recombinant Proteins Services for CASC21
- GenScript Custom Assay Services for CASC21
- GenScript Custom overexpressing Cell Line Services for CASC21
- Browse GenScript CRISPR for CASC21
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
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- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASC21
- VectorBuilder custom plasmid, inducible vectors for CASC21
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC21
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CASC21 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer