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Aliases for CASC21 Gene

Subcategory (RNA class) for CASC21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC21 Gene

  • Cancer Susceptibility 21 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 21 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1244 2 3
  • LINC01244 3
  • CARLo-2 3

External Ids for CASC21 Gene

Previous HGNC Symbols for CASC21 Gene

  • LINC01244

Previous GeneCards Identifiers for CASC21 Gene

  • GC08U901843
  • GC08P127340

Summaries for CASC21 Gene

GeneCards Summary for CASC21 Gene

CASC21 (Cancer Susceptibility 21 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC21 Gene

Genomics for CASC21 Gene

Regulatory Elements for CASC21 Gene

Enhancers for CASC21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G127245 1.4 FANTOM5 ENCODE dbSUPER 0.7 +2.7 2698 3.6 PKNOX1 NFIB ZFP64 RAD21 ZBTB40 ZBTB7B FOS RCOR1 ZNF426 JUNB SRRM1P1 MYC CASC21 ENSG00000271509
GH08G127241 0.9 FANTOM5 dbSUPER 0.7 -3.4 -3427 0.2 HDGF ZNF687 NFIB HLF SIN3A DPF2 ZNF592 NONO CTBP1 FOXK2 CASC21 CCAT1
GH08G127239 0.8 dbSUPER 0.7 -4.9 -4873 1.4 PKNOX1 JUN MAX ZBTB7B FOSL1 ZFHX2 EGR1 FOSL2 FOS IKZF2 CASC21 CCAT1
GH08G127250 1.2 FANTOM5 ENCODE dbSUPER 0.4 +7.2 7198 2.2 HLF ZMYM3 JUNB ZBTB40 JUND HDAC2 PBX2 CREB1 MAFK SPI1 CASC21 ENSG00000271509
GH08G127252 1 Ensembl ENCODE dbSUPER 0.4 +9.0 9036 1.4 FOSL2 FOS ZBTB40 MAFK TCF7L2 CASC21 ENSG00000271509
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC21 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC21 Gene

Chromosome:
8
Start:
127,244,637 bp from pter
End:
127,392,631 bp from pter
Size:
147,995 bases
Orientation:
Plus strand

Genomic View for CASC21 Gene

Genes around CASC21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC21 Gene

Proteins for CASC21 Gene

Post-translational modifications for CASC21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC21 Gene

Domains & Families for CASC21 Gene

Gene Families for CASC21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC21 Gene

Function for CASC21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC21 Gene

Localization for CASC21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC21 Gene

Pathways & Interactions for CASC21 Gene

SuperPathways for CASC21 Gene

No Data Available

Interacting Proteins for CASC21 Gene

Gene Ontology (GO) - Biological Process for CASC21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC21 Gene

Drugs & Compounds for CASC21 Gene

No Compound Related Data Available

Transcripts for CASC21 Gene

mRNA/cDNA for CASC21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC21 Gene

No ASD Table

Relevant External Links for CASC21 Gene

GeneLoc Exon Structure for
CASC21
ECgene alternative splicing isoforms for
CASC21

Expression for CASC21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC21 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC21 Gene:

CASC21
genes like me logo Genes that share expression patterns with CASC21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC21 Gene

Orthologs for CASC21 Gene

Evolution for CASC21 Gene

ENSEMBL:
Gene Tree for CASC21 (if available)
TreeFam:
Gene Tree for CASC21 (if available)

No data available for Orthologs for CASC21 Gene

Paralogs for CASC21 Gene

No data available for Paralogs for CASC21 Gene

Variants for CASC21 Gene

Sequence variations from dbSNP and Humsavar for CASC21 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000023795 -- 127,294,815(+) AGCCT(A/T)CATCT intron-variant
rs1000032748 -- 127,339,738(+) CAGCT(C/T)ACGGG intron-variant
rs1000037278 -- 127,278,100(+) AGGTC(A/G)GGAGT intron-variant
rs1000055146 -- 127,295,151(+) GTGAG(G/T)GCACA intron-variant
rs1000086463 -- 127,316,641(+) GCCCT(A/C)CGCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC21 Gene

Variant ID Type Subtype PubMed ID
esv1217766 CNV deletion 17803354
esv2109813 CNV deletion 18987734
esv2669237 CNV deletion 23128226
esv275357 CNV loss 21479260
esv3321908 CNV insertion 20981092
esv3392005 CNV insertion 20981092
esv3395895 CNV insertion 20981092
esv3618770 CNV loss 21293372
esv3618771 CNV loss 21293372
nsv1126860 CNV deletion 24896259
nsv472662 CNV novel sequence insertion 20440878
nsv499795 OTHER inversion 21111241
nsv7419 OTHER inversion 18451855
nsv831457 CNV gain 17160897
nsv951468 CNV duplication 24416366

Relevant External Links for CASC21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC21 Gene

Disorders for CASC21 Gene

Relevant External Links for CASC21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC21

No disorders were found for CASC21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC21 Gene

Publications for CASC21 Gene

  1. Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3 64

Products for CASC21 Gene

Sources for CASC21 Gene

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