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Aliases for CASC19 Gene

Subcategory (RNA class) for CASC19 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC19 Gene

  • Cancer Susceptibility 19 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 19 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1245 2 3
  • LINC01245 3
  • CARLo-6 3

External Ids for CASC19 Gene

Previous HGNC Symbols for CASC19 Gene

  • LINC01245

Previous GeneCards Identifiers for CASC19 Gene

  • GC00U935141

Summaries for CASC19 Gene

GeneCards Summary for CASC19 Gene

CASC19 (Cancer Susceptibility 19 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC19 Gene

Genomics for CASC19 Gene

Regulatory Elements for CASC19 Gene

Enhancers for CASC19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G127195 1.7 FANTOM5 Ensembl ENCODE dbSUPER 7.3 +6.2 6189 3.5 HDGF TBP PKNOX1 TBL1XR1 ZBTB40 EGR1 CBX5 ZNF143 RCOR1 RELB CASC19 GC08P127149
GH08G127183 1.6 FANTOM5 ENCODE dbSUPER 6.2 +18.5 18527 1.4 HDGF PKNOX1 FOXA2 ATF1 MLX DMAP1 ZNF48 YY1 CBX5 FOS CASC19 GC08P127149
GH08G127186 1.1 ENCODE dbSUPER 7.7 +14.7 14726 4.1 TBP PKNOX1 TBL1XR1 NFRKB YBX1 ZBTB40 ZNF207 RELB ETV6 IKZF2 CASC19 GC08P127149
GH08G127168 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.9 +33.3 33301 2.9 HDAC1 HDGF TCF12 ZNF766 GATA2 ETV6 FOS IKZF2 JUNB CEBPB CASC19 GC08P127149
GH08G127178 1.2 ENCODE dbSUPER 5.9 +23.3 23267 2.8 HDGF TBP ATF1 PKNOX1 TBL1XR1 SIN3A YBX1 RAD21 ELK1 CBX5 CASC19 GC08P127149
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC19 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC19 Gene

Chromosome:
8
Start:
127,185,635 bp from pter
End:
127,203,222 bp from pter
Size:
17,588 bases
Orientation:
Minus strand

Genomic View for CASC19 Gene

Genes around CASC19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC19 Gene

Proteins for CASC19 Gene

Post-translational modifications for CASC19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC19 Gene

Domains & Families for CASC19 Gene

Gene Families for CASC19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC19 Gene

Function for CASC19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC19 Gene

Localization for CASC19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC19 Gene

Pathways & Interactions for CASC19 Gene

SuperPathways for CASC19 Gene

No Data Available

Interacting Proteins for CASC19 Gene

Gene Ontology (GO) - Biological Process for CASC19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC19 Gene

Drugs & Compounds for CASC19 Gene

No Compound Related Data Available

Transcripts for CASC19 Gene

mRNA/cDNA for CASC19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC19 Gene

No ASD Table

Relevant External Links for CASC19 Gene

GeneLoc Exon Structure for
CASC19
ECgene alternative splicing isoforms for
CASC19

Expression for CASC19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC19 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC19 Gene:

CASC19
genes like me logo Genes that share expression patterns with CASC19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC19 Gene

Orthologs for CASC19 Gene

Evolution for CASC19 Gene

ENSEMBL:
Gene Tree for CASC19 (if available)
TreeFam:
Gene Tree for CASC19 (if available)

No data available for Orthologs for CASC19 Gene

Paralogs for CASC19 Gene

No data available for Paralogs for CASC19 Gene

Variants for CASC19 Gene

Sequence variations from dbSNP and Humsavar for CASC19 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000352646 -- 127,198,272(+) TGCAT(A/G)GTATA upstream-variant-2KB
rs1000467296 -- 127,195,362(+) TCTCA(A/G)TGCTC intron-variant
rs1000474225 -- 127,191,701(+) CTCTT(A/T)ACTGG intron-variant
rs1000490551 -- 127,191,494(+) ACTTC(C/T)CTTTT intron-variant
rs1000535941 -- 127,190,739(+) CAAAT(-/AAAA)AAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC19 Gene

Variant ID Type Subtype PubMed ID
esv3303525 CNV mobile element insertion 20981092
esv3343374 CNV insertion 20981092
nsv499795 OTHER inversion 21111241
nsv508525 CNV deletion 20534489
nsv7419 OTHER inversion 18451855
nsv831457 CNV gain 17160897

Relevant External Links for CASC19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC19 Gene

Disorders for CASC19 Gene

Relevant External Links for CASC19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC19

No disorders were found for CASC19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC19 Gene

Publications for CASC19 Gene

  1. Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3 64

Products for CASC19 Gene

Sources for CASC19 Gene

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