Aliases for CASC19 Gene
Subcategory (RNA class) for CASC19 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for CASC19 Gene
External Ids for CASC19 Gene
- HGNC: 49476
- Entrez Gene: 103021165
- Ensembl: ENSG00000254166
Previous HGNC Symbols for CASC19 Gene
- LINC01245
Previous GeneCards Identifiers for CASC19 Gene
- GC00U935141
Summaries for CASC19 Gene
GeneCards Summary for CASC19 Gene
CASC19 (Cancer Susceptibility 19 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC19 Gene
Genomics for CASC19 Gene
Regulatory Elements for CASC19 Gene
Enhancers for CASC19 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH08G127195 | 1.7 | FANTOM5 Ensembl ENCODE dbSUPER | 7.3 | +6.2 | 6189 | 3.5 | HDGF TBP PKNOX1 TBL1XR1 ZBTB40 EGR1 CBX5 ZNF143 RCOR1 RELB | CASC19 GC08P127149 |
| GH08G127183 | 1.6 | FANTOM5 ENCODE dbSUPER | 6.2 | +18.5 | 18527 | 1.4 | HDGF PKNOX1 FOXA2 ATF1 MLX DMAP1 ZNF48 YY1 CBX5 FOS | CASC19 GC08P127149 |
| GH08G127186 | 1.1 | ENCODE dbSUPER | 7.7 | +14.7 | 14726 | 4.1 | TBP PKNOX1 TBL1XR1 NFRKB YBX1 ZBTB40 ZNF207 RELB ETV6 IKZF2 | CASC19 GC08P127149 |
| GH08G127168 | 1.6 | FANTOM5 Ensembl ENCODE dbSUPER | 4.9 | +33.3 | 33301 | 2.9 | HDAC1 HDGF TCF12 ZNF766 GATA2 ETV6 FOS IKZF2 JUNB CEBPB | CASC19 GC08P127149 |
| GH08G127178 | 1.2 | ENCODE dbSUPER | 5.9 | +23.3 | 23267 | 2.8 | HDGF TBP ATF1 PKNOX1 TBL1XR1 SIN3A YBX1 RAD21 ELK1 CBX5 | CASC19 GC08P127149 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CASC19 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CASC19 Gene
- Chromosome:
- 8
- Start:
- 127,185,635 bp from pter
- End:
- 127,203,222 bp from pter
- Size:
- 17,588 bases
- Orientation:
- Minus strand
Genomic View for CASC19 Gene
Genes around CASC19 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q24.21 by Ensembl
- 8q24.21 by Entrez Gene
- 8q24.21 by HGNC
CASC19 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CASC19 Gene
Proteins for CASC19 Gene
Post-translational modifications for CASC19 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for CASC19
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC19
- Origene Custom Protein Services for CASC19
- Search GeneTex for Proteins for CASC19
Assay Products
No data available for DME Specific Peptides for CASC19 Gene
Domains & Families for CASC19 Gene
Gene Families for CASC19 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC19 Gene
Function for CASC19 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASC19
-
- Search ViGene Biosciences for CASC19
CRISPR Products
- Browse CRISPR knockouts for CASC19
miRNA Products
- Search ViGene Biosciences for CASC19
Inhibitory RNA Products
- Search ViGene Biosciences for CASC19
Clone Products
- GenScript: Custom all cDNA clones Services for CASC19
- VectorBuilder custom plasmid, inducible vectors for CASC19
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC19
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CASC19
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC19 Gene
Localization for CASC19 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC19 Gene
Transcripts for CASC19 Gene
mRNA/cDNA for CASC19 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for CASC19
miRNA Products
- Search ViGene Biosciences for CASC19
Inhibitory RNA Products
- Search ViGene Biosciences for CASC19
Clone Products
- GenScript: Custom all cDNA clones Services for CASC19
- VectorBuilder custom plasmid, inducible vectors for CASC19
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC19
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CASC19 Gene
NURSA nuclear receptor signaling pathways regulating expression of CASC19 Gene:
CASC19Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC19 Gene
Orthologs for CASC19 Gene
No data available for Orthologs for CASC19 Gene
Paralogs for CASC19 Gene
No data available for Paralogs for CASC19 Gene
Variants for CASC19 Gene
| SNP ID | Clin | Chr 08 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000352646 | -- | 127,198,272(+) | TGCAT(A/G)GTATA | upstream-variant-2KB | |
| rs1000467296 | -- | 127,195,362(+) | TCTCA(A/G)TGCTC | intron-variant | |
| rs1000474225 | -- | 127,191,701(+) | CTCTT(A/T)ACTGG | intron-variant | |
| rs1000490551 | -- | 127,191,494(+) | ACTTC(C/T)CTTTT | intron-variant | |
| rs1000535941 | -- | 127,190,739(+) | CAAAT(-/AAAA)AAATA | intron-variant |
Relevant External Links for CASC19 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CASC19
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC19 Gene
Disorders for CASC19 Gene
Relevant External Links for CASC19
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CASC19
No disorders were found for CASC19 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC19 Gene
Publications for CASC19 Gene
- Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3 64
Products for CASC19 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC19
- Origene Custom Protein Services for CASC19
- Browse OriGene Inhibitory RNA Products For CASC19
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CASC19
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CASC19
- GenScript: Custom all cDNA clones Services for CASC19
- GenScript Custom Purified and Recombinant Proteins Services for CASC19
- GenScript Custom Assay Services for CASC19
- GenScript Custom overexpressing Cell Line Services for CASC19
- Browse GenScript CRISPR for CASC19
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CASC19
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASC19
- VectorBuilder custom plasmid, inducible vectors for CASC19
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC19
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CASC19 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer