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CASC18 Gene(RNA Gene)

Cancer Susceptibility 18 (Non-Protein Coding)

GCID:
GC12P105704
GIFtS:
16
Genes Participants
UDN Logo

Aliases for CASC18 Gene

Subcategory (RNA class) for CASC18 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC18 Gene

  • Cancer Susceptibility 18 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 18 (Non-Protein Coding) 2

External Ids for CASC18 Gene

Previous GeneCards Identifiers for CASC18 Gene

  • GC12P106099

Summaries for CASC18 Gene

GeneCards Summary for CASC18 Gene

CASC18 (Cancer Susceptibility 18 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC18 Gene

Genomics for CASC18 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CASC18 Gene

Enhancers for CASC18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G105409 1.4 Ensembl ENCODE dbSUPER 6.8 -294.2 -294175 2.0 FOXA2 NFIB KLF17 FEZF1 ZNF302 GATA2 FOS KLF7 YY2 OVOL3 APPL2 CASC18 LOC105369955 GC12M105372
GH12G105382 0.9 Ensembl ENCODE 4.3 -321.0 -321043 1.3 CTCF PKNOX1 ZNF654 ZNF362 TRIM22 ZNF384 REST RAD21 DIDO1 SMC3 C12orf75 APPL2 CASC18 GC12M105372 LOC105369955
GH12G105368 0.5 ENCODE 5.2 -335.9 -335936 0.2 HDAC2 TEAD4 KDM1A ZBTB40 CASC18 LOC105369957 KCCAT198
GH12G105369 0.5 ENCODE 5.2 -335.0 -335006 0.2 CTCF SMC3 RAD21 C12orf75 CASC18 LOC105369957 KCCAT198
GH12G105705 1.5 Ensembl ENCODE dbSUPER 0.7 +2.2 2224 2.5 FOXA2 ATF1 FEZF1 ZNF2 ZNF143 FOS ZNF263 YY2 REST MIER2 CASC18 LOC105369959
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC18 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC18 Gene

Chromosome:
12
Start:
105,704,203 bp from pter
End:
105,744,063 bp from pter
Size:
39,861 bases
Orientation:
Plus strand

Genomic View for CASC18 Gene

Genes around CASC18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC18 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CASC18 Gene

Proteins for CASC18 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CASC18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC18 Gene

Domains & Families for CASC18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC18 Gene

Function for CASC18 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC18 Gene

Localization for CASC18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC18 Gene

Pathways & Interactions for CASC18 Gene

SuperPathways for CASC18 Gene

PathCards logo More details on SuperPathways for CASC18
No Data Available

Interacting Proteins for CASC18 Gene

Gene Ontology (GO) - Biological Process for CASC18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC18 Gene

Drugs & Compounds for CASC18 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CASC18 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CASC18 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CASC18 Gene

No ASD Table

Relevant External Links for CASC18 Gene

GeneLoc Exon Structure for
CASC18
ECgene alternative splicing isoforms for
CASC18

Expression for CASC18 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC18 Gene

mRNA expression in normal human tissues for CASC18 Gene
mRNA expression by GTEx for CASC18 Gene

mRNA differential expression in normal tissues according to GTEx for CASC18 Gene

This gene is overexpressed in Artery - Aorta (x7.5), Artery - Coronary (x4.4), and Artery - Tibial (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of CASC18 Gene:

CASC18
genes like me logo Genes that share expression patterns with CASC18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC18 Gene

Orthologs for CASC18 Gene

Evolution for CASC18 Gene

ENSEMBL:
Gene Tree for CASC18 (if available)
TreeFam:
Gene Tree for CASC18 (if available)

No data available for Orthologs for CASC18 Gene

Paralogs for CASC18 Gene

No data available for Paralogs for CASC18 Gene

Variants for CASC18 Gene

Sequence variations from dbSNP and Humsavar for CASC18 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000008277 -- 105,729,110(+) GAATT(G/T)GGCTG intron-variant
rs1000171495 -- 105,726,252(+) AACTC(A/G)GGAGG intron-variant
rs1000196504 -- 105,716,608(+) AGAGA(A/G)TTTGT intron-variant
rs1000229034 -- 105,716,416(+) ACATT(G/T)TCCTA intron-variant
rs1000357920 -- 105,735,662(+) GGCAA(C/G)AGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC18 Gene

Variant ID Type Subtype PubMed ID
dgv1551n100 CNV gain 25217958
nsv1039068 CNV gain 25217958
nsv476086 CNV novel sequence insertion 20440878

Relevant External Links for CASC18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC18 Gene

Disorders for CASC18 Gene

Relevant External Links for CASC18

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC18

No disorders were found for CASC18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC18 Gene

Publications for CASC18 Gene

  1. Introduction of novel splice variants for CASC18 gene and its relation to the neural differentiation. (PMID: 27956168) Mehravar M. … Soltani B.M. (Gene 2017) 3 64
  2. APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study. (PMID: 23419831) Ramanan V.K. … Saykin A.J. (Mol. Psychiatry 2013) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CASC18 Gene

Sources for CASC18 Gene

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