Aliases for CASC17 Gene
Subcategory (RNA class) for CASC17 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for CASC17 Gene
External Ids for CASC17 Gene
- HGNC: 43911
- Entrez Gene: 101928165
- Ensembl: ENSG00000260785
Previous GeneCards Identifiers for CASC17 Gene
- GC17M069094
Summaries for CASC17 Gene
GeneCards Summary for CASC17 Gene
CASC17 (Cancer Susceptibility 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CASC17 include Prostate Cancer Susceptibility.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC17 Gene
Genomics for CASC17 Gene
Regulatory Elements for CASC17 Gene
Enhancers for CASC17 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH17G071187 | 0.8 | Ensembl ENCODE | 0.4 | +13.4 | 13372 | 3.0 | JUND ZNF10 CREB1 FOS MAFK NFE2L2 | GC17M071183 CASC17 |
| GH17G071207 | 0.6 | ENCODE | 0.4 | -6.2 | -6239 | 1.7 | ZNF664 ZNF146 SMARCC1 JUND ZNF280D ZMYM3 CEBPB FOS ATF2 | CASC17 GC17M071251 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CASC17 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CASC17 Gene
- Chromosome:
- 17
- Start:
- 71,097,774 bp from pter
- End:
- 71,202,179 bp from pter
- Size:
- 104,406 bases
- Orientation:
- Minus strand
Genomic View for CASC17 Gene
Genes around CASC17 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q24.3 by Ensembl
- 17q24.3 by Entrez Gene
- 17q24.3 by HGNC
CASC17 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CASC17 Gene
Proteins for CASC17 Gene
Post-translational modifications for CASC17 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for CASC17
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC17
- Origene Custom Protein Services for CASC17
- Search GeneTex for Proteins for CASC17
Assay Products
No data available for DME Specific Peptides for CASC17 Gene
Domains & Families for CASC17 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC17 Gene
Function for CASC17 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASC17
-
- Search ViGene Biosciences for CASC17
CRISPR Products
- Browse CRISPR knockouts for CASC17
miRNA Products
- Search ViGene Biosciences for CASC17
Inhibitory RNA Products
- Search ViGene Biosciences for CASC17
Clone Products
- GenScript: Custom all cDNA clones Services for CASC17
- VectorBuilder custom plasmid, inducible vectors for CASC17
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC17
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CASC17
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC17 Gene
Localization for CASC17 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC17 Gene
Transcripts for CASC17 Gene
mRNA/cDNA for CASC17 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for CASC17
miRNA Products
- Search ViGene Biosciences for CASC17
Inhibitory RNA Products
- Search ViGene Biosciences for CASC17
Clone Products
- GenScript: Custom all cDNA clones Services for CASC17
- VectorBuilder custom plasmid, inducible vectors for CASC17
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC17
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CASC17 Gene
mRNA differential expression in normal tissues according to GTEx for CASC17 Gene
This gene is overexpressed in Testis (x52.5).
NURSA nuclear receptor signaling pathways regulating expression of CASC17 Gene:
CASC17
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC17 Gene
Orthologs for CASC17 Gene
No data available for Orthologs for CASC17 Gene
Paralogs for CASC17 Gene
No data available for Paralogs for CASC17 Gene
Variants for CASC17 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000024314 | -- | 71,120,097(+) | GAGAA(A/G)AATGG | intron-variant | |
| rs1000049542 | -- | 71,142,208(+) | AACTC(-/AG)AGAGA | intron-variant | |
| rs1000108006 | -- | 71,178,987(+) | GGCGG(A/G)TCGCA | intron-variant | |
| rs1000120844 | -- | 71,109,483(+) | TACAA(G/T)GTGAT | intron-variant | |
| rs1000148091 | -- | 71,175,499(+) | AGCCA(C/T)GTAAG | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3279n100 | CNV | gain | 25217958 |
| esv24284 | CNV | gain | 19812545 |
| esv2668788 | CNV | deletion | 23128226 |
| esv2716169 | CNV | deletion | 23290073 |
| esv3641169 | CNV | loss | 21293372 |
| esv3641170 | CNV | loss | 21293372 |
| nsv1062586 | CNV | loss | 25217958 |
| nsv1118599 | CNV | duplication | 24896259 |
| nsv516815 | CNV | loss | 19592680 |
| nsv526073 | CNV | loss | 19592680 |
| nsv575949 | CNV | loss | 21841781 |
Relevant External Links for CASC17 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CASC17
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC17 Gene
Disorders for CASC17 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| prostate cancer susceptibility |
|
|
Search CASC17 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for CASC17
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CASC17
No data available for UniProtKB/Swiss-Prot and Genatlas for CASC17 Gene
Publications for CASC17 Gene
- Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe D.W. … Martin R.M. (Cancer Epidemiol. Biomarkers Prev. 2014) 3 64
- Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock D.B. … London S.J. (PLoS Genet. 2012) 3 64
- Genome-wide association study identifies new prostate cancer susceptibility loci. (PMID: 21743057) Schumacher F.R. … Kraft P. (Hum. Mol. Genet. 2011) 3 64
- Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. (PMID: 19767753) Eeles R.A. … Easton D.F. (Nat. Genet. 2009) 3 64
- Multiple newly identified loci associated with prostate cancer susceptibility. (PMID: 18264097) Eeles R.A. … Easton D.F. (Nat. Genet. 2008) 3 64
Products for CASC17 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
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- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC17
- Origene Custom Protein Services for CASC17
- Browse OriGene Inhibitory RNA Products For CASC17
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CASC17
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CASC17
- GenScript: Custom all cDNA clones Services for CASC17
- GenScript Custom Purified and Recombinant Proteins Services for CASC17
- GenScript Custom Assay Services for CASC17
- GenScript Custom overexpressing Cell Line Services for CASC17
- Browse GenScript CRISPR for CASC17
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CASC17
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for CASC17
- VectorBuilder custom plasmid, inducible vectors for CASC17
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CASC17
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CASC17 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer