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Aliases for CASC17 Gene

Subcategory (RNA class) for CASC17 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CASC17 Gene

  • Cancer Susceptibility Candidate 17 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 600 2 3
  • LINC00600 3

External Ids for CASC17 Gene

ORGUL Members for CASC17 Gene

Previous GeneCards Identifiers for CASC17 Gene

  • GC17M069094

Summaries for CASC17 Gene

GeneCards Summary for CASC17 Gene

CASC17 (Cancer Susceptibility Candidate 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC17 Gene

Genomics for CASC17 Gene

Genomic Location for CASC17 Gene

Start:
71,097,774 bp from pter
End:
71,202,179 bp from pter
Size:
104,406 bases
Orientation:
Minus strand

Genomic View for CASC17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CASC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC17 Gene

No data available for Regulatory Elements for CASC17 Gene

Proteins for CASC17 Gene

Post-translational modifications for CASC17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC17 Gene

Domains for CASC17 Gene

Gene Families for CASC17 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC17 Gene

Function for CASC17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CASC17 Gene

Localization for CASC17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC17 Gene

Pathways for CASC17 Gene

SuperPathways for CASC17 Gene

No Data Available

Interacting Proteins for CASC17 Gene

Gene Ontology (GO) - Biological Process for CASC17 Gene

None

No data available for Pathways by source for CASC17 Gene

Transcripts for CASC17 Gene

mRNA/cDNA for CASC17 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC17 Gene

No ASD Table

Relevant External Links for CASC17 Gene

GeneLoc Exon Structure for
CASC17
ECgene alternative splicing isoforms for
CASC17

Expression for CASC17 Gene

mRNA expression in normal human tissues for CASC17 Gene

mRNA differential expression in normal tissues according to GTEx for CASC17 Gene

This gene is overexpressed in Testis (52.5).
genes like me logo Genes that share expressions with CASC17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for CASC17 Gene

Orthologs for CASC17 Gene

Evolution for CASC17 Gene

ENSEMBL:
Gene Tree for CASC17 (if available)
TreeFam:
Gene Tree for CASC17 (if available)

No data available for Orthologs for CASC17 Gene

Paralogs for CASC17 Gene

No data available for Paralogs for CASC17 Gene

Variants for CASC17 Gene

Sequence variations from dbSNP and Humsavar for CASC17 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs719615 -- 71,153,769(-) TCCCA(C/T)AAAGC intron-variant
rs723338 -- 71,149,272(-) GACAT(C/T)AGGTG intron-variant
rs740408 -- 71,184,955(+) GCCTG(A/C)AACCT intron-variant
rs758106 -- 71,184,862(+) CCTTC(C/T)CAATC intron-variant
rs767203 -- 71,203,138(-) GAGTT(A/C/T)TGGAG upstream-variant-2KB

Relevant External Links for CASC17 Gene

HapMap Linkage Disequilibrium report
CASC17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CASC17 Gene

Disorders for CASC17 Gene

No disorders were found for CASC17 Gene.

No data available for UniProtKB/Swiss-Prot for CASC17 Gene

Publications for CASC17 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes. (PMID: 17603485) Gudmundsson J. … Stefansson K. (Nat. Genet. 2007) 3
  3. Multiple newly identified loci associated with prostate cancer susceptibility. (PMID: 18264097) Eeles R.A. … Easton D.F. (Nat. Genet. 2008) 3
  4. Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. (PMID: 19767753) Eeles R.A. … Easton D.F. (Nat. Genet. 2009) 3
  5. Genome-wide association study identifies new prostate cancer susceptibility loci. (PMID: 21743057) Schumacher F.R. … Kraft P. (Hum. Mol. Genet. 2011) 3

Products for CASC17 Gene

Sources for CASC17 Gene

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