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Aliases for CASC17 Gene

Subcategory (RNA class) for CASC17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC17 Gene

  • Cancer Susceptibility Candidate 17 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 600 2 3
  • LINC00600 3

External Ids for CASC17 Gene

Previous GeneCards Identifiers for CASC17 Gene

  • GC17M069094

Summaries for CASC17 Gene

GeneCards Summary for CASC17 Gene

CASC17 (Cancer Susceptibility Candidate 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CASC17 include Prostate Cancer Susceptibility.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC17 Gene

Genomics for CASC17 Gene

Regulatory Elements for CASC17 Gene

Enhancers for CASC17 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CASC17 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC17 Gene

Chromosome:
17
Start:
71,097,774 bp from pter
End:
71,202,179 bp from pter
Size:
104,406 bases
Orientation:
Minus strand

Genomic View for CASC17 Gene

Genes around CASC17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC17 Gene

Proteins for CASC17 Gene

Post-translational modifications for CASC17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC17 Gene

Domains & Families for CASC17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC17 Gene

Function for CASC17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC17 Gene

Localization for CASC17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC17 Gene

Pathways & Interactions for CASC17 Gene

SuperPathways for CASC17 Gene

No Data Available

Interacting Proteins for CASC17 Gene

Gene Ontology (GO) - Biological Process for CASC17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC17 Gene

Drugs & Compounds for CASC17 Gene

No Compound Related Data Available

Transcripts for CASC17 Gene

mRNA/cDNA for CASC17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC17 Gene

No ASD Table

Relevant External Links for CASC17 Gene

GeneLoc Exon Structure for
CASC17
ECgene alternative splicing isoforms for
CASC17

Expression for CASC17 Gene

mRNA expression in normal human tissues for CASC17 Gene

mRNA differential expression in normal tissues according to GTEx for CASC17 Gene

This gene is overexpressed in Testis (x52.5).
genes like me logo Genes that share expression patterns with CASC17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CASC17 Gene

Orthologs for CASC17 Gene

Evolution for CASC17 Gene

ENSEMBL:
Gene Tree for CASC17 (if available)
TreeFam:
Gene Tree for CASC17 (if available)

No data available for Orthologs for CASC17 Gene

Paralogs for CASC17 Gene

No data available for Paralogs for CASC17 Gene

Variants for CASC17 Gene

Sequence variations from dbSNP and Humsavar for CASC17 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs956218 -- 71,149,195(-) AACCC(C/T)GATAT intron-variant
rs956219 -- 71,149,566(-) CAACA(C/T)AGAAC intron-variant
rs984434 -- 71,111,986(+) ATATA(C/T)TCATT intron-variant
rs988469 -- 71,108,477(+) ccctc(C/G)cactt intron-variant
rs991429 -- 71,113,632(+) AGGCA(A/G)CTGGA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CASC17 Gene

Disorders for CASC17 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CASC17 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer susceptibility
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CASC17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC17
genes like me logo Genes that share disorders with CASC17: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CASC17 Gene

Publications for CASC17 Gene

  1. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe D.W. … Martin R.M. (Cancer Epidemiol. Biomarkers Prev. 2014) 3 67
  2. Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock D.B. … London S.J. (PLoS Genet. 2012) 3
  3. Genome-wide association study identifies new prostate cancer susceptibility loci. (PMID: 21743057) Schumacher F.R. … Kraft P. (Hum. Mol. Genet. 2011) 3
  4. Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. (PMID: 19767753) Eeles R.A. … Easton D.F. (Nat. Genet. 2009) 3
  5. Multiple newly identified loci associated with prostate cancer susceptibility. (PMID: 18264097) Eeles R.A. … Easton D.F. (Nat. Genet. 2008) 3

Products for CASC17 Gene

Sources for CASC17 Gene

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