Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CASC17 Gene

Subcategory (RNA class) for CASC17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC17 Gene

  • Cancer Susceptibility Candidate 17 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 600 2 3
  • LINC00600 3

External Ids for CASC17 Gene

Previous GeneCards Identifiers for CASC17 Gene

  • GC17M069094

Summaries for CASC17 Gene

GeneCards Summary for CASC17 Gene

CASC17 (Cancer Susceptibility Candidate 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CASC17 include Prostate Cancer Susceptibility.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC17 Gene

Genomics for CASC17 Gene

Regulatory Elements for CASC17 Gene

Enhancers for CASC17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F071437 1.6 FANTOM5 Ensembl ENCODE 16.2 -237.7 -237726 3.9 PKNOX1 ZNF493 SIN3A FEZF1 ZNF2 GLIS2 ZNF302 KLF7 FOS ZNF263 ENSG00000225818 MYL6P5 CASC17 GC17M071497 RNU7-155P
GH17F070295 1.4 FANTOM5 Ensembl 16.2 +906.8 906750 0.9 HDGF CREB3L1 SIN3A FEZF1 ZNF2 YY1 ZNF207 SP3 SP5 JUNB KCNJ2 CASC17 SNRPGP4 GC17P070294 GC17M070291
GH17F071631 1.2 Ensembl ENCODE 16.2 -430.9 -430947 3.9 INSM2 SIN3A FEZF1 GLI4 ZEB1 ZNF366 FOS ZNF391 ZNF362 ZNF280D MYL6P5 ENSG00000225818 CASC17 GC17M071667
GH17F070296 1.1 FANTOM5 16.2 +906.0 906026 0.4 HDGF ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS SP3 KCNJ2 CASC17 GC17P070294 GC17M070291
GH17F071431 0.6 ENCODE 16.2 -230.8 -230835 2.1 ZNF121 ATF3 JUNB ZNF645 FOS ATF2 ZBTB20 ENSG00000225818 MYL6P5 CASC17 GC17M071497 RNU7-155P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CASC17 on UCSC Golden Path with GeneCards custom track

Genomic Location for CASC17 Gene

Chromosome:
17
Start:
71,097,774 bp from pter
End:
71,202,179 bp from pter
Size:
104,406 bases
Orientation:
Minus strand

Genomic View for CASC17 Gene

Genes around CASC17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC17 Gene

Proteins for CASC17 Gene

Post-translational modifications for CASC17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC17 Gene

Domains & Families for CASC17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC17 Gene

Function for CASC17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC17 Gene

Localization for CASC17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC17 Gene

Pathways & Interactions for CASC17 Gene

SuperPathways for CASC17 Gene

No Data Available

Interacting Proteins for CASC17 Gene

Gene Ontology (GO) - Biological Process for CASC17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC17 Gene

Transcripts for CASC17 Gene

mRNA/cDNA for CASC17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC17 Gene

No ASD Table

Relevant External Links for CASC17 Gene

GeneLoc Exon Structure for
CASC17
ECgene alternative splicing isoforms for
CASC17

Expression for CASC17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CASC17 Gene

mRNA differential expression in normal tissues according to GTEx for CASC17 Gene

This gene is overexpressed in Testis (x52.5).

NURSA nuclear receptor signaling pathways regulating expression of CASC17 Gene:

CASC17
genes like me logo Genes that share expression patterns with CASC17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CASC17 Gene

Orthologs for CASC17 Gene

Evolution for CASC17 Gene

ENSEMBL:
Gene Tree for CASC17 (if available)
TreeFam:
Gene Tree for CASC17 (if available)

No data available for Orthologs for CASC17 Gene

Paralogs for CASC17 Gene

No data available for Paralogs for CASC17 Gene

Variants for CASC17 Gene

Sequence variations from dbSNP and Humsavar for CASC17 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1008348 -- 71,195,175(+) AATAT(A/G)AGTAG intron-variant
rs1011729 -- 71,191,446(+) GTTGA(C/T)TGCTT intron-variant
rs1011730 -- 71,191,604(+) TTAAT(A/G)TCCTA intron-variant
rs1013999 -- 71,125,794(-) TACAC(A/G)AGATT intron-variant
rs1014000 -- 71,125,704(-) TCCCC(C/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CASC17 Gene

Variant ID Type Subtype PubMed ID
nsv575949 CNV loss 21841781
nsv526073 CNV loss 19592680
nsv516815 CNV loss 19592680
nsv1118599 CNV duplication 24896259
nsv1062586 CNV loss 25217958
esv3641170 CNV loss 21293372
esv3641169 CNV loss 21293372
esv2716169 CNV deletion 23290073
esv2668788 CNV deletion 23128226
esv24284 CNV gain 19812545
dgv3279n100 CNV gain 25217958

Relevant External Links for CASC17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC17 Gene

Disorders for CASC17 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CASC17 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer susceptibility
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CASC17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC17
genes like me logo Genes that share disorders with CASC17: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CASC17 Gene

Publications for CASC17 Gene

  1. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe D.W. … Martin R.M. (Cancer Epidemiol. Biomarkers Prev. 2014) 3 64
  2. Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock D.B. … London S.J. (PLoS Genet. 2012) 3 64
  3. Genome-wide association study identifies new prostate cancer susceptibility loci. (PMID: 21743057) Schumacher F.R. … Kraft P. (Hum. Mol. Genet. 2011) 3 64
  4. Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. (PMID: 19767753) Eeles R.A. … Easton D.F. (Nat. Genet. 2009) 3 64
  5. Multiple newly identified loci associated with prostate cancer susceptibility. (PMID: 18264097) Eeles R.A. … Easton D.F. (Nat. Genet. 2008) 3 64

Products for CASC17 Gene

Sources for CASC17 Gene

Content
Loading form....