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Aliases for CASC16 Gene

Subcategory (RNA class) for CASC16 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC16 Gene

  • Cancer Susceptibility Candidate 16 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 918 2 3
  • LINC00918 3

External Ids for CASC16 Gene

Previous HGNC Symbols for CASC16 Gene

  • LINC00918

Summaries for CASC16 Gene

GeneCards Summary for CASC16 Gene

CASC16 (Cancer Susceptibility Candidate 16 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC16 Gene

Genomics for CASC16 Gene

Genomic Location for CASC16 Gene

Chromosome:
16
Start:
52,552,087 bp from pter
End:
52,652,105 bp from pter
Size:
100,019 bases
Orientation:
Minus strand

Genomic View for CASC16 Gene

Genes around CASC16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC16 Gene

No data available for Regulatory Elements for CASC16 Gene

Proteins for CASC16 Gene

Post-translational modifications for CASC16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC16 Gene

Domains & Families for CASC16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC16 Gene

Function for CASC16 Gene

Phenotypes for CASC16 Gene

GenomeRNAi human phenotypes for CASC16:
genes like me logo Genes that share phenotypes with CASC16: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC16 Gene

Localization for CASC16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC16 Gene

Pathways & Interactions for CASC16 Gene

SuperPathways for CASC16 Gene

No Data Available

Interacting Proteins for CASC16 Gene

Gene Ontology (GO) - Biological Process for CASC16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC16 Gene

Drugs & Compounds for CASC16 Gene

No Compound Related Data Available

Transcripts for CASC16 Gene

mRNA/cDNA for CASC16 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC16 Gene

No ASD Table

Relevant External Links for CASC16 Gene

GeneLoc Exon Structure for
CASC16
ECgene alternative splicing isoforms for
CASC16

Expression for CASC16 Gene

mRNA expression in normal human tissues for CASC16 Gene

mRNA differential expression in normal tissues according to GTEx for CASC16 Gene

This gene is overexpressed in Testis (x48.8).
genes like me logo Genes that share expression patterns with CASC16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CASC16 Gene

Orthologs for CASC16 Gene

Evolution for CASC16 Gene

ENSEMBL:
Gene Tree for CASC16 (if available)
TreeFam:
Gene Tree for CASC16 (if available)

No data available for Orthologs for CASC16 Gene

Paralogs for CASC16 Gene

No data available for Paralogs for CASC16 Gene

Variants for CASC16 Gene

Sequence variations from dbSNP and Humsavar for CASC16 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs2335 -- 52,590,534(-) CTGAC(A/C)CAGGT intron-variant
rs3481 -- 52,571,184(+) GGTTA(A/G)ACTGT intron-variant
rs1109951 -- 52,578,132(+) CCACG(C/T)CTTAG intron-variant
rs3104758 -- 52,575,121(+) TTGAA(A/C)CTGGG intron-variant
rs3104759 -- 52,575,617(+) ATGCC(A/G)GTGAT intron-variant

Relevant External Links for CASC16 Gene

HapMap Linkage Disequilibrium report
CASC16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CASC16 Gene

Disorders for CASC16 Gene

Relevant External Links for CASC16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CASC16

No disorders were found for CASC16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC16 Gene

Publications for CASC16 Gene

  1. Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. (PMID: 25327703) Fejerman L. … Ziv E. (Nat Commun 2014) 3 67
  2. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PMID: 23535729) Michailidou K. … Easton D.F. (Nat. Genet. 2013) 3
  3. Genome-wide association study of breast cancer in the Japanese population. (PMID: 24143190) Low S.K. … Katagiri T. (PLoS ONE 2013) 3
  4. Genome-wide association studies identify four ER negative-specific breast cancer risk loci. (PMID: 23535733) Garcia-Closas M. … Kraft P. (Nat. Genet. 2013) 3
  5. Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk. (PMID: 23001122) Orr N. … Swerdlow A.J. (Nat. Genet. 2012) 3

Products for CASC16 Gene

Sources for CASC16 Gene

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