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Aliases for CASC16 Gene

Subcategory (RNA class) for CASC16 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CASC16 Gene

  • Cancer Susceptibility Candidate 16 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 918 2 3
  • LINC00918 3

External Ids for CASC16 Gene

ORGUL Members for CASC16 Gene

Previous Symbols for CASC16 Gene

  • LINC00918

Summaries for CASC16 Gene

GeneCards Summary for CASC16 Gene

CASC16 (Cancer Susceptibility Candidate 16 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC16 Gene

Genomics for CASC16 Gene

Genomic Location for CASC16 Gene

Start:
52,552,087 bp from pter
End:
52,652,105 bp from pter
Size:
100,019 bases
Orientation:
Minus strand

Genomic View for CASC16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CASC16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC16 Gene

No data available for Regulatory Elements for CASC16 Gene

Proteins for CASC16 Gene

Post-translational modifications for CASC16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC16 Gene

Domains for CASC16 Gene

Gene Families for CASC16 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with CASC16: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for CASC16 Gene

Function for CASC16 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CASC16 Gene

Localization for CASC16 Gene

No data available for Gene Ontology (GO) - Cellular Components for CASC16 Gene

Pathways for CASC16 Gene

SuperPathways for CASC16 Gene

No Data Available

Interacting Proteins for CASC16 Gene

Gene Ontology (GO) - Biological Process for CASC16 Gene

None

No data available for Pathways by source for CASC16 Gene

Transcripts for CASC16 Gene

mRNA/cDNA for CASC16 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC16 Gene

No ASD Table

Relevant External Links for CASC16 Gene

GeneLoc Exon Structure for
CASC16
ECgene alternative splicing isoforms for
CASC16

Expression for CASC16 Gene

mRNA expression in normal human tissues for CASC16 Gene

mRNA differential expression in normal tissues according to GTEx for CASC16 Gene

This gene is overexpressed in Testis (48.8).
genes like me logo Genes that share expressions with CASC16: view

Orthologs for CASC16 Gene

Evolution for CASC16 Gene

ENSEMBL:
Gene Tree for CASC16 (if available)
TreeFam:
Gene Tree for CASC16 (if available)

No data available for Orthologs for CASC16 Gene

Paralogs for CASC16 Gene

No data available for Paralogs for CASC16 Gene

Variants for CASC16 Gene

Sequence variations from dbSNP and Humsavar for CASC16 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs2335 -- 52,590,534(-) CTGAC(A/C)CAGGT intron-variant
rs3481 -- 52,571,184(+) GGTTA(A/G)ACTGT intron-variant
rs1109951 -- 52,578,132(+) CCACG(C/T)CTTAG intron-variant
rs1112135 -- 52,605,843(-) CACAG(A/G)GCTTT intron-variant
rs3104743 -- 52,563,380(+) AAGCA(C/G)GATGG intron-variant

Relevant External Links for CASC16 Gene

HapMap Linkage Disequilibrium report
CASC16

No data available for Structural Variations from Database of Genomic Variants (DGV) for CASC16 Gene

Disorders for CASC16 Gene

No disorders were found for CASC16 Gene.

No data available for UniProtKB/Swiss-Prot for CASC16 Gene

Publications for CASC16 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Genome-wide association study identifies novel breast cancer susceptibility loci. (PMID: 17529967) Easton D.F. … Ponder B.A. (Nature 2007) 3
  3. Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer. (PMID: 17529974) Stacey S.N. … Stefansson K. (Nat. Genet. 2007) 3
  4. Association between invasive ovarian cancer susceptibility and 11 best candidate SNPs from breast cancer genome-wide association study. (PMID: 19304784) Song H. … Pharoah P.D. (Hum. Mol. Genet. 2009) 3
  5. A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1). (PMID: 19330030) Thomas G. … Hunter D.J. (Nat. Genet. 2009) 3

Products for CASC16 Gene

Sources for CASC16 Gene

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