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Aliases for CASC15 Gene

Subcategory (RNA class) for CASC15 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CASC15 Gene

  • Cancer Susceptibility Candidate 15 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 340 2 3
  • LINC00340 3

External Ids for CASC15 Gene

Previous HGNC Symbols for CASC15 Gene

  • LINC00340

Summaries for CASC15 Gene

GeneCards Summary for CASC15 Gene

CASC15 (Cancer Susceptibility Candidate 15 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CASC15 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CASC15 Gene

Genomics for CASC15 Gene

Genomic Location for CASC15 Gene

Start:
21,664,772 bp from pter
End:
22,214,505 bp from pter
Size:
549,734 bases
Orientation:
Plus strand

Genomic View for CASC15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CASC15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC15 Gene

No data available for Regulatory Elements for CASC15 Gene

Proteins for CASC15 Gene

Post-translational modifications for CASC15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC15 Gene

Domains for CASC15 Gene

Gene Families for CASC15 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC15: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC15 Gene

Function for CASC15 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CASC15 Gene

Localization for CASC15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CASC15 Gene

Pathways for CASC15 Gene

SuperPathways for CASC15 Gene

No Data Available

Interacting Proteins for CASC15 Gene

Gene Ontology (GO) - Biological Process for CASC15 Gene

None

No data available for Pathways by source for CASC15 Gene

Transcripts for CASC15 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CASC15

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CASC15 Gene

No ASD Table

Relevant External Links for CASC15 Gene

GeneLoc Exon Structure for
CASC15
ECgene alternative splicing isoforms for
CASC15

Expression for CASC15 Gene

mRNA expression in normal human tissues for CASC15 Gene

genes like me logo Genes that share expressions with CASC15: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for CASC15 Gene

Orthologs for CASC15 Gene

Evolution for CASC15 Gene

ENSEMBL:
Gene Tree for CASC15 (if available)
TreeFam:
Gene Tree for CASC15 (if available)

No data available for Orthologs for CASC15 Gene

Paralogs for CASC15 Gene

No data available for Paralogs for CASC15 Gene

Variants for CASC15 Gene

Sequence variations from dbSNP and Humsavar for CASC15 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs2686 -- 22,133,254(+) CGAAG(C/T)GAAAA intron-variant
rs3406 -- 22,194,344(-) GACTT(A/T)CTCTC nc-transcript-variant
rs17491 -- 21,755,046(-) AGGAA(C/G)AGGGT intron-variant
rs169031 -- 22,066,123(-) TTAAT(G/T)ATAAC intron-variant
rs171900 -- 22,054,455(-) GATAC(A/G)GATGG intron-variant

Relevant External Links for CASC15 Gene

HapMap Linkage Disequilibrium report
CASC15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CASC15 Gene

Disorders for CASC15 Gene

No disorders were found for CASC15 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CASC15 Gene

Publications for CASC15 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. A third approach to gene prediction suggests thousands of additional human transcribed regions. (PMID: 16543943) Glusman G. … Smit A.F. (PLoS Comput. Biol. 2006) 3
  4. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris J.M. … Hakonarson H. (N. Engl. J. Med. 2008) 3
  5. Integrative genomics identifies LMO1 as a neuroblastoma oncogene. (PMID: 21124317) Wang K. … Maris J.M. (Nature 2011) 3

Products for CASC15 Gene

Sources for CASC15 Gene

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