Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CARMN Gene

Subcategory (RNA class) for CARMN Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CARMN Gene

  • Cardiac Mesoderm Enhancer-Associated Non-Coding RNA 2 3 5
  • MIR143 Host Gene (Non-Protein Coding) 2 3
  • Cardiac Mesoderm Enhancer-Associated Noncoding RNA 3
  • MIR143 Host Gene 2
  • MIR143HG 3
  • CARMEN 3

External Ids for CARMN Gene

Previous HGNC Symbols for CARMN Gene

  • MIR143HG

Summaries for CARMN Gene

GeneCards Summary for CARMN Gene

CARMN (Cardiac Mesoderm Enhancer-Associated Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CARMN Gene

Genomics for CARMN Gene

Regulatory Elements for CARMN Gene

Enhancers for CARMN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around CARMN on UCSC Golden Path with GeneCards custom track

Genomic Location for CARMN Gene

Chromosome:
5
Start:
149,406,689 bp from pter
End:
149,432,836 bp from pter
Size:
26,148 bases
Orientation:
Plus strand

Genomic View for CARMN Gene

Genes around CARMN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CARMN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CARMN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CARMN Gene

Proteins for CARMN Gene

Post-translational modifications for CARMN Gene

No Post-translational modifications

No data available for DME Specific Peptides for CARMN Gene

Domains & Families for CARMN Gene

Gene Families for CARMN Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CARMN: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CARMN Gene

Function for CARMN Gene

Phenotypes for CARMN Gene

GenomeRNAi human phenotypes for CARMN:
genes like me logo Genes that share phenotypes with CARMN: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CARMN Gene

Localization for CARMN Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CARMN Gene

Pathways & Interactions for CARMN Gene

SuperPathways for CARMN Gene

No Data Available

Interacting Proteins for CARMN Gene

Gene Ontology (GO) - Biological Process for CARMN Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CARMN Gene

Drugs & Compounds for CARMN Gene

No Compound Related Data Available

Transcripts for CARMN Gene

mRNA/cDNA for CARMN Gene

(10) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CARMN Gene

MIR143 host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CARMN Gene

No ASD Table

Relevant External Links for CARMN Gene

GeneLoc Exon Structure for
CARMN
ECgene alternative splicing isoforms for
CARMN

Expression for CARMN Gene

NURSA nuclear receptor signaling pathways regulating expression of CARMN Gene:

CARMN

SOURCE GeneReport for Unigene cluster for CARMN Gene:

Hs.744892
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CARMN Gene

Orthologs for CARMN Gene

Evolution for CARMN Gene

ENSEMBL:
Gene Tree for CARMN (if available)
TreeFam:
Gene Tree for CARMN (if available)

No data available for Orthologs for CARMN Gene

Paralogs for CARMN Gene

No data available for Paralogs for CARMN Gene

Variants for CARMN Gene

Sequence variations from dbSNP and Humsavar for CARMN Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs241282 -- 149,410,679(+) ATCAA(A/G)TTTAT intron-variant
rs1422815 -- 149,425,202(-) AAGGG(C/T)TGAGG intron-variant
rs353283 -- 149,415,609(+) CTCCA(A/G)GAGAT intron-variant
rs353284 -- 149,414,412(+) CAGAA(A/G)AGGTT intron-variant
rs353285 -- 149,413,630(+) AGGGG(C/T)AGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CARMN Gene

Variant ID Type Subtype PubMed ID
esv2668220 CNV deletion 23128226
nsv516607 CNV loss 19592680
nsv519878 CNV loss 19592680
nsv521406 CNV loss 19592680
nsv528923 CNV loss 19592680
nsv599948 CNV loss 21841781

Relevant External Links for CARMN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CARMN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CARMN Gene

Disorders for CARMN Gene

Relevant External Links for CARMN

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CARMN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CARMN

No disorders were found for CARMN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CARMN Gene

Publications for CARMN Gene

  1. CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis. (PMID: 26423156) Ounzain S. … Pedrazzini T. (J. Mol. Cell. Cardiol. 2015) 2 3 65
  2. miR-145 participates with TP53 in a death-promoting regulatory loop and targets estrogen receptor-alpha in human breast cancer cells. (PMID: 19730444) Spizzo R. … Calin G.A. (Cell Death Differ. 2010) 3 65
  3. Repression of the miR-143/145 cluster by oncogenic Ras initiates a tumor-promoting feed-forward pathway. (PMID: 21159816) Kent O.A. … Mendell J.T. (Genes Dev. 2010) 3 65
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for CARMN Gene

Sources for CARMN Gene

Content
Loading form....