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Aliases for CARD8-AS1 Gene

Subcategory (RNA class) for CARD8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CARD8-AS1 Gene

  • CARD8 Antisense RNA 1 2 3 5
  • CTC-241F20.3 3

External Ids for CARD8-AS1 Gene

Summaries for CARD8-AS1 Gene

GeneCards Summary for CARD8-AS1 Gene

CARD8-AS1 (CARD8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CARD8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CARD8-AS1 Gene

Genomics for CARD8-AS1 Gene

Regulatory Elements for CARD8-AS1 Gene

Enhancers for CARD8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H048253 1.7 FANTOM5 ENCODE dbSUPER 27.5 +1.8 1777 7 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 NOP53-AS1 KDELR1 BICRA CARD8-AS1 GRWD1 SNRNP70 SNORD23 NOP53 RPL18 PLA2G4C
GH19H048247 1.4 Ensembl ENCODE dbSUPER 27.3 -5.7 -5685 4 HDGF PKNOX1 RB1 BATF YY1 ZNF143 ZNF207 ATF7 ETV6 RUNX3 CARD8-AS1 GRWD1 NOP53-AS1 BICRA SNRNP70 RASIP1 KDELR1 PLA2G4C PIR59935 VN1R97P
GH19H048252 0.6 dbSUPER 21.3 -2.5 -2543 0 SMARCE1 NCOR1 SMARCA4 ADNP MLLT1 DPF2 CARD8-AS1 PLA2G4C VN1R97P
GH19H048243 1 Ensembl ENCODE dbSUPER 10.4 -10.9 -10945 2 JUN ELF1 SPI1 CARD8-AS1 CARD8 ZNF114 PLA2G4C PIR59935 GC19M048250 PIR40942
GH19H048319 1.4 ENCODE dbSUPER 6.4 +68.3 68267 8 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 YBX1 YY1 ZNF766 ZNF143 KDELR1 SNORD23 NOP53 RPL18 BICRA GRWD1 NOP53-AS1 TMEM143 CCDC114 SNRNP70
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CARD8-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CARD8-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000110675 225 1401 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 SLC30A9 ZNF766 ZNF143 ZNF207

Genomic Location for CARD8-AS1 Gene

Chromosome:
19
Start:
48,255,675 bp from pter
End:
48,258,199 bp from pter
Size:
2,525 bases
Orientation:
Plus strand

Genomic View for CARD8-AS1 Gene

Genes around CARD8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CARD8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CARD8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CARD8-AS1 Gene

Proteins for CARD8-AS1 Gene

Post-translational modifications for CARD8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CARD8-AS1 Gene

Domains & Families for CARD8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CARD8-AS1 Gene

Function for CARD8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CARD8-AS1 Gene

Localization for CARD8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CARD8-AS1 Gene

Pathways & Interactions for CARD8-AS1 Gene

SuperPathways for CARD8-AS1 Gene

No Data Available

Interacting Proteins for CARD8-AS1 Gene

Gene Ontology (GO) - Biological Process for CARD8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CARD8-AS1 Gene

Drugs & Compounds for CARD8-AS1 Gene

No Compound Related Data Available

Transcripts for CARD8-AS1 Gene

mRNA/cDNA for CARD8-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CARD8-AS1 Gene

No ASD Table

Relevant External Links for CARD8-AS1 Gene

GeneLoc Exon Structure for
CARD8-AS1
ECgene alternative splicing isoforms for
CARD8-AS1

Expression for CARD8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CARD8-AS1 Gene

genes like me logo Genes that share expression patterns with CARD8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CARD8-AS1 Gene

Orthologs for CARD8-AS1 Gene

Evolution for CARD8-AS1 Gene

ENSEMBL:
Gene Tree for CARD8-AS1 (if available)
TreeFam:
Gene Tree for CARD8-AS1 (if available)

No data available for Orthologs for CARD8-AS1 Gene

Paralogs for CARD8-AS1 Gene

No data available for Paralogs for CARD8-AS1 Gene

Variants for CARD8-AS1 Gene

Sequence variations from dbSNP and Humsavar for CARD8-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000576173 -- 48,257,957(+) AAATA(C/G)GGAAG nc-transcript-variant, upstream-variant-2KB
rs1002527839 -- 48,255,287(+) CTTGA(A/G)CCTGG intron-variant, upstream-variant-2KB
rs1002819439 -- 48,258,129(+) TTTCC(A/G)TCCAT nc-transcript-variant, upstream-variant-2KB
rs1003101860 -- 48,257,843(+) GTCTA(C/T)AGAGT nc-transcript-variant, upstream-variant-2KB
rs1003154439 -- 48,256,595(+) AAGTG(C/T)TGGGA nc-transcript-variant, upstream-variant-2KB

Relevant External Links for CARD8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CARD8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CARD8-AS1 Gene

Disorders for CARD8-AS1 Gene

Relevant External Links for CARD8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CARD8-AS1

No disorders were found for CARD8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CARD8-AS1 Gene

Publications for CARD8-AS1 Gene

  1. Co-expression Network Analysis of Human lncRNAs and Cancer Genes. (PMID: 25392693) Cogill SB … Wang L (Cancer informatics 2014) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CARD8-AS1 Gene

Sources for CARD8-AS1 Gene

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