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CARD17 Gene

protein-coding   GIFtS: 42
GCID: GC11M104963

Caspase Recruitment Domain Family, Member 17

  See CARD17-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Caspase Recruitment Domain Family, Member 171 2     Inhibitory Caspase Recruitment Domain Protein2 3
INCA2 3 5     Caspase Recruitment Domain-Containing Protein 172
Inhibitory CARD1 2     Inhibitory Caspase Recruitment Domain (CARD) Protein2
Caspase-1 Inhibitor INCA2 3     

External Ids:    HGNC: 338271   Entrez Gene: 4400682   Ensembl: ENSG000002552217   OMIM: 6094905   UniProtKB: Q5XLA63   

Export aliases for CARD17 gene to outside databases

Previous GC identifers: GC11M104468 GC11M104896


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CARD17 Gene:
CARD17 (caspase recruitment domain family, member 17) is a protein-coding gene. Diseases associated with CARD17 include shigellosis. GO annotations related to this gene include cysteine-type endopeptidase activity and cysteine-type endopeptidase inhibitor activity. An important paralog of this gene is CARD18.

UniProtKB/Swiss-Prot: CAR17_HUMAN, Q5XLA6
Function: Regulator of procaspase-1/CASP1 activation implicated in the regulation of the proteolytic maturation of
pro-IL-1beta/IL1B and its release during inflammation. Inhibits the release of IL1B in response to LPS in
monocytes. However, unlike CASP1, do not induce NF-kappa-B activation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the CARD17 gene promoter:
         AML1a   IRF-1   CUTL1   Evi-1   GATA-1   C/EBPalpha   CHOP-10   IRF-2   POU2F1   POU2F1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): CARD17 promoter sequence
   Search Chromatin IP Primers for CARD17

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CARD17


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q22.3   Ensembl cytogenetic band:  11q22.3   HGNC cytogenetic band: 11q22.3

CARD17 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CARD17 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M104963:  view genomic region     (about GC identifiers)

Start:
104,963,196 bp from pter      End:
104,972,158 bp from pter
Size:
8,963 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: CAR17_HUMAN, Q5XLA6 (See protein sequence)
Recommended Name: Caspase recruitment domain-containing protein 17  
Size: 110 amino acids; 11868 Da
Subunit: Interacts with pro-CASP1

Explore the universe of human proteins at neXtProt for CARD17: NX_Q5XLA6

REFSEQ proteins: NP_001007233.1  
ENSEMBL proteins: 
 ENSP00000364859  

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antibodies-online peptides for CARD17

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR011029 DEATH-like_dom
 IPR001315 CARD

Graphical View of Domain Structure for InterPro Entry Q5XLA6

ProtoNet protein and cluster: Q5XLA6

1 Blocks protein domain: IPB001315 CARD interaction domain

UniProtKB/Swiss-Prot: CAR17_HUMAN, Q5XLA6
Similarity: Contains 1 CARD domain


Find genes that share domains with CARD17           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: CAR17_HUMAN, Q5XLA6
Function: Regulator of procaspase-1/CASP1 activation implicated in the regulation of the proteolytic maturation of
pro-IL-1beta/IL1B and its release during inflammation. Inhibits the release of IL1B in response to LPS in
monocytes. However, unlike CASP1, do not induce NF-kappa-B activation
Induction: By IFNG/IFN-gamma in monocytic cell lines

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004869cysteine-type endopeptidase inhibitor activity IEA--
GO:0005515protein binding ----
     
Find genes that share ontologies with CARD17           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
CAR17_HUMAN, Q5XLA6: Cytoplasm (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol4
nucleus3
extracellular2
lysosome2
mitochondrion2
plasma membrane2
vacuole2
cytoskeleton1
endoplasmic reticulum1
endosome1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular ----
GO:0005737cytoplasm IEA--

Find genes that share ontologies with CARD17           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for CARD17 About    
See pathways by source

SuperPathContained pathways About
1Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways0.68
The AIM2 inflammasome0.00
NOD1/2 Signaling Pathway0.68
Inflammasomes0.00
The IPAF inflammasome0.00
2Signaling by Interleukins
Signaling by Interleukins0.42
Interleukin-1 processing0.00
3Interferon Signaling
Cytokine Signaling in Immune system0.59



    Pathway & Disease-focused RT2 Profiler PCR Array including CARD17: 
          Apoptosis 384HT in human mouse rat

Interactions:

    GeneGlobe Interaction Network for CARD17

3 Interacting proteins for CARD17 (Q5XLA63) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
CARD16Q5EG053I2D: score=1 
CARD18P577303I2D: score=1 
CASP1P294663I2D: score=1 
About this table

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0042981regulation of apoptotic process IEA--

Find genes that share ontologies with CARD17           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for CARD17 (CAR17)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for CARD17 gene: 
NM_001007232.1  

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000375707(uc001pir.1)
miRNA
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  QuantiFast Probe-based Assays in human, mouse, rat CARD17

22 AceView cDNA sequences:

AI220630 BX112394 BG197691 AK128199 BG210916 BX107910 AI189378 BU753497 
N29857 N57279 BG184388 BG203011 BG213311 BG207514 AA621311 BG217577 
BG434571 H02187 BG181238 BG194293 AW592912 BG200939 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CARD17 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
CARD17 Expression
About this image

CARD17 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

UniProtKB/Swiss-Prot: CAR17_HUMAN, Q5XLA6
Tissue specificity: Ubiquitous

    Pathway & Disease-focused RT2 Profiler PCR Array including CARD17: 
          Apoptosis 384HT in human mouse rat

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CARD17

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of mammals.

Orthologs for CARD17 gene from Selected species (see all 3)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
oppossum
(Monodelphis domestica)
Mammalia --
Uncharacterized protein
40(a)
1 → many
4(250308778-250326549)


ENSEMBL Gene Tree for CARD17 (if available)
TreeFam Gene Tree for CARD17 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for CARD17 gene
CARD182  CARD162  
3 SIMAP similar genes for CARD17 using alignment to 1 protein entry:     CAR17_HUMAN:
CARD16    CASP1    CARD18

Find genes that share paralogs with CARD17           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CARD17 (see all 302)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1477931221,2
--104962783(+) AAAAAC/GAAAAA 1 -- ds50010--------
rs1179305901,2
F--104963033(+) GTGGGC/TGCTCA 1 -- ds50011Minor allele frequency- T:0.02NA 120
rs1931368721,2
--104963095(+) TTCTCA/CATCGG 1 -- ds50010--------
rs1411540721,2
--104963102(+) TCGGTA/CGACTT 1 -- ds50010--------
rs17858781,2
C,F,A,H--104963106(+) TAGACC/TTCGAG 1 -- ds500129Minor allele frequency- T:0.47NS EA NA CSA WA 2891
rs1856612371,2
--104963147(+) TTACTA/CAACCT 1 -- ds50010--------
rs1892665761,2
--104963176(+) ACACAC/TATACC 1 -- ds50010--------
rs1151019131,2
C,F--104963218(+) TTAATG/ATACTG 1 -- ut311Minor allele frequency- A:0.02WA 118
rs1130626711,2
C,F--104963239(+) GAAACG/ATCTTG 1 -- ut311Minor allele frequency- A:0.50CSA 2
rs1118243821,2
C,F--104963277(+) TCTGTG/TCTTTA 1 -- ut312Minor allele frequency- T:0.04CSA WA 120

HapMap Linkage Disequilibrium report for CARD17 (104963196 - 104972158 bp)

Structural Variations
     Database of Genomic Variants (DGV) 9 variations for CARD17:    About this table    
Variant IDTypeSubtypePubMed ID
esv2745018CNV Deletion23290073
nsv524985CNV Loss19592680
nsv8871CNV Gain18304495
nsv468862CNV Gain19166990
esv33277CNV Gain17666407
esv2750978CNV Gain17911159
nsv442241CNV CNV18776908
esv1015CNV CNV17122850
dgv437e1CNV Complex17122850

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 609490    OMIM disorders: --

1 disease for CARD17:    
About MalaCards
shigellosis

6 diseases from the University of Copenhagen DISEASES database for CARD17:
Cancer     Familial Mediterranean fever     Shigellosis     Cowpox
Neurodegenerative disease     Vascular disease

Find genes that share disorders with CARD17           About GenesLikeMe


Export disorders for CARD17 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CARD17 gene integrated from 10 sources:
(articles sorted by number of sources associating them with CARD17)
    Utopia: connect your pdf to the dynamic
world of online information

  1. INCA, a novel human caspase recruitment domain protein that inhibits interleukin-1beta generation. (PubMed id 15383541)1, 2, 3, 9 Lamkanfi M.... Vandenabeele P. (J. Biol. Chem. 2004)
  2. A genome-wide association study (GWAS) for bronchopulmonary dysplasia. (PubMed id 23897914)1 Wang H....O'Brodovich H.M. (Pediatrics 2013)
  3. SNARE protein mimicry by an intracellular bacterium. (PubMed id 18369472)9 Delevoye C....Subtil A. (PLoS Pathog. 2008)
  4. Identification and characterisation of coding tandem repeat variants in incA gene of Chlamydophila pecorum. (PubMed id 18651990)9 Yousef Mohamad K....Rodolakis A. (Vet. Res. 2008)
  5. A phylogenetic and functional overview of inflammatory caspases and caspase-1-related CARD-only proteins. (PubMed id 18031255)9 Kersse K....Vandenabeele P. (Biochem. Soc. Trans. 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 440068 HGNC: 33827 AceView: LOC440068 Ensembl:ENSG00000255221 euGenes: HUgn440068
ECgene: CARD17 H-InvDB: CARD17

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CARD17 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CARD17 gene:
Search GeneIP for patents involving CARD17

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Search Tocris compounds for CARD17 (CAR17)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Tissue Slides
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 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CARD17
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 LSBio Antibodies in human, mouse, rat for CARD17
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 Search Addgene for plasmids for CARD17
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Customized transgenic rodents for:
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 antibodies-online antibodies for CARD17 (23 products)
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 antibodies-online proteins for CARD17 (3 products)
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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