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CARD10 Gene

protein-coding   GIFtS: 57

GC22M036210
caspase recruitment domain family, member 10
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
BIMP1 1, 2, 5
CARMA3 1, 2, 3, 5
MGC142219 2
Descriptions
Bcl10 binding protein and activator of NFKB 2
CARD-containing MAGUK 3 protein 2
CARD-containing MAGUK protein 3 3
Carma 3 3
caspase recruitment domain family, member 10 2
caspase recruitment domain protein 10 2
External Ids
HGNC: 164221
Entrez Gene: 297752
UniProtKB: Q9BWT73
Ensembl: ENSG000001000657
Search outside databases for aliases for CARD10 gene

Previous GC identifers: GC22M034500 GC22M036129

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for CARD10:
The caspase recruitment domain (CARD) is a protein module that consists of 6 or 7 antiparallel
alpha helices. It participates in apoptosis signaling through highly specific protein-protein
homophilic interactions. Like several other CARD proteins, CARD10 belongs to the
membrane-associated guanylate kinase (MAGUK) family and activates NF-kappa-B (NFKB; see MIM
164011) through BCL10 (MIM 603517) (Wang et al., 2001 [PubMed 11259443]).[supplied by OMIM]

UniProtKB/Swiss-Prot: CAR10_HUMAN, Q9BWT7
Function: Activates NF-kappa-B via BCL10 and IKK

Gene Wiki entry for CARD10

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CARD10 gene  

Entrez Gene cytogenetic band: 22q13.1   Ensembl cytogenetic band:  22q13.1   HGNC cytogenetic band: 22q13.1

CARD10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M036210:     (about GC identifiers)

Start:
36,216,346 bp from pter
End:
36,245,495 bp from pter
Size:
29,150 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000022.9  NT_011520.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: CAR10_HUMAN, Q9BWT7 (See protein sequence)
Recommended Name: Caspase recruitment domain-containing protein 10  
Size: 1032 amino acids; 115931 Da
Subunit: CARD10 and BCL10 bind to each other by CARD-CARD interaction. They both participate in a
complex with MALT1, where MALT1 binds to BCL10 (By similarity)
Subcellular location: Cytoplasm (By similarity)
Caution: Supposed to contain a SH3, a PDZ and a guanylate kinase-like domain. But none of these 3
domains are detected by PROSITE, Pfam or SMART
Secondary accessions: Q14CQ8 Q5TFG6 Q9UGR5 Q9UGR6 Q9Y3H0

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_055365.2  

    ENSEMBL proteins: 
    ENSP00000385799 ENSP00000384570 ENSP00000251973 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (CARD10)
    Human Recombinant Proteins from Abnova (CARD10)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    GO:0005737 cytoplasm NAS11259443
    GO:0032449 CBM complex NAS15125833
    About this table

    Antibodies for CARD10: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for CARD10
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (CARD10), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Novus Biologicals Antibody for CARD10

    Assays for CARD10: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR001315 CARD


       GeneDecks  CARD10 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9BWT7

    ProtoNet protein and cluster: Q9BWT7

    1 Blocks protein family: IPB001315 CARD interaction domain

    UniProtKB/Swiss-Prot: CAR10_HUMAN, Q9BWT7
    Similarity: Contains 1 CARD domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CARD10)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014550

                  Applied Biosystems Silencer® siRNAs for CARD10

                  Sigma-Aldrich siRNA for CARD10  
                         Sigma-Aldrich shRNA for CARD10  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_014550
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_014550
                                     untagged cDNA clone in CMV expression vector: NM_014550 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_014550

    UniProtKB/Swiss-Prot: CAR10_HUMAN, Q9BWT7
    Function: Activates NF-kappa-B via BCL10 and IKK

    4 MGI mutant phenotypes (inferred from 1 allele(MGI details for Card10):

    craniofaciallethality-prenatal/perinatalnervous systemskeleton

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI11259443
    GO:0030159 receptor signaling complex scaffold activity NAS11259443
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for CARD10 (Maps provided by GeneGo):
     Role of CARD-protein family in NF-kB regulation

       GeneDecks  CARD10 for the pathways selected above  
    About GeneDecksing

    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  CARD10  (Your Favorite Gene powered by Ingenuity) 
     NF-&kappa
     B Cell Receptor Signaling

       GeneDecks  CARD10 for the pathways selected above  
    About GeneDecksing

    1 Cell Signaling Technology (CST) Pathway for CARD10: 
     B Cell Receptor Signaling

       GeneDecks  CARD10 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  CARD10 


    5/7 Interacting proteins for CARD10 (ENSP000002519733) via UniProtKB, MINT, and/or STRING (see all 7 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    BCL10ENSP000002710153STRING (score=.999)
    MALT1ENSP000003192793STRING (score=.996)
    IKBKGENSP000003586223STRING (score=.972)
    GUK1ENSP000003556803STRING (score=.935)
    IKBKBENSP000003391513STRING (score=.89)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006461 protein complex assembly NAS11259443
    GO:0007250 activation of NF-kappaB-inducing kinase activity IDA11259443
    GO:0042981 regulation of apoptosis IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for CARD10

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CARD10)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014550

                  Sigma-Aldrich siRNA for CARD10  
                         Sigma-Aldrich shRNA for CARD10  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_014550  

    REFSEQ mRNAs for CARD10 gene: 

    NM_014550.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_014550  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_014550
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_014550
                                     untagged cDNA clone in CMV expression vector: NM_014550 

    Additional cDNA sequence: 

    AF086324.1 AK074906.1 AK296176.1 AY028896.1 AY032928.1 BC032058.1 BC113659.1 BC117403.1 

    10 DOTS entries:

    DT.309950  DT.95272280  DT.101961630  DT.100028856  DT.100028855  DT.120648630  DT.120648667  DT.91814521 
    DT.99971659  DT.95272279 

    24/113 AceView cDNA sequences (see all 113 ):

    AW024347 AI829451 BQ690010 BI764337 AI739413 AW138129 BM980824 BE906442 
    BI792107 AI948904 BQ691608 AW612524 AW137435 BE048709 AI948914 AW969602 
    BQ688908 AA397734 BE465866 AA513369 CA489572 CD625764 AF086324 BU145814 

    highest scoring ESTs for CARD10:

    AY028896 AY032928 BG717357 CA489572 AA113168 AA397734 AA399648 AA513369 AA609085 AA642933 

    Unigene Cluster for CARD10:

    Caspase recruitment domain family, member 10
    Hs.57973  [show with all ESTs]
    Unigene Representative Sequence: AY028896


    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for CARD10 (see all 12 )

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b · 15c ^ 16a · 16b · 16c ^ 17a · 17b ^ 18a · 18b ^
    SP1:                                                                                                                    -     -                                 
    SP2:                                                                                                                                                            
    SP3:                                                  -                                                                                                         
    SP4:                                                                                            -     -                 -     -                                 
    SP5:                                                                                                                                                            

    ExUns: 19 ^ 20a · 20b · 20c ^ 21 ^ 22a · 22b ^ 23 ^ 24a · 24b
    SP1:        -                                                   
    SP2:        -                                                   
    SP3:                                                            
    SP4:                                                            
    SP5:                                                            

    About this scheme

    ECgene alternative splicing isoforms for CARD10

    3 Ensembl transcripts including schematic representations:
    ENST00000406271  ENST00000403299  ENST00000251973  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    CARD10 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for CARD10

    1 / 2 / 3

    6 probe-sets matching CARD10 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    41816_at2, 3 U95-A 1 1.00 1.00 0.97 0.90 AL049851 0.20 1.00 0.72 1

    41817_g_at2, 3 U95-A 2 1.00 0.97 0.92 1.10 AL049851 0.20 1.00 0.72 1

    210026_s_at2, 3 U133-A 1 1.00 1.00 -- -- AY028896 0.80 1.00 0.91 1

    210025_s_at2, 3 U133-A 1 1.00 1.00 -- -- AW205153 0.60 1.00 0.82 1

    210026_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    210025_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: AGAATGTACG

    SOURCE GeneReport for Unigene cluster: Hs.57973

    Expression variation in blood from EXPOLDB for CARD10

    UniProtKB/Swiss-Prot: CAR10_HUMAN, Q9BWT7
    Tissue specificity: Detected in adult heart, kidney and liver; lower levels in intestine, placenta,
    muscle and lung. Also found in fetal lung, liver and kidney

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for CARD10 gene from 5/6 species (see all 6 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    CARD101   -- caspase recruitment domain family, member 10 89.79(n)
    93(a)
    481268  XM_538389.2  XP_538389.2 
    chimpanzee
    (Pan troglodytes)
    CARD101   -- caspase recruitment domain family, member 10 98.8(n)
    98.83(a)
    458812  XM_001160660.1  XP_001160660.1 
    cow
    (Bos taurus)
    CARD101   -- caspase recruitment domain family, member 10 89.54(n)
    92.57(a)
    535188  XM_615197.3  XP_615197.3 
    rat
    (Rattus norvegicus)
    Card101   -- caspase recruitment domain family, member 10 85.75(n)
    91.08(a)
    315120  XM_243622.4  XP_243622.4 
    mouse
    (Mus musculus)
    Card101, 5 155
    caspase recruitment domain family, member 101, 5 86.67(n)1
    91.67(a)1
    1058441  NM_130859.21  NP_570929.11 
     AF3634565  AI4490265  (see all 10)
    About this table        Species with no ortholog for CARD10

    ENSEMBL Gene Tree for CARD10
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for CARD10 gene
    CARD142  CARD112  CARD92  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/271 NCBI SNPs in CARD10 are shown (see all 271 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 94)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 22 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs96107751,2
    A,C,F,H36236208(+) TCAGCC/TGCTGG 1 R/Q mis1 ese34Minor allele frequency- T:0.21EU EA WA 416
    rs72902741,2
    A,C,F,H36245861(+) GGGGCT/CTTCTG 1 -- ng314Minor allele frequency- C:0.11EA WA 474
    --
    rs57504411,2
    A,C,F36216474(+) AGGCAT/CAGGCA 1 -- ut31 ese31Minor allele frequency- C:0.07--836
    rs38178051,2
    A,C,F,H36230708(+) GAATGG/AGAGGA 1 S/S syn14Minor allele frequency- A:0.16EU EA WA 412
    rs38178031,2
    A,C,F,H36230222(+) AGCCGA/GTTGAT 1 N/N syn1 ese314Minor allele frequency- N:0.00EA EU WA NA 2734
    rs38178021,2
    C,F36230189(+) GAGCCG/AGCACT 1 A/A syn11Minor allele frequency- A:0.03EA 1500
    rs57567091,2
    H36241988(+) TGCCAG/AGCGCA 1 L/L syn1 ese34Minor allele frequency- A:0.00EU EA WA 416
    --
    rs72878041,2
    A36245046(+) AGCCGA/GTGCCG 1 H/H syn1 ese30--------
    rs9323261,2
    A,C,F,H,O36234903(+) GTTCAC/GCCAGG 1 -- int112Minor allele frequency- N:0.00EU EA WA NA 1050
    rs57504421,2
    A,C,F,H36222036(+) GGCCAA/TAGACA 1 -- int15Minor allele frequency- T:0.17EU EA WA 1254
    About this table

    HapMap Linkage Disequilibrium images for CARD10 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 607209

    Human Genome Epidemiology Navigator: CARD10 (1 document)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/17 PubMed articles for CARD10 gene (see all 17 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 29775 HGNC: 16422 AceView: CARD10 Ensembl:ENSG00000100065 euGenes: HUgn29775
    ECgene: CARD10 H-InvDB: CARD10
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for CARD10:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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