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Aliases for CAPN7 Gene

Aliases for CAPN7 Gene

  • Calpain 7 2 3 5
  • Homolog Of Aspergillus Nidulans PALB 2 3
  • Calpain Like Protease 2 3
  • PalB Homolog 3 4
  • PALBH 3 4
  • EC 3.4.22.- 4
  • EC 3.4.22 63
  • CALPAIN7 3

External Ids for CAPN7 Gene

Previous GeneCards Identifiers for CAPN7 Gene

  • GC03P015177

Summaries for CAPN7 Gene

Entrez Gene Summary for CAPN7 Gene

  • Calpains are ubiquitous, well-conserved family of calcium-dependent, cysteine proteases. The calpain proteins are heterodimers consisting of an invariant small subunit and variable large subunits. The large subunit possesses a cysteine protease domain, and both subunits possess calcium-binding domains. Calpains have been implicated in neurodegenerative processes, as their activation can be triggered by calcium influx and oxidative stress. The function of the protein encoded by this gene is not known. An orthologue has been found in mouse but it seems to diverge from other family members. The mouse orthologue is thought to be calcium independent with protease activity. [provided by RefSeq, Jul 2008]

GeneCards Summary for CAPN7 Gene

CAPN7 (Calpain 7) is a Protein Coding gene. Among its related pathways are Degradation of the extracellular matrix and Integrin Pathway. GO annotations related to this gene include endopeptidase activity and MIT domain binding. An important paralog of this gene is CAPN15.

UniProtKB/Swiss-Prot for CAPN7 Gene

  • Calcium-regulated non-lysosomal thiol-protease.

Tocris Summary for CAPN7 Gene

  • Calpains are a group of calcium-sensitive cysteine proteases that are ubiquitously expressed in mammals. Structurally, calpains contain two subunits; an 80 kDa catalytic subunit and a 28 kDa regulatory subunit that functions as a chaperone to stabilize the 80 kDa structure.

No data available for Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAPN7 Gene

Genomics for CAPN7 Gene

Regulatory Elements for CAPN7 Gene

Promoters for CAPN7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CAPN7 on UCSC Golden Path with GeneCards custom track

Genomic Location for CAPN7 Gene

Chromosome:
3
Start:
15,206,152 bp from pter
End:
15,252,918 bp from pter
Size:
46,767 bases
Orientation:
Plus strand

Genomic View for CAPN7 Gene

Genes around CAPN7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAPN7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAPN7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAPN7 Gene

Proteins for CAPN7 Gene

  • Protein details for CAPN7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6W3-CAN7_HUMAN
    Recommended name:
    Calpain-7
    Protein Accession:
    Q9Y6W3

    Protein attributes for CAPN7 Gene

    Size:
    813 amino acids
    Molecular mass:
    92652 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for CAPN7 Gene

neXtProt entry for CAPN7 Gene

Proteomics data for CAPN7 Gene at MOPED

Selected DME Specific Peptides for CAPN7 Gene

Post-translational modifications for CAPN7 Gene

  • Ubiquitination at Lys 130, Lys 217, Lys 320, Lys 419, and Lys 503
  • Modification sites at PhosphoSitePlus

Other Protein References for CAPN7 Gene

Domains & Families for CAPN7 Gene

Gene Families for CAPN7 Gene

Suggested Antigen Peptide Sequences for CAPN7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y6W3

UniProtKB/Swiss-Prot:

CAN7_HUMAN :
  • Contains 1 calpain catalytic domain.
  • Belongs to the peptidase C2 family.
Domain:
  • Contains 1 calpain catalytic domain.
Family:
  • Belongs to the peptidase C2 family.
genes like me logo Genes that share domains with CAPN7: view

Function for CAPN7 Gene

Molecular function for CAPN7 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Broad endopeptidase specificity.
UniProtKB/Swiss-Prot Function:
Calcium-regulated non-lysosomal thiol-protease.

Enzyme Numbers (IUBMB) for CAPN7 Gene

Gene Ontology (GO) - Molecular Function for CAPN7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004175 endopeptidase activity IDA 20849418
GO:0090541 MIT domain binding IPI 20849418
genes like me logo Genes that share ontologies with CAPN7: view
genes like me logo Genes that share phenotypes with CAPN7: view

Animal Models for CAPN7 Gene

MGI Knock Outs for CAPN7:

Animal Model Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CAPN7 Gene

Localization for CAPN7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CAPN7 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CAPN7 Gene COMPARTMENTS Subcellular localization image for CAPN7 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 4
endosome 2

Gene Ontology (GO) - Cellular Components for CAPN7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with CAPN7: view

Pathways & Interactions for CAPN7 Gene

genes like me logo Genes that share pathways with CAPN7: view

Pathways by source for CAPN7 Gene

Gene Ontology (GO) - Biological Process for CAPN7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
genes like me logo Genes that share ontologies with CAPN7: view

No data available for SIGNOR curated interactions for CAPN7 Gene

Drugs & Compounds for CAPN7 Gene

(2) Drugs for CAPN7 Gene - From: HMDB and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
MDL 28170 Pharma Calpain and cathepsin B inhibitor, selective, Potent, selective calpain and cathepsin B inhibitor 0

(4) Additional Compounds for CAPN7 Gene - From: Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Acetyl-Calpastatin (184-210) (human)
123714-50-1
Calpeptin
117591-20-5
MG 132
133407-82-6
PD 150606
179528-45-1
genes like me logo Genes that share compounds with CAPN7: view

Transcripts for CAPN7 Gene

Unigene Clusters for CAPN7 Gene

Calpain 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CAPN7 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19a · 19b ^ 20a · 20b ^ 21 ^ 22a ·
SP1: - - -
SP2: - -
SP3: -
SP4:
SP5:

ExUns: 22b · 22c
SP1:
SP2:
SP3:
SP4:
SP5:

Relevant External Links for CAPN7 Gene

GeneLoc Exon Structure for
CAPN7
ECgene alternative splicing isoforms for
CAPN7

Expression for CAPN7 Gene

mRNA expression in normal human tissues for CAPN7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CAPN7 Gene

This gene is overexpressed in Urine (42.4) and Lymph node (7.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CAPN7 Gene



SOURCE GeneReport for Unigene cluster for CAPN7 Gene Hs.595234

mRNA Expression by UniProt/SwissProt for CAPN7 Gene

Q9Y6W3-CAN7_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with CAPN7: view

Protein tissue co-expression partners for CAPN7 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for CAPN7 Gene

Orthologs for CAPN7 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CAPN7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CAPN7 36
  • 100 (a)
OneToOne
CAPN7 35
  • 99.71 (n)
  • 99.75 (a)
cow
(Bos Taurus)
Mammalia CAPN7 35
  • 91.14 (n)
  • 95.69 (a)
CAPN7 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CAPN7 36
  • 97 (a)
OneToOne
CAPN7 35
  • 93.64 (n)
  • 96.8 (a)
mouse
(Mus musculus)
Mammalia Capn7 16
Capn7 35
  • 89.79 (n)
  • 95.2 (a)
Capn7 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CAPN7 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 85 (a)
OneToMany
-- 36
  • 77 (a)
OneToMany
-- 36
  • 77 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Capn7 35
  • 89.09 (n)
  • 95.33 (a)
chicken
(Gallus gallus)
Aves CAPN7 36
  • 83 (a)
OneToOne
CAPN7 35
  • 79.19 (n)
  • 83.74 (a)
lizard
(Anolis carolinensis)
Reptilia CAPN7 36
  • 84 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.15745 35
tropical clawed frog
(Silurana tropicalis)
Amphibia capn7 35
  • 74.57 (n)
  • 81.38 (a)
Str.14941 35
zebrafish
(Danio rerio)
Actinopterygii capn7 36
  • 77 (a)
OneToOne
capn7 35
  • 70.52 (n)
  • 77.12 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010834 35
  • 51.99 (n)
  • 51.28 (a)
worm
(Caenorhabditis elegans)
Secernentea clp-2 35
  • 52.37 (n)
  • 43.77 (a)
clp-2 36
  • 41 (a)
OneToOne
clp-2 37
  • 41 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RIM13 38
bread mold
(Neurospora crassa)
Ascomycetes NCU00317 35
  • 42.19 (n)
  • 33.21 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
OneToOne
Species with no ortholog for CAPN7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CAPN7 Gene

ENSEMBL:
Gene Tree for CAPN7 (if available)
TreeFam:
Gene Tree for CAPN7 (if available)

Paralogs for CAPN7 Gene

Paralogs for CAPN7 Gene

genes like me logo Genes that share paralogs with CAPN7: view

Variants for CAPN7 Gene

Sequence variations from dbSNP and Humsavar for CAPN7 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs864322 -- 15,221,473(-) gctca(C/T)gcctg intron-variant
rs826425 -- 15,226,499(+) TGACA(A/G)GTTAA intron-variant
rs826426 -- 15,218,358(-) GAGAA(C/T)AAACA intron-variant
rs866653 -- 15,216,307(-) gaaag(A/C)caata intron-variant
rs1297868 -- 15,229,561(+) TTTTT(C/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CAPN7 Gene

Variant ID Type Subtype PubMed ID
nsv428413 CNV Gain 18775914
nsv237085 CNV Loss 16902084
nsv525308 CNV Loss 19592680
esv2548358 CNV Insertion 19546169
esv273698 CNV Insertion 20981092
esv271990 CNV Insertion 20981092

Variation tolerance for CAPN7 Gene

Residual Variation Intolerance Score: 4.48% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.07; 60.87% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CAPN7 Gene

HapMap Linkage Disequilibrium report
CAPN7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CAPN7 Gene

Disorders for CAPN7 Gene

Relevant External Links for CAPN7

Genetic Association Database (GAD)
CAPN7
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CAPN7

No disorders were found for CAPN7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CAPN7 Gene

Publications for CAPN7 Gene

  1. Molecular cloning of PalBH, a mammalian homologue of the Aspergillus atypical calpain PalB. (PMID: 11342116) Futai E. … Maeda T. (Biochim. Biophys. Acta 2001) 3 4 23 67
  2. Capn7: a highly divergent vertebrate calpain with a novel C-terminal domain. (PMID: 10051333) Franz T. … Dear T.N. (Mamm. Genome 1999) 2 3
  3. New era of calpain research. Discovery of tissue-specific calpains. (PMID: 8163008) Sorimachi H. … Suzuki K. (FEBS Lett. 1994) 2 3
  4. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for CAPN7 Gene

Sources for CAPN7 Gene

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