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Aliases for CAPN10-AS1 Gene

Subcategory (RNA class) for CAPN10-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CAPN10-AS1 Gene

  • CAPN10 Antisense RNA 1 (Head To Head) 2 3
  • Locus 959 2 3
  • Locus959 3

External Ids for CAPN10-AS1 Gene

ORGUL Members for CAPN10-AS1 Gene

Previous GeneCards Identifiers for CAPN10-AS1 Gene

  • GC02M241525

Summaries for CAPN10-AS1 Gene

GeneCards Summary for CAPN10-AS1 Gene

CAPN10-AS1 (CAPN10 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAPN10-AS1 Gene

Genomics for CAPN10-AS1 Gene

Genomic Location for CAPN10-AS1 Gene

Start:
240,582,700 bp from pter
End:
240,586,699 bp from pter
Size:
4,000 bases
Orientation:
Minus strand

Genomic View for CAPN10-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CAPN10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAPN10-AS1 Gene

No data available for Regulatory Elements for CAPN10-AS1 Gene

Proteins for CAPN10-AS1 Gene

Post-translational modifications for CAPN10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAPN10-AS1 Gene

Domains for CAPN10-AS1 Gene

Gene Families for CAPN10-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CAPN10-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAPN10-AS1 Gene

Function for CAPN10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CAPN10-AS1 Gene

Localization for CAPN10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CAPN10-AS1 Gene

Pathways for CAPN10-AS1 Gene

SuperPathways for CAPN10-AS1 Gene

No Data Available

Interacting Proteins for CAPN10-AS1 Gene

Gene Ontology (GO) - Biological Process for CAPN10-AS1 Gene

None

No data available for Pathways by source for CAPN10-AS1 Gene

Transcripts for CAPN10-AS1 Gene

mRNA/cDNA for CAPN10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CAPN10-AS1 Gene

No ASD Table

Relevant External Links for CAPN10-AS1 Gene

GeneLoc Exon Structure for
CAPN10-AS1
ECgene alternative splicing isoforms for
CAPN10-AS1

Expression for CAPN10-AS1 Gene

mRNA expression in normal human tissues for CAPN10-AS1 Gene

genes like me logo Genes that share expressions with CAPN10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CAPN10-AS1 Gene

Orthologs for CAPN10-AS1 Gene

Evolution for CAPN10-AS1 Gene

ENSEMBL:
Gene Tree for CAPN10-AS1 (if available)
TreeFam:
Gene Tree for CAPN10-AS1 (if available)

No data available for Orthologs for CAPN10-AS1 Gene

Paralogs for CAPN10-AS1 Gene

No data available for Paralogs for CAPN10-AS1 Gene

Variants for CAPN10-AS1 Gene

Sequence variations from dbSNP and Humsavar for CAPN10-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1133352 -- 240,582,835(-) TAACA(A/G)GGCTT nc-transcript-variant
rs1133353 -- 240,582,850(-) CTCTC(A/T)GAAGT nc-transcript-variant
rs1133354 -- 240,583,033(-) ATAGG(A/G)CATAG nc-transcript-variant
rs1141005 -- 240,582,872(-) aatca(A/C)ctaga nc-transcript-variant
rs1806466 -- 240,582,292(+) AACCT(C/T)TCCTT downstream-variant-500B

Relevant External Links for CAPN10-AS1 Gene

HapMap Linkage Disequilibrium report
CAPN10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CAPN10-AS1 Gene

Disorders for CAPN10-AS1 Gene

No disorders were found for CAPN10-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CAPN10-AS1 Gene

Publications for CAPN10-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova A.A. … Young R.A. (Proc. Natl. Acad. Sci. U.S.A. 2013) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y. … Zhang H. (Genet. Epidemiol. 2011) 3

Products for CAPN10-AS1 Gene

Sources for CAPN10-AS1 Gene

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