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Aliases for CAPN10-AS1 Gene

Subcategory (RNA class) for CAPN10-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CAPN10-AS1 Gene

  • CAPN10 Antisense RNA 1 (Head To Head) 2 3 5
  • Locus 959 2 3
  • Locus959 3

External Ids for CAPN10-AS1 Gene

ORGUL Members for CAPN10-AS1 Gene

Previous GeneCards Identifiers for CAPN10-AS1 Gene

  • GC02M241525

Summaries for CAPN10-AS1 Gene

GeneCards Summary for CAPN10-AS1 Gene

CAPN10-AS1 (CAPN10 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAPN10-AS1 Gene

Genomics for CAPN10-AS1 Gene

Regulatory Elements for CAPN10-AS1 Gene

Enhancers for CAPN10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G240920 1.9 FANTOM5 Ensembl ENCODE dbSUPER 28.1 -337.1 -337089 6.6 HDGF PKNOX1 ARNT YBX1 ZNF2 ZBTB7B TCF12 ZNF121 GLIS2 ZNF207 CAPN10-AS1 ENSG00000235351 LOC100422094 SNED1 FARP2 ENSG00000223374 DTYMK LOC200772 C2orf54 GPC1
GH02G240603 1.6 Ensembl ENCODE dbSUPER 19.2 -18.6 -18637 3.1 HDGF PKNOX1 FOXA2 ARNT MLX ARID4B DMAP1 YBX1 ZNF2 SLC30A9 CAPN10-AS1 ENSG00000223374 LOC100422094 SNED1 CAPN10 GPR35
GH02G241543 1.3 Ensembl ENCODE 18.9 -959.5 -959503 4.4 HDGF PKNOX1 ZNF133 ARID4B YBX1 ZNF2 ZNF48 ZNF121 ZNF766 FOS CAPN10-AS1 ENSG00000223374 BOK RTP5 SNED1 LOC100422094 SEPT2 ENSG00000235351 LOC105373974 STK25
GH02G240432 1.7 FANTOM5 ENCODE dbSUPER 12 +151.0 150962 5.6 HDGF PKNOX1 ARID4B SIN3A ZNF48 GLIS2 CBX5 ZNF143 FOS ZNF263 CAPN10-AS1 GPC1 GC02P240437 GC02P240438
GH02G240680 0.9 dbSUPER 19.3 -94.6 -94592 0.7 HDGF PKNOX1 GLI4 FOS SP3 YY2 TSHZ1 ZNF662 SMARCA4 ZNF658 SNED1 ENSG00000223374 CAPN10-AS1 LOC100422094 FARP2 AQP12B LOC100420500
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CAPN10-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CAPN10-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000133158 99 2001 HDGF CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766

Genomic Location for CAPN10-AS1 Gene

Chromosome:
2
Start:
240,582,700 bp from pter
End:
240,586,699 bp from pter
Size:
4,000 bases
Orientation:
Minus strand

Genomic View for CAPN10-AS1 Gene

Genes around CAPN10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAPN10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAPN10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAPN10-AS1 Gene

Proteins for CAPN10-AS1 Gene

Post-translational modifications for CAPN10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAPN10-AS1 Gene

Domains & Families for CAPN10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAPN10-AS1 Gene

Function for CAPN10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAPN10-AS1 Gene

Localization for CAPN10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CAPN10-AS1 Gene

Pathways & Interactions for CAPN10-AS1 Gene

SuperPathways for CAPN10-AS1 Gene

No Data Available

Interacting Proteins for CAPN10-AS1 Gene

Gene Ontology (GO) - Biological Process for CAPN10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAPN10-AS1 Gene

Drugs & Compounds for CAPN10-AS1 Gene

No Compound Related Data Available

Transcripts for CAPN10-AS1 Gene

mRNA/cDNA for CAPN10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CAPN10-AS1 Gene

No ASD Table

Relevant External Links for CAPN10-AS1 Gene

GeneLoc Exon Structure for
CAPN10-AS1
ECgene alternative splicing isoforms for
CAPN10-AS1

Expression for CAPN10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CAPN10-AS1 Gene

genes like me logo Genes that share expression patterns with CAPN10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAPN10-AS1 Gene

Orthologs for CAPN10-AS1 Gene

Evolution for CAPN10-AS1 Gene

ENSEMBL:
Gene Tree for CAPN10-AS1 (if available)
TreeFam:
Gene Tree for CAPN10-AS1 (if available)

No data available for Orthologs for CAPN10-AS1 Gene

Paralogs for CAPN10-AS1 Gene

No data available for Paralogs for CAPN10-AS1 Gene

Variants for CAPN10-AS1 Gene

Sequence variations from dbSNP and Humsavar for CAPN10-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000263371 -- 240,584,074(+) CTGGG(G/T)TAGCA nc-transcript-variant
rs1000288221 -- 240,584,222(+) GATCT(C/G)GGCTC nc-transcript-variant
rs1000432931 -- 240,586,873(+) ACCCC(G/T)AGGCA upstream-variant-2KB, utr-variant-5-prime
rs1000593264 -- 240,582,456(+) CACAA(A/T)ACCAC downstream-variant-500B
rs1001460094 -- 240,586,812(+) GGGAA(C/T)GGGCG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CAPN10-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759119 CNV gain 17122850
nsv1001262 CNV gain 25217958
nsv470529 CNV loss 18288195
nsv834586 CNV loss 17160897
nsv955291 CNV deletion 24416366

Relevant External Links for CAPN10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAPN10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CAPN10-AS1 Gene

Disorders for CAPN10-AS1 Gene

Relevant External Links for CAPN10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CAPN10-AS1

No disorders were found for CAPN10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CAPN10-AS1 Gene

Publications for CAPN10-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova A.A. … Young R.A. (Proc. Natl. Acad. Sci. U.S.A. 2013) 2 3 64
  2. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y. … Zhang H. (Genet. Epidemiol. 2011) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CAPN10-AS1 Gene

Sources for CAPN10-AS1 Gene

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