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Aliases for CAPN10-AS1 Gene

Subcategory (RNA class) for CAPN10-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CAPN10-AS1 Gene

  • CAPN10 Antisense RNA 1 (Head To Head) 2 3 5
  • Locus 959 2 3
  • Locus959 3

External Ids for CAPN10-AS1 Gene

ORGUL Members for CAPN10-AS1 Gene

Previous GeneCards Identifiers for CAPN10-AS1 Gene

  • GC02M241525

Summaries for CAPN10-AS1 Gene

GeneCards Summary for CAPN10-AS1 Gene

CAPN10-AS1 (CAPN10 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CAPN10-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAPN10-AS1 Gene

Genomics for CAPN10-AS1 Gene

Regulatory Elements for CAPN10-AS1 Gene

Enhancers for CAPN10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H241543 1.3 Ensembl ENCODE 18.9 -959.5 -959503 4 HDGF PKNOX1 ZNF133 ARID4B YBX1 ZNF2 ZNF121 ZNF766 FOS ZNF548 ENSG00000223374 MTERF4 ATG4B ANKMY1 ING5 CAPN10 FARP2 SNED1 D2HGDH DTYMK
GH02H240432 1.6 FANTOM5 ENCODE dbSUPER 12 +151.0 150962 5 ARID4B SIN3A GLIS2 ZNF143 FOS SP5 NFYC REST PPARG SMARCB1 ENSG00000223374 MTERF4 CAPN10-AS1 CAPN10 ANKMY1 GPC1 GC02P240437 GC02P240438
GH02H241505 1.1 ENCODE 11.9 -920.8 -920775 4 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZBTB7B SLC30A9 ZNF766 ZNF143 ING5 ATG4B ENSG00000235351 MTERF4 CAPN10-AS1 SEPT2 CAPN10 FARP2 HDLBP ANO7
GH02H240873 1 ENCODE 12 -288.7 -288656 3 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 SP5 ZHX2 MXD4 NFYC C2orf54 ING5 ATG4B ENSG00000235351 MTERF4 CAPN10-AS1 CAPN10 AGXT
GH02H240578 1.5 Ensembl ENCODE dbSUPER 6.6 +7.0 6980 3 FOXA2 MLX ARID4B SIN3A DMAP1 SLC30A9 GLIS2 ZNF143 ATF7 FOS MTERF4 ENSG00000223374 ANKMY1 FARP2 CAPN10 CAPN10-AS1 PIR33196
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CAPN10-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CAPN10-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000133158 99 2001 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 ZNF143

Genomic Location for CAPN10-AS1 Gene

Chromosome:
2
Start:
240,582,700 bp from pter
End:
240,586,699 bp from pter
Size:
4,000 bases
Orientation:
Minus strand

Genomic View for CAPN10-AS1 Gene

Genes around CAPN10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAPN10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAPN10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAPN10-AS1 Gene

Proteins for CAPN10-AS1 Gene

Post-translational modifications for CAPN10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAPN10-AS1 Gene

Domains & Families for CAPN10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAPN10-AS1 Gene

Function for CAPN10-AS1 Gene

Phenotypes From GWAS Catalog for CAPN10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAPN10-AS1 Gene

Localization for CAPN10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAPN10-AS1 Gene

Pathways & Interactions for CAPN10-AS1 Gene

SuperPathways for CAPN10-AS1 Gene

No Data Available

Interacting Proteins for CAPN10-AS1 Gene

Gene Ontology (GO) - Biological Process for CAPN10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAPN10-AS1 Gene

Drugs & Compounds for CAPN10-AS1 Gene

No Compound Related Data Available

Transcripts for CAPN10-AS1 Gene

mRNA/cDNA for CAPN10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CAPN10-AS1 Gene

No ASD Table

Relevant External Links for CAPN10-AS1 Gene

GeneLoc Exon Structure for
CAPN10-AS1
ECgene alternative splicing isoforms for
CAPN10-AS1

Expression for CAPN10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CAPN10-AS1 Gene

genes like me logo Genes that share expression patterns with CAPN10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAPN10-AS1 Gene

Orthologs for CAPN10-AS1 Gene

Evolution for CAPN10-AS1 Gene

ENSEMBL:
Gene Tree for CAPN10-AS1 (if available)
TreeFam:
Gene Tree for CAPN10-AS1 (if available)

No data available for Orthologs for CAPN10-AS1 Gene

Paralogs for CAPN10-AS1 Gene

No data available for Paralogs for CAPN10-AS1 Gene

Variants for CAPN10-AS1 Gene

Sequence variations from dbSNP and Humsavar for CAPN10-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000263371 -- 240,584,074(+) CTGGG(G/T)TAGCA nc-transcript-variant
rs1000288221 -- 240,584,222(+) GATCT(C/G)GGCTC nc-transcript-variant
rs1000432931 -- 240,586,873(+) ACCCC(G/T)AGGCA upstream-variant-2KB, utr-variant-5-prime
rs1000593264 -- 240,582,456(+) CACAA(A/T)ACCAC downstream-variant-500B
rs1001460094 -- 240,586,812(+) GGGAA(C/T)GGGCG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CAPN10-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759119 CNV gain 17122850
nsv1001262 CNV gain 25217958
nsv470529 CNV loss 18288195
nsv834586 CNV loss 17160897
nsv955291 CNV deletion 24416366

Relevant External Links for CAPN10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAPN10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CAPN10-AS1 Gene

Disorders for CAPN10-AS1 Gene

Relevant External Links for CAPN10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CAPN10-AS1

No disorders were found for CAPN10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CAPN10-AS1 Gene

Publications for CAPN10-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3 60
  2. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y … Zhang H (Genetic epidemiology 2011) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for CAPN10-AS1 Gene

Sources for CAPN10-AS1 Gene

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