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Aliases & Descriptions for CANX
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CNX 1 , 2 FLJ26570 2 IP90 1 , 2 , 3 P90 1 , 2 calnexin 2 p90 3
Descriptions Major histocompatibility complex class I antigen-binding protein p88 2 , 3
Search outside databases for aliases for CANX genePrevious GC identifers: GC05P179238 GC05P180070 GC05P179190 GC05P179235
Summaries for CANX (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CANX : This gene encodes a member of the calnexin family of molecular chaperones. The encoded protein is acalcium-binding, endoplasmic reticulum (ER)-associated protein that interacts transiently withnewly synthesized N-linked glycoproteins, facilitating protein folding and assembly. It may alsoplay a central role in the quality control of protein folding by retaining incorrectly foldedprotein subunits within the ER for degradation. Alternatively spliced transcript variants encodingthe same protein have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: CALX_HUMAN, P27824 Function : Calcium-binding protein that interacts with newly synthesized glycoproteins in theendoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within theER of unassembled protein subunits. It seems to play a major role in the quality control apparatusof the ER by the retention of incorrectly folded proteins
Gene Wiki entry for CANX (Calnexin)
Genomic Location for CANX
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CANX gene Entrez Gene cytogenetic band: 5q35 Ensembl cytogenetic band: 5q35.3 HGNC cytogenetic band: 5q35 CANX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P179058:
(about GC identifiers )
Start:
179,058,536 bp from pter
End:
179,091,248 bp from pter
Size:
32,713 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_023133.12 Proteins for CANX
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CALX_HUMAN, P27824 (See
protein sequence )Recommended Name: Calnexin precursor Size : 592 amino acids; 67568 Da
Subcellular location : Endoplasmic reticulum membrane; Single-pass type I membrane protein.Melanosome. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001019820.1 NP_001737.1 ENSEMBL proteins: ENSP00000366152 ENSP00000247461 ENSP00000346370 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CANX: Assays for CANX:
Protein
Domains/ Families for CANX(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P27824 ProtoNet protein and cluster: P27824
1 Blocks protein family : IPB001580 Calreticulin UniProtKB/Swiss-Prot: CALX_HUMAN, P27824 Similarity : Belongs to the calreticulin family
Gene Function for CANX
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001024649 Applied Biosystems Silencer ® siRNAs for CANX Sigma-Aldrich siRNA for CANX Sigma-Aldrich shRNA for CANX Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001024649                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001024649                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001024649  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001746 UniProtKB/Swiss-Prot: CALX_HUMAN, P27824 Function : Calcium-binding protein that interacts with newly synthesized glycoproteins in theendoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within theER of unassembled protein subunits. It seems to play a major role in the quality control apparatusof the ER by the retention of incorrectly folded proteins
Genatlas biochemistry entry for CANX :calnexin,90kDa,integral membrane,calcium binding protein,chaperone,interacting with an ER-locatedpeptide transporter for peptide translocation into microsomes
5 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Canx) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CANX
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for CANX (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CANX 5/82 Interacting proteins for CANX (P27824 1 , 2 ENSP00000247461 3 ) via UniProtKB, MINT, and/or STRING (see all 82
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for CANX (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CANX 10/23 Novoseek chemical compound relationships for CANX gene (see all 23
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
dolichyl diphosphate
81.01
1
10794707 (1)
man9(glcnac)2
71.65
1
18524852 (1)
mannose
61.16
9
10801790 (2), 9065464 (1), 10671537 (1), 11278527 (1) (see all 8 )
vtcs
60.73
2
10427085 (1), 15213841 (1)
udpglucose
60.36
10
12181335 (2), 16154739 (1), 17643373 (1), 12671684 (1) (see all 5 )
tetrasaccharide
39.84
1
12706973 (1)
dithiothreitol
36.03
7
11796709 (1), 7729412 (1), 16752927 (1), 7642652 (1) (see all 5 )
mannose 6-phosphate
31.07
1
15757671 (1)
glucose
29.25
39
7499436 (4), 9020131 (4), 12239218 (2), 10504336 (2) (see all 21 )
ryanodine
27.31
2
11580896 (1), 12407053 (1)
About this table
Transcripts for CANX(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001024649 Sigma-Aldrich siRNA for CANX Sigma-Aldrich shRNA for CANX Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001024649 NM_001746
REFSEQ mRNAs for CANX gene (2 alternative transcripts): NM_001024649.1 NM_001746.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001024649 NM_001746
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001024649                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001024649                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001024649  
Additional cDNA sequence: AF070646.1 AJ271880.1 AK129990.1 AK130080.1 AK294702.1 AK304420.1 AK312334.1 BC003552.1 BC042843.1 BC050534.1 BX537700.1 CR609178.1 CR613697.1 L10284.1 L18887.1 M94859.1 M98452.1 S67659.1
24/56 DOTS entries (see all 56
): DT.91889830 DT.97865395 DT.40116945 DT.450755 DT.100887015 DT.97760178 DT.100032450 DT.75101647 DT.91711926 DT.100887002 DT.99960318 DT.120874219 DT.120874237 DT.91949811 DT.95093053 DT.95093098 DT.120874210 DT.120874223 DT.100035034 DT.100886999 DT.100887008 DT.120874153 DT.92027265 DT.92463793
24/1359 AceView cDNA sequences (see all 1359
):BQ015049 BU171327 AA425090 AW612892 AI654260 F04923 BP345481 AA732976 BQ639108 AI560540 AA354980 BM457901 BU172532 F07403 BX476032 AW594012 AL537146 CB137929 M94859 AI803817 AA384195 BP341781 AF070646 AW500108
highest scoring ESTs for CANX :AW006369 L10284 AA054145 AA070640 AA074678 AA112407 AA114030 AA114031 AA114045 AA134159
Unigene Cluster for CANX: Calnexin Hs.699155 [show with all ESTs ] Unigene Representative Sequence: NM_001746 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for CANX (see all 8
) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b ^ 16 ^ SP1 :           -   -   -   -                       -               SP2 :         -   -   -   -   -       -   -   -   -           -               SP3 :                                                     SP4 :           -   -   -   -   -   -   -   -                             SP5 :           -   -   -                                      
ExUns: 17 ^ 18a · 18b ^ 19 ^ 20 SP1 :           SP2 :           SP3 :           SP4 :           SP5 :          
About this scheme ECgene alternative splicing isoforms for CANX 3 Ensembl transcripts including schematic representations : ENST00000376953
ENST00000247461
ENST00000354394
Expression for CANX
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CANX expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CANX 1 / 2 / 3
11 probe-sets matching CANX gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTACTAAATGSOURCE GeneReport for Unigene cluster: Hs.699155 Expression variation in blood from EXPOLDB for CANX
Orthologs for CANX
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CANX gene from 5/23 species (see all 23
)
About this table Species with no ortholog for CANX ENSEMBL Gene Tree for CANX Paralogs for CANX (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CANX gene CLGN 2 CALR 2 CALR3 2
SNPs/Variants for CANX (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CANX (up to first 250kb)
Disorders & Mutations for CANX
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 114217 10/16 Novoseek disease relationships for CANX gene (see all 16
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
cystic fibrosis
41.99
4
7513695 (1), 18716059 (1), 15923638 (1)
albinism
39.29
1
15677452 (1)
influenza
18.81
4
16407314 (1), 9348279 (1), 8534914 (1), 14731400 (1)
shock
17.81
8
16404716 (1), 18230692 (1), 16061483 (1), 9688848 (1) (see all 5 )
mastocytoma
16.96
1
10956670 (1)
melanoma
11.24
7
14732231 (2), 7531726 (2), 10360639 (1), 8219759 (1)
carcinoma
5.00
1
17622526 (1)
necrosis
3.67
1
9135824 (1)
metastasis
3.42
2
14685900 (1)
tumors
3.02
8
10738909 (3), 14732231 (1), 10933198 (1), 17545629 (1) (see all 5 )
About this table Genetic Association Database: CANX
Medical News for CANX (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CANX (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/361 PubMed articles for CANX gene (see all 361
): Human, mouse, and rat calnexin cDNA cloning: identification of potential calcium binding motifs and gene localization to human chromosome 5. (PubMed id 8136357) 1, 2, 3, 4 Tjoelker L.W....Gray P.W. (1994) The major histocompatibility complex class I antigen-binding protein p88 is the product of the calnexin gene. (PubMed id 1326756) 1, 2, 3, 4 Galvin K.... Ozturk M. (1992) The molecular chaperones HSP28, GRP78, endoplasmin, and calnexin exhibit strikingly different levels in quiescent keratinocytes as compared to their proliferating normal and transformed counterparts: cDNA cloning and expression of calnexin. (PubMed id 8055875) 1, 3, 4 Honore B....Celis J.E. (1994) Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. (PubMed id 17081065) 3, 4 Chi A....Hunt D.F. (2006) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 3, 4 Nousiainen M.... Koerner R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Proteomic analysis of early melanosomes: identification of novel melanosomal proteins. (PubMed id 12643545) 3, 4 Basrur V.... Appella E. (2003) Interaction with newly synthesized and retained proteins in the endoplasmic reticulum suggests a chaperone function for human integral membrane protein IP90 (calnexin). (PubMed id 8486646) 3, 4 David V.... Brenner M.B. (1993) Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes. (PubMed id 1286667) 3, 4 Rasmussen H.H....Vandekerckhove J. (1992)
Search for CANX
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Genome Databases showing CANX
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CANX
(According to HUGE )
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Specialized Databases showing CANX (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Wikipedia http://en.wikipedia.org/wiki/Calnexin
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-- Services for CANX (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CANX:
Antibodies & Assays for CANX   (Calnexin)
Search Tocris compounds for CANX
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Aliases for CANX
Databases for CANX
Disorders for CANX
Domains/Families for CANX
Drugs/Compounds for CANX
Expression for CANX
Function for CANX
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Medical News for CANX
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Pathways/Interactions for CANX
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009