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Aliases for CALY Gene

Aliases for CALY Gene

  • Calcyon Neuron Specific Vesicular Protein 2 3 5
  • Dopamine Receptor D1 Interacting Protein 2 3
  • DRD1IP 3 4
  • Calcyon D1 Dopamine Receptor-Interacting Protein (CALCYON) 3
  • Calcyon Neuron-Specific Vesicular Protein 2
  • Neuron-Specific Vesicular Protein Calcyon 3
  • D1 Dopamine Receptor-Interacting Protein 3
  • Calcyon Protein 3
  • NSG3 3

External Ids for CALY Gene

Previous HGNC Symbols for CALY Gene

  • DRD1IP

Previous GeneCards Identifiers for CALY Gene

  • GC10M134989
  • GC10M135138
  • GC10M128683

Summaries for CALY Gene

Entrez Gene Summary for CALY Gene

  • The protein encoded by this gene is a type II single transmembrane protein. It is required for maximal stimulated calcium release after stimulation of purinergic or muscarinic but not beta-adrenergic receptors. The encoded protein interacts with D1 dopamine receptor and may interact with other DA receptor subtypes and/or GPCRs. [provided by RefSeq, Jul 2008]

GeneCards Summary for CALY Gene

CALY (Calcyon Neuron Specific Vesicular Protein) is a Protein Coding gene. Diseases associated with CALY include Attention Deficit-Hyperactivity Disorder and Schizophrenia. Among its related pathways are Circadian entrainment. GO annotations related to this gene include protein complex binding and clathrin light chain binding. An important paralog of this gene is NSG1.

UniProtKB/Swiss-Prot for CALY Gene

  • Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.

Gene Wiki entry for CALY Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALY Gene

Genomics for CALY Gene

Regulatory Elements for CALY Gene

Enhancers for CALY Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F132392 0.9 FANTOM5 Ensembl ENCODE 5.5 +928.6 928569 32.2 HDGF PKNOX1 ARID4B SIN3A YBX1 DMAP1 ZNF207 ZNF548 FOS DEK TUBGCP2 ENSG00000235245 C10orf91 STK32C LOC105378568 PWWP2B LRRC27 LINC01164 CALY DPYSL4
GH10F133336 0.9 ENCODE 0.8 +0.0 20 0.2 KLF1 BMI1 ZFHX2 PATZ1 SCRT2 ZNF600 EZH2 SCRT1 ZNF263 RFX1 CALY GC10M133326
GH10F133334 0.7 ENCODE 0.8 +1.6 1640 1.3 ATF1 KLF17 SIN3A BMI1 GLIS2 ZNF366 KLF7 CREM EGR2 SP3 ECHS1 VENTX MTG1 CALY GC10M133326
GH10F133329 1.4 FANTOM5 Ensembl ENCODE 0.4 +7.1 7069 1.0 WRNIP1 ARID4B ZNF48 ZNF2 ZNF121 GLIS2 ZNF143 KLF7 SP3 REST CFAP46 PRAP1 GC10M133326 CALY
GH10F133325 0.8 ENCODE 0.4 +11.5 11520 0.2 SUZ12 THRB GC10M133326 CALY
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CALY on UCSC Golden Path with GeneCards custom track

Promoters for CALY Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001765553 1671 201 ATF1 SIN3A BMI1 HIC1 GLIS2 PATZ1 KLF7 CREM ZBTB20 RFX1

Genomic Location for CALY Gene

Chromosome:
10
Start:
133,324,072 bp from pter
End:
133,336,971 bp from pter
Size:
12,900 bases
Orientation:
Minus strand

Genomic View for CALY Gene

Genes around CALY on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALY Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALY Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALY Gene

Proteins for CALY Gene

  • Protein details for CALY Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NYX4-CALY_HUMAN
    Recommended name:
    Neuron-specific vesicular protein calcyon
    Protein Accession:
    Q9NYX4
    Secondary Accessions:
    • Q5VWX3
    • Q5VWY5
    • Q5VWY6

    Protein attributes for CALY Gene

    Size:
    217 amino acids
    Molecular mass:
    23434 Da
    Quaternary structure:
    • Interacts with CLTA.

    Alternative splice isoforms for CALY Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CALY Gene

Post-translational modifications for CALY Gene

Other Protein References for CALY Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for CALY

No data available for DME Specific Peptides for CALY Gene

Domains & Families for CALY Gene

Protein Domains for CALY Gene

Suggested Antigen Peptide Sequences for CALY Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NYX4

UniProtKB/Swiss-Prot:

CALY_HUMAN :
  • Belongs to the NSG family.
Family:
  • Belongs to the NSG family.
genes like me logo Genes that share domains with CALY: view

No data available for Gene Families for CALY Gene

Function for CALY Gene

Molecular function for CALY Gene

UniProtKB/Swiss-Prot Function:
Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.

Gene Ontology (GO) - Molecular Function for CALY Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16595675
GO:0032051 clathrin light chain binding IDA 16595675
GO:0032403 protein complex binding IEA --
genes like me logo Genes that share ontologies with CALY: view
genes like me logo Genes that share phenotypes with CALY: view

Animal Models for CALY Gene

MGI Knock Outs for CALY:

Animal Model Products

miRNA for CALY Gene

miRTarBase miRNAs that target CALY

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CALY Gene

Localization for CALY Gene

Subcellular locations from UniProtKB/Swiss-Prot for CALY Gene

Cytoplasmic vesicle membrane; Single-pass membrane protein. Cell membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CALY Gene COMPARTMENTS Subcellular localization image for CALY gene
Compartment Confidence
plasma membrane 5
cytosol 1
extracellular 1
golgi apparatus 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CALY Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005768 endosome IBA --
GO:0005887 integral component of plasma membrane IDA 14534309
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0030659 cytoplasmic vesicle membrane IEA --
genes like me logo Genes that share ontologies with CALY: view

Pathways & Interactions for CALY Gene

SuperPathways for CALY Gene

SuperPathway Contained pathways
1 Circadian entrainment
genes like me logo Genes that share pathways with CALY: view

Pathways by source for CALY Gene

1 KEGG pathway for CALY Gene

Interacting Proteins for CALY Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000252939%0d%0a9606.ENSP00000306129%0d%0a9606.ENSP00000327652%0d%0a
Selected Interacting proteins: Q9NYX4-CALY_HUMAN ENSP00000252939 for CALY Gene via IID UniProtKB STRING

Gene Ontology (GO) - Biological Process for CALY Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006897 endocytosis IEA --
GO:0007212 dopamine receptor signaling pathway IEA --
GO:0016197 endosomal transport IBA --
GO:0045807 positive regulation of endocytosis IMP 16595675
GO:0048268 clathrin coat assembly IDA 16595675
genes like me logo Genes that share ontologies with CALY: view

No data available for SIGNOR curated interactions for CALY Gene

Drugs & Compounds for CALY Gene

(7) Drugs for CALY Gene - From: DrugBank, DGIdb, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Apomorphine Approved, Investigational Pharma Partial agonist, Agonist, agonist, Target 37
Trifluoperazine Approved Pharma Antagonist, inhibitor, Target, antagonist 5
Clozapine Approved Pharma Antagonist, Target, unknown Antipsychotic medication 114
Dopamine Approved Pharma Full agonist, Agonist 3759
ADX-10061 Investigational Pharma Target 0
genes like me logo Genes that share compounds with CALY: view

Transcripts for CALY Gene

Unigene Clusters for CALY Gene

Calcyon neuron-specific vesicular protein:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALY Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7
SP1: - - -
SP2: -
SP3: -
SP4:
SP5:

Relevant External Links for CALY Gene

GeneLoc Exon Structure for
CALY
ECgene alternative splicing isoforms for
CALY

Expression for CALY Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CALY Gene

mRNA differential expression in normal tissues according to GTEx for CALY Gene

This gene is overexpressed in Brain - Hypothalamus (x9.4), Pituitary (x5.8), Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Frontal Cortex (BA9) (x4.1), and Brain - Cortex (x4.1).

Protein differential expression in normal tissues from HIPED for CALY Gene

This gene is overexpressed in Cerebrospinal fluid (44.3) and Plasma (21.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CALY Gene



Protein tissue co-expression partners for CALY Gene

NURSA nuclear receptor signaling pathways regulating expression of CALY Gene:

CALY

SOURCE GeneReport for Unigene cluster for CALY Gene:

Hs.148680

mRNA Expression by UniProt/SwissProt for CALY Gene:

Q9NYX4-CALY_HUMAN
Tissue specificity: Expressed in the pyramidal cells of the prefrontal cortex, in hippothalamus and in caudate nucleus. No expression in spleen. Up-regulated in the prefrontal cortex of schizophrenic patients with nearly twice the levels of non-schizophrenics.
genes like me logo Genes that share expression patterns with CALY: view

Primer Products

Orthologs for CALY Gene

This gene was present in the common ancestor of mammals.

Orthologs for CALY Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CALY 34 35
  • 99.15 (n)
dog
(Canis familiaris)
Mammalia CALY 34 35
  • 89.32 (n)
mouse
(Mus musculus)
Mammalia Caly 34 16 35
  • 85.74 (n)
rat
(Rattus norvegicus)
Mammalia Caly 34
  • 85.13 (n)
cow
(Bos Taurus)
Mammalia CALY 34 35
  • 79.3 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 37 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 36 (a)
ManyToMany
Species where no ortholog for CALY was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CALY Gene

ENSEMBL:
Gene Tree for CALY (if available)
TreeFam:
Gene Tree for CALY (if available)

Paralogs for CALY Gene

Paralogs for CALY Gene

(4) SIMAP similar genes for CALY Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CALY: view

Variants for CALY Gene

Sequence variations from dbSNP and Humsavar for CALY Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10745293 -- 133,332,317(+) GAGCA(A/G)TGAGC intron-variant
rs10857701 -- 133,331,568(+) AGCTG(A/T)GGAGC intron-variant
rs10857702 -- 133,331,883(+) CAACA(A/C)TTTGG intron-variant
rs11101694 -- 133,333,210(+) CTGCG(C/T)GGAGG intron-variant, utr-variant-5-prime
rs11101695 -- 133,333,253(+) ATGAT(C/T)GCAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CALY Gene

Variant ID Type Subtype PubMed ID
dgv122n27 CNV loss 19166990
dgv1475n54 CNV loss 21841781
dgv2e196 CNV duplication 17116639
dgv3e196 CNV duplication 17116639
esv2750853 CNV gain 17911159
esv2759793 CNV gain+loss 17122850
esv3625030 CNV gain 21293372
esv3625042 CNV gain 21293372
esv3625043 CNV gain 21293372
esv3891901 CNV loss 25118596
nsv1037772 CNV gain 25217958
nsv1040726 CNV loss 25217958
nsv1052904 CNV gain 25217958
nsv1159786 CNV deletion 26073780
nsv428243 CNV gain 18775914
nsv467509 CNV loss 19166990
nsv470980 CNV loss 18288195
nsv528260 CNV loss 19592680
nsv552589 CNV gain 21841781
nsv552644 CNV loss 21841781
nsv825672 CNV gain 20364138
nsv832036 CNV loss 17160897
nsv832040 CNV loss 17160897
nsv8751 CNV gain 18304495
nsv952707 CNV deletion 24416366

Variation tolerance for CALY Gene

Gene Damage Index Score: 2.90; 48.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CALY Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALY

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALY Gene

Disorders for CALY Gene

MalaCards: The human disease database

(2) MalaCards diseases for CALY Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
attention deficit-hyperactivity disorder
  • attention deficit hyperactivity disorder
schizophrenia
  • schizophrenia 12
- elite association - COSMIC cancer census association via MalaCards
Search CALY in MalaCards View complete list of genes associated with diseases

Relevant External Links for CALY

Genetic Association Database (GAD)
CALY
Human Genome Epidemiology (HuGE) Navigator
CALY
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALY
genes like me logo Genes that share disorders with CALY: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CALY Gene

Publications for CALY Gene

  1. Dual signaling regulated by calcyon, a D1 dopamine receptor interacting protein. (PMID: 10698743) Lezcano N. … Bergson C. (Science 2000) 2 4 22 64
  2. Candidate gene analysis in an on-going genome-wide association study of attention-deficit hyperactivity disorder: suggestive association signals in ADRA1A. (PMID: 19352218) Elia J. … Hakonarson H. (Psychiatr. Genet. 2009) 3 46 64
  3. Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD. (PMID: 17623072) Heijtz R.D. … Castellanos F.X. (Behav Brain Funct 2007) 2 3 64
  4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 46 64
  5. Calcyon, a novel partner of clathrin light chain, stimulates clathrin-mediated endocytosis. (PMID: 16595675) Xiao J. … Bergson C. (J. Biol. Chem. 2006) 3 4 64

Products for CALY Gene

Sources for CALY Gene

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