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Aliases for CALU Gene

Aliases for CALU Gene

  • Calumenin 2 3 3 5
  • IEF SSP 9302 3 4
  • Multiple EF-Hand Protein 3
  • Crocalbin-Like Protein 3
  • Crocalbin 4

External Ids for CALU Gene

Previous GeneCards Identifiers for CALU Gene

  • GC07P126856
  • GC07P127919
  • GC07P127933
  • GC07P127973
  • GC07P128166
  • GC07P128380
  • GC07P122740
  • GC07P128381
  • GC07P128438
  • GC07P128497

Summaries for CALU Gene

Entrez Gene Summary for CALU Gene

  • The product of this gene is a calcium-binding protein localized in the endoplasmic reticulum (ER) and it is involved in such ER functions as protein folding and sorting. This protein belongs to a family of multiple EF-hand proteins (CERC) that include reticulocalbin, ERC-55, and Cab45 and the product of this gene. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Oct 2008]

GeneCards Summary for CALU Gene

CALU (Calumenin) is a Protein Coding gene. Among its related pathways are Ca, cAMP and Lipid Signaling and Response to elevated platelet cytosolic Ca2+. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is RCN1.

UniProtKB/Swiss-Prot for CALU Gene

  • Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma-carboxylase GGCX. Binds 7 calcium ions with a low affinity (By similarity).

Gene Wiki entry for CALU Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALU Gene

Genomics for CALU Gene

Regulatory Elements for CALU Gene

Enhancers for CALU Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F128737 0.9 Ensembl ENCODE 15.3 +1.4 1411 6.6 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 OPN1SW FAM71F2 ENSG00000242162 CYCSP20 LOC100196944 ENSG00000243230 CALU SMO ENSG00000243679 ENSG00000230715
GH07F128754 0.2 ENCODE 12.2 +16.7 16667 3.2 CTCF ZNF362 SIN3A HIC1 JUND ZNF316 POLR2A FOS FOXP2 OPN1SW CALU CCDC136 IMP3P2 FAM71F2 ENSG00000241493 FLNC FAM71F1 RN7SL81P
GH07F128767 0.7 ENCODE 11.6 +28.6 28599 0.1 ZBTB8A ZBTB7A ZFHX2 IKZF1 PATZ1 ZNF341 WT1 ZBTB20 EGR2 ZBTB17 CCDC136 CALU IMP3P2 ENSG00000241493 FAM71F2 GC07P128826 GC07P128847 RN7SL81P
GH07F128714 0.6 Ensembl 11.3 -24.2 -24192 0.6 MCM3 IKZF1 ATF2 SPI1 METTL2B IMP3P2 FAM71F2 ENSG00000241493 CALU OPN1SW CCDC136 GC07M128710
GH07F128705 0.2 Ensembl 10.2 -33.2 -33192 0.6 JUND ATF3 IKZF1 ZEB2 FOS PRDM1 SPI1 NR2F2 CICP14 FAM71F2 ENSG00000241493 CCDC136 OPN1SW CALU FAM71F1 RNA5SP243
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CALU on UCSC Golden Path with GeneCards custom track

Promoters for CALU Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000069024 1008 3401 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for CALU Gene

Chromosome:
7
Start:
128,739,292 bp from pter
End:
128,773,423 bp from pter
Size:
34,132 bases
Orientation:
Plus strand

Genomic View for CALU Gene

Genes around CALU on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALU Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALU Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALU Gene

Proteins for CALU Gene

neXtProt entry for CALU Gene

Post-translational modifications for CALU Gene

  • Ubiquitination at Lys 84, Lys 94, Lys 98, Lys 114, Lys 255, and Lys 94
  • Glycosylation at Thr 60, Asn 131, and Ser 261
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for CALU (CALU)

No data available for DME Specific Peptides for CALU Gene

Domains & Families for CALU Gene

Gene Families for CALU Gene

Protein Domains for CALU Gene

Graphical View of Domain Structure for InterPro Entry

O43852

UniProtKB/Swiss-Prot:

CALU_HUMAN :
  • Contains 6 EF-hand domains.
  • Belongs to the CREC family.
Domain:
  • Contains 6 EF-hand domains.
Family:
  • Belongs to the CREC family.
genes like me logo Genes that share domains with CALU: view

Function for CALU Gene

Molecular function for CALU Gene

GENATLAS Biochemistry:
calumenin CA++ binding proteins in the ER and Golgi apparatus,EF hand subfamily,ubiquitously expressed (heart,placenta,skeletal muscle)
UniProtKB/Swiss-Prot Function:
Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma-carboxylase GGCX. Binds 7 calcium ions with a low affinity (By similarity).

Gene Ontology (GO) - Molecular Function for CALU Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IDA 10094503
GO:0005515 protein binding IPI 18688696
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CALU: view
genes like me logo Genes that share phenotypes with CALU: view

Animal Model Products

miRNA for CALU Gene

miRTarBase miRNAs that target CALU

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CALU Gene

Localization for CALU Gene

Subcellular locations from UniProtKB/Swiss-Prot for CALU Gene

Endoplasmic reticulum membrane. Golgi apparatus. Secreted. Melanosome. Sarcoplasmic reticulum lumen. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV. {ECO:0000269 PubMed:12643545}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CALU Gene COMPARTMENTS Subcellular localization image for CALU gene
Compartment Confidence
endoplasmic reticulum 5
golgi apparatus 5
extracellular 4
cytoskeleton 1
lysosome 1
peroxisome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for CALU Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005783 endoplasmic reticulum IEA,IDA --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0005794 Golgi apparatus IEA --
GO:0016020 membrane IEA,IDA 19946888
genes like me logo Genes that share ontologies with CALU: view

Pathways & Interactions for CALU Gene

genes like me logo Genes that share pathways with CALU: view

Pathways by source for CALU Gene

1 PharmGKB pathway for CALU Gene

Gene Ontology (GO) - Biological Process for CALU Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with CALU: view

No data available for SIGNOR curated interactions for CALU Gene

Drugs & Compounds for CALU Gene

(2) Drugs for CALU Gene - From: PharmGKB, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Warfarin Approved Pharma 454
calcium Nutra 0
genes like me logo Genes that share compounds with CALU: view

Transcripts for CALU Gene

Unigene Clusters for CALU Gene

Calumenin:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALU Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c
SP1: - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - - - - - - - -
SP5: - - - - - - - - - - -
SP6: - - - - - - - - - - -
SP7: - - - - - -
SP8: - -
SP9: - - - - - - - -
SP10: - - - - - - -
SP11: - - -
SP12:
SP13: - -

Relevant External Links for CALU Gene

GeneLoc Exon Structure for
CALU
ECgene alternative splicing isoforms for
CALU

Expression for CALU Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CALU Gene

Protein differential expression in normal tissues from HIPED for CALU Gene

This gene is overexpressed in Bone marrow stromal cell (20.7), Amniocyte (15.3), and Oral epithelium (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CALU Gene



Protein tissue co-expression partners for CALU Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CALU Gene:

CALU

SOURCE GeneReport for Unigene cluster for CALU Gene:

Hs.743262

mRNA Expression by UniProt/SwissProt for CALU Gene:

O43852-CALU_HUMAN
Tissue specificity: Ubiquitously expressed. Expressed at high levels in heart, placenta and skeletal muscle, at lower levels in lung, kidney and pancreas and at very low levels in brain and liver.
genes like me logo Genes that share expression patterns with CALU: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for CALU Gene

Orthologs for CALU Gene

This gene was present in the common ancestor of animals.

Orthologs for CALU Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CALU 34 35
  • 100 (n)
oppossum
(Monodelphis domestica)
Mammalia CALU 35
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CALU 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CALU 34 35
  • 89.42 (n)
cow
(Bos Taurus)
Mammalia CALU 34 35
  • 88.68 (n)
mouse
(Mus musculus)
Mammalia Calu 34 16 35
  • 87.94 (n)
rat
(Rattus norvegicus)
Mammalia Calu 34
  • 86.24 (n)
lizard
(Anolis carolinensis)
Reptilia CALU 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia calu 34
  • 79.05 (n)
Str.11110 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.33451 34
zebrafish
(Danio rerio)
Actinopterygii calua 34 35
  • 73.02 (n)
zgc63741 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.458 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010392 34
  • 59.17 (n)
fruit fly
(Drosophila melanogaster)
Insecta scf 36 34 35
  • 57.1 (n)
CG9112 36
  • 36 (a)
worm
(Caenorhabditis elegans)
Secernentea calu-1 34 35
  • 54 (n)
M03F4.7 36
  • 50 (a)
F08B6.3 36
  • 30 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 57 (a)
ManyToMany
CSA.6945 35
  • 47 (a)
ManyToMany
-- 35
  • 46 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.10829 34
Species where no ortholog for CALU was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CALU Gene

ENSEMBL:
Gene Tree for CALU (if available)
TreeFam:
Gene Tree for CALU (if available)

Paralogs for CALU Gene

Paralogs for CALU Gene

(3) SIMAP similar genes for CALU Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CALU: view

Variants for CALU Gene

Sequence variations from dbSNP and Humsavar for CALU Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs339097 drug-response 128,759,170(-) ACTTA(C/T)ATAGC intron-variant
rs104894033 Pathogenic 128,773,786(-) ACGTG(C/T)CCTAC downstream-variant-500B, reference, missense
rs1006023 -- 128,749,500(+) AGCCT(G/T)CCTTT intron-variant
rs1006024 -- 128,749,505(+) TCCTT(C/T)TGAAG intron-variant
rs10215105 -- 128,764,375(+) gcacc(A/G/T)ttatt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CALU Gene

Variant ID Type Subtype PubMed ID
esv2670312 CNV deletion 23128226
esv2735137 CNV deletion 23290073
esv3614987 CNV loss 21293372
nsv831125 CNV loss 17160897

Variation tolerance for CALU Gene

Residual Variation Intolerance Score: 24.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.77; 83.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CALU Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALU

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALU Gene

Disorders for CALU Gene

Relevant External Links for CALU

Genetic Association Database (GAD)
CALU
Human Genome Epidemiology (HuGE) Navigator
CALU
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALU

No disorders were found for CALU Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALU Gene

Publications for CALU Gene

  1. Human calumenin gene (CALU): cDNA isolation and chromosomal mapping to 7q32. (PMID: 9598325) Yabe D. … Honjo T. (Genomics 1998) 2 3 4 22 64
  2. Genetic determinants of acenocoumarol and phenprocoumon maintenance dose requirements. (PMID: 20020283) Cadamuro J. … Oberkofler H. (Eur. J. Clin. Pharmacol. 2010) 3 22 46 64
  3. Genetic determinants of warfarin dosing in the Han-Chinese population. (PMID: 19958090) Lee M.T. … Chen Y.T. (Pharmacogenomics 2009) 3 22 46 64
  4. Association of warfarin dose with genes involved in its action and metabolism. (PMID: 17048007) Wadelius M. … Deloukas P. (Hum. Genet. 2007) 3 22 46 64
  5. Genotypes of vitamin K epoxide reductase, gamma-glutamyl carboxylase, and cytochrome P450 2C9 as determinants of daily warfarin dose in Japanese patients. (PMID: 17049586) Kimura R. … Miyata T. (Thromb. Res. 2007) 3 22 46 64

Products for CALU Gene

Sources for CALU Gene

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