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Aliases for CALR4P Gene

Aliases for CALR4P Gene

  • Calreticulin 4, Pseudogene 2 3 5

External Ids for CALR4P Gene

Previous GeneCards Identifiers for CALR4P Gene

  • GC01M052016
  • GC01P052020

Summaries for CALR4P Gene

GeneCards Summary for CALR4P Gene

CALR4P (Calreticulin 4, Pseudogene) is a Pseudogene.

Additional gene information for CALR4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALR4P Gene

Genomics for CALR4P Gene

GeneHancer (GH) Regulatory Elements for CALR4P Gene

Promoters and enhancers for CALR4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I051592 Enhancer 0.3 ENCODE 550.8 +2.0 1973 0.1 MZF1 CALR4P GC01P051592 OSBPL9 LOC105378720
GH01I051563 Enhancer 1.4 Ensembl ENCODE dbSUPER 8 +26.9 26879 9.3 HNRNPUL1 ATF1 PKNOX1 NEUROD1 SIN3A ATF7 FOS RUNX3 JUNB REST NRDC RNU6-1281P ENSG00000266993 CDKN2C ENSG00000227070 EPS15 RNU6-877P CALR4P OSBPL9 GC01P051545
GH01I051557 Enhancer 1.2 Ensembl ENCODE dbSUPER 7.7 +36.4 36397 2.2 NFIB ZSCAN4 NEUROD1 BATF ZNF335 EGR1 RCOR1 FOS USF2 JUNB CALR4P GC01P051545 OSBPL9 ENSG00000227070 LOC105378720
GH01I051583 Enhancer 0.7 Ensembl ENCODE 11.3 +11.1 11136 1.2 JUND GATA3 ZNF24 ZBTB17 CALR4P OSBPL9 GC01P051592 LOC105378720
GH01I051534 Enhancer 1.2 Ensembl ENCODE dbSUPER 6.1 +59.9 59880 1.4 RB1 ARNT ZNF2 RAD21 RFX5 CHAMP1 ARID2 ZNF143 BCLAF1 RUNX3 EPS15 CALR4P RNU6-1281P GC01P051530 LOC105378720 ENSG00000227070
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CALR4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CALR4P Gene

Genomic Locations for CALR4P Gene
chr1:51,554,728-51,594,897
(GRCh38/hg38)
Size:
40,170 bases
Orientation:
Minus strand
chr1:52,020,400-52,060,569
(GRCh37/hg19)

Genomic View for CALR4P Gene

Genes around CALR4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALR4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALR4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALR4P Gene

Proteins for CALR4P Gene

Post-translational modifications for CALR4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALR4P Gene

Domains & Families for CALR4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CALR4P Gene

Function for CALR4P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALR4P Gene

Localization for CALR4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CALR4P Gene

Pathways & Interactions for CALR4P Gene

SuperPathways for CALR4P Gene

No Data Available

Interacting Proteins for CALR4P Gene

Gene Ontology (GO) - Biological Process for CALR4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CALR4P Gene

Drugs & Compounds for CALR4P Gene

No Compound Related Data Available

Transcripts for CALR4P Gene

mRNA/cDNA for CALR4P Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALR4P Gene

No ASD Table

Relevant External Links for CALR4P Gene

GeneLoc Exon Structure for
CALR4P
ECgene alternative splicing isoforms for
CALR4P

Expression for CALR4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CALR4P Gene

mRNA differential expression in normal tissues according to GTEx for CALR4P Gene

This gene is overexpressed in Adrenal Gland (x18.5) and Testis (x7.4).

NURSA nuclear receptor signaling pathways regulating expression of CALR4P Gene:

CALR4P
genes like me logo Genes that share expression patterns with CALR4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALR4P Gene

Orthologs for CALR4P Gene

Evolution for CALR4P Gene

ENSEMBL:
Gene Tree for CALR4P (if available)
TreeFam:
Gene Tree for CALR4P (if available)

No data available for Orthologs for CALR4P Gene

Paralogs for CALR4P Gene

No data available for Paralogs for CALR4P Gene

Variants for CALR4P Gene

Additional Variant Information for CALR4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALR4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CALR4P Gene

Disorders for CALR4P Gene

No disorders were found for CALR4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CALR4P Gene

Publications for CALR4P Gene

  1. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 2 3 58

Products for CALR4P Gene

Sources for CALR4P Gene

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