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Aliases for CALN1 Gene

Aliases for CALN1 Gene

  • Calneuron 1 2 3
  • Calcium-Binding Protein CABP8 2 3
  • Calneuron I 3 4
  • Calneuron-1 3 4
  • CABP8 3 4
  • Calcium-Binding Protein 8 3

External Ids for CALN1 Gene

Previous GeneCards Identifiers for CALN1 Gene

  • GC07M069888
  • GC07M070646
  • GC07M070660
  • GC07M070692
  • GC07M070885
  • GC07M071244
  • GC07M067413

Summaries for CALN1 Gene

Entrez Gene Summary for CALN1 Gene

  • This gene encodes a protein with high similarity to the calcium-binding proteins of the calmodulin family. The encoded protein contains two EF-hand domains and potential calcium-binding sites. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2008]

GeneCards Summary for CALN1 Gene

CALN1 (Calneuron 1) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CABP7.

UniProtKB/Swiss-Prot for CALN1 Gene

  • Negatively regulates Golgi-to-plasma membrane trafficking by interacting with PI4KB and inhibiting its activity (By similarity). May play a role in the physiology of neurons and is potentially important in memory and learning.

Gene Wiki entry for CALN1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALN1 Gene

Genomics for CALN1 Gene

Regulatory Elements for CALN1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CALN1 Gene

Start:
71,779,491 bp from pter
End:
72,447,151 bp from pter
Size:
667,661 bases
Orientation:
Minus strand

Genomic View for CALN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CALN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALN1 Gene

Proteins for CALN1 Gene

  • Protein details for CALN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXU9-CABP8_HUMAN
    Recommended name:
    Calcium-binding protein 8
    Protein Accession:
    Q9BXU9
    Secondary Accessions:
    • J3KQA7

    Protein attributes for CALN1 Gene

    Size:
    219 amino acids
    Molecular mass:
    24837 Da
    Quaternary structure:
    • Interacts with PI4KB. This binding competes with FREQ/NCS1 binding in a calcium-dependent manner (By similarity).
    SequenceCaution:
    • Sequence=AAG09620.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CALN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CALN1 Gene

Proteomics data for CALN1 Gene at MOPED

Post-translational modifications for CALN1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CALN1 Gene

No data available for DME Specific Peptides for CALN1 Gene

Domains for CALN1 Gene

Gene Families for CALN1 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for CALN1 Gene

Suggested Antigen Peptide Sequences for CALN1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BXU9

UniProtKB/Swiss-Prot:

CABP8_HUMAN :
  • Q9BXU9
Domain:
  • The C-terminal transmembrane domain (TMD) is necessary and sufficient for membrane targeting
  • Contains 2 EF-hand domains.
genes like me logo Genes that share domains with CALN1: view

Function for CALN1 Gene

Molecular function for CALN1 Gene

UniProtKB/Swiss-Prot Function: Negatively regulates Golgi-to-plasma membrane trafficking by interacting with PI4KB and inhibiting its activity (By similarity). May play a role in the physiology of neurons and is potentially important in memory and learning.

Gene Ontology (GO) - Molecular Function for CALN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
genes like me logo Genes that share ontologies with CALN1: view

Phenotypes for CALN1 Gene

GenomeRNAi human phenotypes for CALN1:
genes like me logo Genes that share phenotypes with CALN1: view

Animal Model Products

CRISPR Products

miRNA for CALN1 Gene

miRTarBase miRNAs that target CALN1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CALN1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for CALN1 Gene

Localization for CALN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CALN1 Gene

Golgi apparatus, trans-Golgi network membrane; Single-pass type IV membrane protein. Cytoplasm, perinuclear region. Cell membrane; Single-pass type IV membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CALN1 Gene COMPARTMENTS Subcellular localization image for CALN1 gene
Compartment Confidence
plasma membrane 5
cytosol 3
golgi apparatus 3
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CALN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0032588 trans-Golgi network membrane IDA 19338761
GO:0048471 perinuclear region of cytoplasm IEA --
genes like me logo Genes that share ontologies with CALN1: view

Pathways for CALN1 Gene

SuperPathways for CALN1 Gene

No Data Available

Interacting Proteins for CALN1 Gene

Gene Ontology (GO) - Biological Process for CALN1 Gene

None

No data available for Pathways by source for CALN1 Gene

Transcripts for CALN1 Gene

mRNA/cDNA for CALN1 Gene

(9) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CALN1 Gene

Calneuron 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CALN1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALN1 Gene

No ASD Table

Relevant External Links for CALN1 Gene

GeneLoc Exon Structure for
CALN1
ECgene alternative splicing isoforms for
CALN1

Expression for CALN1 Gene

mRNA expression in normal human tissues for CALN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CALN1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (11.1), Brain - Cerebellum (8.5), and Brain - Nucleus accumbens (basal ganglia) (4.4).

SOURCE GeneReport for Unigene cluster for CALN1 Gene Hs.592750

mRNA Expression by UniProt/SwissProt for CALN1 Gene

Q9BXU9-CABP8_HUMAN
Tissue specificity: Brain specific
genes like me logo Genes that share expressions with CALN1: view

In Situ Assay Products

No data available for Protein expression for CALN1 Gene

Orthologs for CALN1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CALN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CALN1 35
  • 99.49 (n)
  • 100 (a)
CALN1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CALN1 35
  • 93.23 (n)
  • 97.7 (a)
CALN1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CALN1 35
  • 91.32 (n)
  • 96.93 (a)
CALN1 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Caln1 35
  • 89.27 (n)
  • 95.79 (a)
Caln1 16
Caln1 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CALN1 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CALN1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Caln1 35
  • 88.25 (n)
  • 95.79 (a)
chicken
(Gallus gallus)
Aves CALN1 35
  • 84.97 (n)
  • 91.37 (a)
CALN1 36
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CALN1 36
  • 99 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia caln1 35
  • 79.45 (n)
  • 98.17 (a)
zebrafish
(Danio rerio)
Actinopterygii CALN1 (2 of 2) 36
  • 80 (a)
OneToMany
caln2 36
  • 88 (a)
OneToMany
LOC562420 35
  • 80.56 (n)
  • 91.67 (a)
Species with no ortholog for CALN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CALN1 Gene

ENSEMBL:
Gene Tree for CALN1 (if available)
TreeFam:
Gene Tree for CALN1 (if available)

Paralogs for CALN1 Gene

Paralogs for CALN1 Gene

genes like me logo Genes that share paralogs with CALN1: view

Variants for CALN1 Gene

Sequence variations from dbSNP and Humsavar for CALN1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs6488 -- 72,138,560(-) GGCAG(-/AG)TCCCC intron-variant
rs472164 -- 72,264,713(+) tacac(A/G)tgcag intron-variant
rs472393 -- 72,248,750(+) GGGGG(A/G)TATCT intron-variant
rs472884 -- 72,233,779(-) ttatc(C/T)gcctg intron-variant
rs473176 -- 72,248,820(+) ATCTA(A/G)ATTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CALN1 Gene

Variant ID Type Subtype PubMed ID
nsv516049 CNV Gain 19592680
esv2734655 CNV Deletion 23290073
esv2671768 CNV Deletion 23128226
dgv7321n71 CNV Loss 21882294
nsv831023 CNV Loss 17160897
nsv527501 CNV Loss 19592680
nsv831024 CNV Loss 17160897
esv24358 CNV Loss 19812545
nsv524800 CNV Loss 19592680
esv1045517 CNV Deletion 17803354
esv2662393 CNV Deletion 23128226
esv2676220 CNV Deletion 23128226
nsv470299 CNV Loss 18288195
nsv464556 CNV Loss 19166990
esv2660292 CNV Deletion 23128226
esv271962 CNV Insertion 20981092
nsv428170 CNV Loss 18775914
nsv528974 CNV Loss 19592680
esv2664115 CNV Deletion 23128226
nsv517305 CNV Loss 19592680

Relevant External Links for CALN1 Gene

HapMap Linkage Disequilibrium report
CALN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALN1 Gene

Disorders for CALN1 Gene

(2) University of Copenhagen DISEASES for CALN1 Gene

Relevant External Links for CALN1

Genetic Association Database (GAD)
CALN1
Human Genome Epidemiology (HuGE) Navigator
CALN1
genes like me logo Genes that share disorders with CALN1: view

No data available for UniProtKB/Swiss-Prot for CALN1 Gene

Publications for CALN1 Gene

  1. Identification of a human brain-specific gene, calneuron 1, a new member of the calmodulin superfamily. (PMID: 11286509) Wu Y.-Q. … Shaffer L.G. (Mol. Genet. Metab. 2001) 2 3 4 23
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Membrane targeting of the EF-hand containing calcium-sensing proteins CaBP7 and CaBP8. (PMID: 19338761) McCue H.V. … Haynes L.P. (Biochem. Biophys. Res. Commun. 2009) 3 4
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48

Products for CALN1 Gene

Sources for CALN1 Gene

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