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CALML6 Gene

protein-coding   GIFtS: 48
GCID: GC01P001880

Calmodulin-Like 6

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Calmodulin-Like 61 2
CAGLP2 3 5
Calglandulin-Like Protein2 3
Calmodulin-Like Protein 62
EF-Hand Protein2
CALGP3

External Ids:    HGNC: 241931   Entrez Gene: 1636882   Ensembl: ENSG000001698857   OMIM: 6101715   UniProtKB: Q8TD863   

Export aliases for CALML6 gene to outside databases

Previous GC identifer: GC01P001126


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CALML6 Gene:
CALML6 (calmodulin-like 6) is a protein-coding gene. Diseases associated with CALML6 include pertussis, and tuberculosis. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CALML3.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000001.11  NT_032977.10  NC_018912.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the CALML6 gene promoter:
         Ik-2   Sp1   AP-1   ATF-2   Lmo2   c-Jun   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCALML6 promoter sequence
   Search Chromatin IP Primers for CALML6

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CALML6


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.33   Ensembl cytogenetic band:  1p36.33   HGNC cytogenetic band: 1p36.33

CALML6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CALML6 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P001880:  view genomic region     (about GC identifiers)

Start:
1,846,266 bp from pter      End:
1,848,735 bp from pter
Size:
2,470 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: CALL6_HUMAN, Q8TD86 (See protein sequence)
Recommended Name: Calmodulin-like protein 6  
Size: 181 amino acids; 20690 Da
Secondary accessions: A2A2M3 Q6Q2C4

Explore the universe of human proteins at neXtProt for CALML6: NX_Q8TD86

Explore proteomics data for CALML6 at MOPED


See CALML6 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_619650.2  
ENSEMBL proteins: 
 ENSP00000304643   ENSP00000367867  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
EFHAND: EF-hand domain containing

3 InterPro protein domains:
 IPR011992 EF-hand-dom_pair
 IPR002048 EF_hand_dom
 IPR018247 EF_Hand_1_Ca_BS

Graphical View of Domain Structure for InterPro Entry Q8TD86

ProtoNet protein and cluster: Q8TD86

UniProtKB/Swiss-Prot: CALL6_HUMAN, Q8TD86
Similarity: Belongs to the calmodulin family. Calglandulin subfamily
Similarity: Contains 4 EF-hand domains


CALML6 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005509calcium ion binding IEA--
     
CALML6 for ontologies           About GeneDecksing


Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CALML6
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hsa-mir-335-5p (MIRT018326)

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
CALL6_HUMAN, Q8TD86: Cytoplasm. Nucleus
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
cytosol3
extracellular1

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--
GO:0005737cytoplasm IEA--
GO:0043231intracellular membrane-bounded organelle ----

CALML6 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for CALML6 About   (see all 21)                                                                                              See pathways by source

SuperPathContained pathways About
1Development Endothelin 1 EDNRA signaling
GnRH signaling pathway0.38
Estrogen signaling pathway0.34
Inflammatory mediator regulation of TRP channels0.37
2Circadian entrainment
Circadian entrainment0.40
Dopaminergic synapse0.37
3Ras signaling pathway
Rap1 signaling pathway0.36
Ras signaling pathway0.36
4Salivary secretion
Salivary secretion0.34
Gastric acid secretion0.34
5Oxytocin signaling pathway
Oxytocin signaling pathway0.32
Vascular smooth muscle contraction0.32

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



Selected Kegg Pathways  (Kegg details for CALML6) (see all 27):
    Ras signaling pathway
Rap1 signaling pathway
Calcium signaling pathway
Phosphatidylinositol signaling system
Oocyte meiosis


CALML6 for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CALML6
Interactions:

    Search GeneGlobe Interaction Network for CALML6

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for CALML6 (Q8TD863 ENSP000003046434) via UniProtKB, MINT, STRING, and/or I2D (see all 63)
InteractantInteraction Details
GeneCardExternal ID(s)
APPBP2Q926243I2D: score=1 
TRIP13Q156453I2D: score=1 
ITPR1ENSP000004059344STRING: ENSP00000405934
ITPR2ENSP000003707444STRING: ENSP00000370744
ITPR3ENSP000003634354STRING: ENSP00000363435
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for CALML6 (CALL6)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for CALML6 gene: 
NM_138705.2  

Unigene Cluster for CALML6:

Calmodulin-like 6
Hs.85902  [show with all ESTs]
Unigene Representative Sequence: AY566229
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000307786(uc001aih.1) ENST00000378604 ENST00000482402 ENST00000462293

miRNA
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CALML6
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Additional mRNA sequence: 

AF490905.2 AY566229.1 

4 DOTS entries:

DT.97820337  DT.100009121  DT.405397  DT.97834909 

15 AceView cDNA sequences:

NM_138705 AF490905 AY566229 BM765861 BQ950729 BM772479 BM717980 BM680440 
BX117933 BC053567 BM765642 BM765652 AA190573 AA993055 AA193687 

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for CALML6    About this scheme

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1:                                                
SP2:              -                                 


ECgene alternative splicing isoforms for CALML6

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CALML6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
CALML6 Expression
About this image

CALML6 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

CALML6 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.85902

UniProtKB/Swiss-Prot: CALL6_HUMAN, Q8TD86
Tissue specificity: Expressed in prostate, thymus, heart, skeleton muscle, bone marrow and ovary

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CALML6

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for CALML6 gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
dog
(Canis familiaris)
Mammalia CALML61 calmodulin-like 6 85.27(n)
88.37(a)
  607269  XM_005620404.1  XP_005620461.1 
zebrafish
(Danio rerio)
Actinopterygii calml4b6
calmodulin-like 4b
28(a)
many ↔ many
25(1389161-1436673) ENSDARG00000059347
fruit fly
(Drosophila melanogaster)
Insecta CG177706
CG50246
--
32(a)
28(a)
1 ↔ many
1 ↔ many
3R(21637633-21638856)
3R(21636818-21637497)


ENSEMBL Gene Tree for CALML6 (if available)
TreeFam Gene Tree for CALML6 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for CALML6 gene
CALML32  CABP52  CABP12  TNNC12  CALM32  CABP42  CABP22  CALM12  
TNNC22  CALML52  CALML42  CALM22  
Selected SIMAP similar genes for CALML6 using alignment to 2 protein entries:     CALL6_HUMAN (see all proteins) (see all similar genes):
CALM1    CALM3    CALML3    TNNC2    CALM2    TNNC1
CETN1    CETN2    CALML4    CALML5    MYL1    MYL9
MYL6    EFCAB2    CETN3    CABP1    CABP2    CABP5

CALML6 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CALML6 (see all 150)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs9415321,2
C,F,A,H--1125716(-) CAGGTC/TGGGCT 1 -- ut31 ese316Minor allele frequency- T:0.03NS NA WA CSA EA 936
rs1902359201,2
--1844347(+) AGAGCA/GGGACT 1 -- us2k10--------
rs1116164741,2
C--1844422(+) CACTCC/TGTCAC 1 -- us2k11Minor allele frequency- T:0.50CSA 2
rs1827593581,2
--1844447(+) AGTGGC/TGCAAT 1 -- us2k10--------
rs1884559281,2
--1844690(+) ACACCC/TGGCCC 1 -- us2k10--------
rs2008739521,2
--1844692(+) CCCGG-/TCCCCC 1 -- us2k10--------
rs288425621,2
C,F--1844693(+) CCCGGT/CCCCCG 1 -- us2k16Minor allele frequency- C:0.46NA CSA WA EA 364
rs1150668531,2
F--1844697(+) GCCCCC/TGGAGT 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1169766351,2
C,F--1844849(+) GGTACG/AGCCAT 1 -- us2k11Minor allele frequency- A:0.02EA 120
rs1440598551,2
--1844880(+) CTGAAC/TGTGGC 1 -- us2k10--------

HapMap Linkage Disequilibrium report for CALML6 (1846266 - 1848735 bp)

Structural Variations
     Database of Genomic Variants (DGV) 7 variations for CALML6:    About this table    
Variant IDTypeSubtypePubMed ID
nsv870914CNV Loss21882294
dgv56n71CNV Loss21882294
nsv834335CNV Loss17160897
nsv871672CNV Loss21882294
dgv55n71CNV Loss21882294
nsv10383CNV Gain18304495
dgv9e1CNV Complex17122850

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610171    OMIM disorders: --

4 diseases for CALML6:    About MalaCards
pertussis    tuberculosis    alzheimer's disease    prostatitis


CALML6 for disorders           About GeneDecksing


Export disorders for CALML6 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CALML6 gene integrated from 10 sources:
(articles sorted by number of sources associating them with CALML6)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Cloning and characterization of human CAGLP gene encoding a novel EF- hand protein. (PubMed id 15621662)1, 2, 9 Chen S....Yu L. (DNA Seq. 2004)
  2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
  3. Proteomic analysis of GTP cyclohydrolase 1 multiprotein complexes in cultured normal adult human astrocytes under both basal and cytokine-activated conditions. (PubMed id 19294699)1 Chiarini A....Dal Pra I. (Proteomics 2009)
  4. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 163688 HGNC: 24193 AceView: CAGLP Ensembl:ENSG00000169885 euGenes: HUgn163688
ECgene: CALML6 Kegg: 163688 H-InvDB: CALML6

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CALML6 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CALML6 gene:
Search GeneIP for patents involving CALML6

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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