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Aliases for CALML6 Gene

Aliases for CALML6 Gene

  • Calmodulin Like 6 2 3 5
  • Calglandulin-Like Protein 3 4
  • CAGLP 3 4
  • Calmodulin-Like Protein 6 3
  • Calmodulin-Like 6 2
  • EF-Hand Protein 3
  • CALGP 4

External Ids for CALML6 Gene

Previous GeneCards Identifiers for CALML6 Gene

  • GC01P001880
  • GC01P001126

Summaries for CALML6 Gene

GeneCards Summary for CALML6 Gene

CALML6 (Calmodulin Like 6) is a Protein Coding gene. Among its related pathways are Vascular smooth muscle contraction and Tuberculosis. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CALM2.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALML6 Gene

Genomics for CALML6 Gene

Regulatory Elements for CALML6 Gene

Enhancers for CALML6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G001906 2.1 FANTOM5 Ensembl ENCODE dbSUPER 17 -5.6 -5565 4.3 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 LOC105378949 ENSG00000240731 CALML6 CCNL2 LOC100288379 TMEM52 NOC2L GABRD CFAP74 LOC105378589
GH01G001888 1.6 Ensembl ENCODE dbSUPER 15.6 -20.7 -20743 9.9 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 LOC105378949 CALML6 NOC2L LOC100288379 CCNL2 ATAD3A PUSL1 TMEM52 PLEKHN1 ENSG00000240731
GH01G001942 1.3 Ensembl ENCODE 16.5 +29.8 29809 2.2 HDGF MLX CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 TMEM52 LOC105378949 CALML6 MORN1 LOC100129534 LINC01786 ENSG00000240731 ENSG00000272455 SLC35E2 MIB2
GH01G001775 1.7 FANTOM5 ENCODE dbSUPER 11.7 -134.2 -134227 8.6 HDGF PKNOX1 FOXA2 ARNT CREB3L1 AGO1 ZFP64 WRNIP1 ARID4B SIN3A NADK ENSG00000240731 CCNL2 LOC100288379 LOC105378949 ENSG00000230092 FAM87B LINC00115 TMEM52 LOC100129381
GH01G001757 1.3 ENCODE dbSUPER 14.7 -154.9 -154865 2.8 HDGF PKNOX1 ATF1 SIN3A ZBTB7B YY1 TCF12 ZNF766 CBX5 ELK1 CALML6 TMEM52 GC01M001756 GC01P001762
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CALML6 on UCSC Golden Path with GeneCards custom track

Genomic Location for CALML6 Gene

Chromosome:
1
Start:
1,913,752 bp from pter
End:
1,917,296 bp from pter
Size:
3,545 bases
Orientation:
Plus strand

Genomic View for CALML6 Gene

Genes around CALML6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALML6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALML6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALML6 Gene

Proteins for CALML6 Gene

  • Protein details for CALML6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TD86-CALL6_HUMAN
    Recommended name:
    Calmodulin-like protein 6
    Protein Accession:
    Q8TD86
    Secondary Accessions:
    • A2A2M3
    • Q6Q2C4

    Protein attributes for CALML6 Gene

    Size:
    181 amino acids
    Molecular mass:
    20690 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CALML6 Gene

Post-translational modifications for CALML6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CALML6 Gene

No data available for DME Specific Peptides for CALML6 Gene

Domains & Families for CALML6 Gene

Gene Families for CALML6 Gene

Protein Domains for CALML6 Gene

Suggested Antigen Peptide Sequences for CALML6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TD86

UniProtKB/Swiss-Prot:

CALL6_HUMAN :
  • Belongs to the calmodulin family. Calglandulin subfamily.
Family:
  • Belongs to the calmodulin family. Calglandulin subfamily.
genes like me logo Genes that share domains with CALML6: view

Function for CALML6 Gene

Gene Ontology (GO) - Molecular Function for CALML6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CALML6: view

Phenotypes for CALML6 Gene

GenomeRNAi human phenotypes for CALML6:
genes like me logo Genes that share phenotypes with CALML6: view

Animal Model Products

CRISPR Products

miRNA for CALML6 Gene

miRTarBase miRNAs that target CALML6

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CALML6 Gene

Localization for CALML6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CALML6 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CALML6 gene
Compartment Confidence
nucleus 4
cytosol 3
extracellular 1

Gene Ontology (GO) - Cellular Components for CALML6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with CALML6: view

Pathways & Interactions for CALML6 Gene

genes like me logo Genes that share pathways with CALML6: view

Gene Ontology (GO) - Biological Process for CALML6 Gene

None

No data available for SIGNOR curated interactions for CALML6 Gene

Drugs & Compounds for CALML6 Gene

No Compound Related Data Available

Transcripts for CALML6 Gene

mRNA/cDNA for CALML6 Gene

(4) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CALML6 Gene

Calmodulin-like 6:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALML6 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1:
SP2: -

Relevant External Links for CALML6 Gene

GeneLoc Exon Structure for
CALML6
ECgene alternative splicing isoforms for
CALML6

Expression for CALML6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CALML6 Gene

mRNA differential expression in normal tissues according to GTEx for CALML6 Gene

This gene is overexpressed in Muscle - Skeletal (x17.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CALML6 Gene



Protein tissue co-expression partners for CALML6 Gene

NURSA nuclear receptor signaling pathways regulating expression of CALML6 Gene:

CALML6

SOURCE GeneReport for Unigene cluster for CALML6 Gene:

Hs.85902

mRNA Expression by UniProt/SwissProt for CALML6 Gene:

Q8TD86-CALL6_HUMAN
Tissue specificity: Expressed in prostate, thymus, heart, skeleton muscle, bone marrow and ovary.

Evidence on tissue expression from TISSUES for CALML6 Gene

  • Muscle(4.4)
genes like me logo Genes that share expression patterns with CALML6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALML6 Gene

Orthologs for CALML6 Gene

This gene was present in the common ancestor of animals.

Orthologs for CALML6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CALML6 34 35
  • 98.34 (n)
dog
(Canis familiaris)
Mammalia CALML6 34 35
  • 85.27 (n)
cow
(Bos Taurus)
Mammalia CALML6 35
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CALML6 35
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii calml4b 35
  • 28 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG17770 35
  • 32 (a)
OneToMany
CG5024 35
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4307 35
  • 44 (a)
OneToOne
Species where no ortholog for CALML6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CALML6 Gene

ENSEMBL:
Gene Tree for CALML6 (if available)
TreeFam:
Gene Tree for CALML6 (if available)

Paralogs for CALML6 Gene

Paralogs for CALML6 Gene

(20) SIMAP similar genes for CALML6 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CALML6: view

Variants for CALML6 Gene

Sequence variations from dbSNP and Humsavar for CALML6 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000816459 -- 1,915,394(+) GGTCC(A/G)GTGAA intron-variant
rs1001102779 -- 1,914,099(+) TTGGG(C/T)TCCAG upstream-variant-2KB, utr-variant-5-prime
rs1001165328 -- 1,917,354(+) GTGGG(C/G)CTGGA downstream-variant-500B
rs1001214542 -- 1,917,613(+) TTATT(C/T)TCTCT downstream-variant-500B, utr-variant-3-prime
rs1001913530 -- 1,913,984(+) TACTG(G/T)GTCTT upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CALML6 Gene

Variant ID Type Subtype PubMed ID
esv2758913 CNV gain+loss 17122850
nsv10383 CNV gain 18304495
nsv482937 CNV loss 15286789
nsv834335 CNV loss 17160897
nsv951400 CNV deletion 24416366

Variation tolerance for CALML6 Gene

Residual Variation Intolerance Score: 78.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.24; 81.12% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CALML6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALML6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALML6 Gene

Disorders for CALML6 Gene

Relevant External Links for CALML6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALML6

No disorders were found for CALML6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALML6 Gene

Publications for CALML6 Gene

  1. Cloning and characterization of human CAGLP gene encoding a novel EF- hand protein. (PMID: 15621662) Chen S. … Yu L. (DNA Seq. 2004) 3 4 22 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  3. Proteomic analysis of GTP cyclohydrolase 1 multiprotein complexes in cultured normal adult human astrocytes under both basal and cytokine-activated conditions. (PMID: 19294699) Chiarini A. … Dal Pra I. (Proteomics 2009) 3 64
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CALML6 Gene

Sources for CALML6 Gene

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