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Aliases for CALML3-AS1 Gene

Subcategory (RNA class) for CALML3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CALML3-AS1 Gene

  • CALML3 Antisense RNA 1 2 3 5

External Ids for CALML3-AS1 Gene

Previous GeneCards Identifiers for CALML3-AS1 Gene

  • GC10M005556

Summaries for CALML3-AS1 Gene

GeneCards Summary for CALML3-AS1 Gene

CALML3-AS1 (CALML3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALML3-AS1 Gene

Genomics for CALML3-AS1 Gene

Regulatory Elements for CALML3-AS1 Gene

Enhancers for CALML3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F005543 0.8 FANTOM5 Ensembl ENCODE 26.6 -23.5 -23484 11.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CBX5 CALML3-AS1 CALML3 NRBF2P5 ENSG00000256462 CALML5 NET1 FBXO18 LOC105376380
GH10F005476 0.8 ENCODE 17.9 +47.4 47413 5.1 HDGF PKNOX1 ARNT CBX5 ELK1 GATA2 CEBPZ SP5 NCOA1 ZHX2 CALML5 CALML3-AS1 CALML3 ENSG00000256462 ASB13 TUBAL3 LOC105376379 NET1
GH10F005486 1 Ensembl ENCODE 17.4 +38.0 37963 4.5 HDGF PKNOX1 MLX ARID4B SIN3A YY1 ZNF548 FOS SP5 NFYC ENSG00000226647 CALML3-AS1 LOC105376384 ENSG00000256462 CALML3 CALML5 TUBAL3 UCN3 LOC105376379 NET1
GH10F005464 0.5 Ensembl ENCODE 16.3 +59.4 59376 5.2 ATF1 PKNOX1 DMAP1 ZNF48 GATA2 CBX5 ZNF263 ZNF592 SMARCA4 HMBOX1 CALML3-AS1 TUBAL3 CALML5 CALML3 ENSG00000256462 LOC105376379 NET1
GH10F005573 1 Ensembl ENCODE 11.9 -49.2 -49241 3.8 ARID4B ZNF48 RAD21 RARA ZEB1 ZNF366 FOS CREM EGR2 ZNF202 NRBF2P5 CALML3-AS1 ENSG00000256462 CALML3 CALML5 ENSG00000226647 LOC105376384 GDI2 ASB13 LOC105376383
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CALML3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CALML3-AS1 Gene

Chromosome:
10
Start:
5,514,244 bp from pter
End:
5,526,246 bp from pter
Size:
12,003 bases
Orientation:
Minus strand

Genomic View for CALML3-AS1 Gene

Genes around CALML3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALML3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALML3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALML3-AS1 Gene

Proteins for CALML3-AS1 Gene

Post-translational modifications for CALML3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALML3-AS1 Gene

Domains & Families for CALML3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CALML3-AS1 Gene

Function for CALML3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALML3-AS1 Gene

Localization for CALML3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CALML3-AS1 Gene

Pathways & Interactions for CALML3-AS1 Gene

SuperPathways for CALML3-AS1 Gene

No Data Available

Interacting Proteins for CALML3-AS1 Gene

Gene Ontology (GO) - Biological Process for CALML3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CALML3-AS1 Gene

Transcripts for CALML3-AS1 Gene

mRNA/cDNA for CALML3-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CALML3-AS1 Gene

No ASD Table

Relevant External Links for CALML3-AS1 Gene

GeneLoc Exon Structure for
CALML3-AS1
ECgene alternative splicing isoforms for
CALML3-AS1

Expression for CALML3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CALML3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CALML3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x16.8), Skin - Not Sun Exposed (Suprapubic) (x7.6), Vagina (x7.4), Skin - Sun Exposed (Lower leg) (x7.4), and Cervix - Ectocervix (x4.1).

Protein differential expression in normal tissues from HIPED for CALML3-AS1 Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for CALML3-AS1 Gene



Protein tissue co-expression partners for CALML3-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for CALML3-AS1 Gene:

Hs.678826
genes like me logo Genes that share expression patterns with CALML3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CALML3-AS1 Gene

Orthologs for CALML3-AS1 Gene

Evolution for CALML3-AS1 Gene

ENSEMBL:
Gene Tree for CALML3-AS1 (if available)
TreeFam:
Gene Tree for CALML3-AS1 (if available)

No data available for Orthologs for CALML3-AS1 Gene

Paralogs for CALML3-AS1 Gene

No data available for Paralogs for CALML3-AS1 Gene

Variants for CALML3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CALML3-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10623895 -- 5,518,147(+) CCATA(-/A/AA)AAAAA intron-variant
rs10904521 -- 5,517,812(+) TATGT(A/G)TTGAA intron-variant
rs10904522 -- 5,518,881(+) CCCAA(A/G)ACCCT intron-variant
rs111234298 -- 5,519,157(+) TACAT(C/T)TTTAA intron-variant
rs111588338 -- 5,526,619(+) TTGGG(C/T)ACACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CALML3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv664n100 CNV gain 25217958
esv1329930 CNV insertion 17803354
esv2759729 CNV gain 17122850
nsv1051283 CNV gain 25217958
nsv523491 CNV gain 19592680
nsv549886 CNV loss 21841781
nsv831774 CNV gain 17160897

Relevant External Links for CALML3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALML3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CALML3-AS1 Gene

Disorders for CALML3-AS1 Gene

Relevant External Links for CALML3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALML3-AS1

No disorders were found for CALML3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALML3-AS1 Gene

Publications for CALML3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for CALML3-AS1 Gene

Sources for CALML3-AS1 Gene

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