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Aliases for CALML3-AS1 Gene

Subcategory (RNA class) for CALML3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for CALML3-AS1 Gene

  • CALML3 Antisense RNA 1 2 3

External Ids for CALML3-AS1 Gene

ORGUL Members for CALML3-AS1 Gene

Summaries for CALML3-AS1 Gene

GeneCards Summary for CALML3-AS1 Gene

CALML3-AS1 (CALML3 Antisense RNA 1) is an RNA Gene, and belongs to the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALML3-AS1 Gene

Genomics for CALML3-AS1 Gene

Genomic Location for CALML3-AS1 Gene

Start:
5,514,244 bp from pter
End:
5,526,246 bp from pter
Size:
12,003 bases
Orientation:
Minus strand

Genomic View for CALML3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CALML3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALML3-AS1 Gene

No data available for Regulatory Elements for CALML3-AS1 Gene

Proteins for CALML3-AS1 Gene

Post-translational modifications for CALML3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALML3-AS1 Gene

Domains for CALML3-AS1 Gene

Gene Families for CALML3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CALML3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CALML3-AS1 Gene

Function for CALML3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CALML3-AS1 Gene

Localization for CALML3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CALML3-AS1 Gene

Pathways for CALML3-AS1 Gene

SuperPathways for CALML3-AS1 Gene

No Data Available

Interacting Proteins for CALML3-AS1 Gene

Gene Ontology (GO) - Biological Process for CALML3-AS1 Gene

None

No data available for Pathways by source for CALML3-AS1 Gene

Transcripts for CALML3-AS1 Gene

mRNA/cDNA for CALML3-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CALML3-AS1 Gene

No ASD Table

Relevant External Links for CALML3-AS1 Gene

GeneLoc Exon Structure for
CALML3-AS1
ECgene alternative splicing isoforms for
CALML3-AS1

Expression for CALML3-AS1 Gene

mRNA expression in normal human tissues for CALML3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CALML3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (16.8), Skin - Not Sun Exposed (Suprapubic) (7.6), Vagina (7.4), Skin - Sun Exposed (Lower leg) (7.4), and Cervix - Ectocervix (4.1).

Integrated Proteomics: protein expression from for CALML3-AS1 Gene

SOURCE GeneReport for Unigene cluster for CALML3-AS1 Gene Hs.678826

genes like me logo Genes that share expressions with CALML3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CALML3-AS1 Gene

Orthologs for CALML3-AS1 Gene

Evolution for CALML3-AS1 Gene

ENSEMBL:
Gene Tree for CALML3-AS1 (if available)
TreeFam:
Gene Tree for CALML3-AS1 (if available)

No data available for Orthologs for CALML3-AS1 Gene

Paralogs for CALML3-AS1 Gene

No data available for Paralogs for CALML3-AS1 Gene

Variants for CALML3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CALML3-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs4072067 -- 5,516,386(+) TTGAC(A/G)GGGAA nc-transcript-variant
rs4403702 -- 5,520,639(-) cgagg(C/T)gggcg intron-variant
rs4881469 -- 5,520,311(+) TTAAC(A/T)TTTAT intron-variant
rs4881471 -- 5,520,743(+) atcct(C/T)tcact intron-variant
rs5782832 -- 5,516,182(+) ACAGG(-/C)CACCT nc-transcript-variant

Relevant External Links for CALML3-AS1 Gene

HapMap Linkage Disequilibrium report
CALML3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CALML3-AS1 Gene

Disorders for CALML3-AS1 Gene

No disorders were found for CALML3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CALML3-AS1 Gene

Publications for CALML3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CALML3-AS1 Gene

Sources for CALML3-AS1 Gene

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