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Aliases for CALM2P1 Gene

Aliases for CALM2P1 Gene

  • Calmodulin 2 Pseudogene 1 2 3 5

External Ids for CALM2P1 Gene

Previous GeneCards Identifiers for CALM2P1 Gene

  • GC17U990010
  • GC17P065751
  • GC17P068232

Summaries for CALM2P1 Gene

GeneCards Summary for CALM2P1 Gene

CALM2P1 (Calmodulin 2 Pseudogene 1) is a Pseudogene. Diseases associated with CALM2P1 include Prostate Cancer Susceptibility.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALM2P1 Gene

Genomics for CALM2P1 Gene

Regulatory Elements for CALM2P1 Gene

Enhancers for CALM2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G070205 1.2 Ensembl ENCODE 0.3 -35.7 -35722 1.1 HDGF MLX ARID4B SIN3A ZNF48 ZNF2 ELK1 ZNF143 ZHX2 KAT8 GC17M070172 CALM2P1
GH17G070239 0.5 ENCODE 0.7 -1.5 -1513 0.2 JUND MLLT1 TRIM28 CALM2P1 GC17M070172
GH17G070184 0.9 ENCODE dbSUPER 0.2 -56.3 -56253 0.2 MTA2 BHLHE40 RAD21 JUND GATA2 TARDBP EED NBN RELB FOS GC17M070172 CALM2P1
GH17G070174 0.9 dbSUPER 0.2 -64.4 -64391 4.1 ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 KCNJ2-AS1 GC17M070172 CALM2P1
GH17G070196 0.5 ENCODE dbSUPER 0.3 -44.4 -44433 0.2 GC17M070172 CALM2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CALM2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CALM2P1 Gene

Chromosome:
17
Start:
70,241,247 bp from pter
End:
70,242,378 bp from pter
Size:
1,132 bases
Orientation:
Plus strand

Genomic View for CALM2P1 Gene

Genes around CALM2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALM2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALM2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALM2P1 Gene

Proteins for CALM2P1 Gene

Post-translational modifications for CALM2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALM2P1 Gene

Domains & Families for CALM2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CALM2P1 Gene

Function for CALM2P1 Gene

Molecular function for CALM2P1 Gene

GENATLAS Biochemistry:
calmodulin 2,pseudogene 1

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALM2P1 Gene

Localization for CALM2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CALM2P1 Gene

Pathways & Interactions for CALM2P1 Gene

SuperPathways for CALM2P1 Gene

No Data Available

Interacting Proteins for CALM2P1 Gene

Gene Ontology (GO) - Biological Process for CALM2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CALM2P1 Gene

Drugs & Compounds for CALM2P1 Gene

No Compound Related Data Available

Transcripts for CALM2P1 Gene

mRNA/cDNA for CALM2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CALM2P1 Gene

No ASD Table

Relevant External Links for CALM2P1 Gene

GeneLoc Exon Structure for
CALM2P1
ECgene alternative splicing isoforms for
CALM2P1

Expression for CALM2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CALM2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CALM2P1 Gene:

CALM2P1
genes like me logo Genes that share expression patterns with CALM2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALM2P1 Gene

Orthologs for CALM2P1 Gene

Evolution for CALM2P1 Gene

ENSEMBL:
Gene Tree for CALM2P1 (if available)
TreeFam:
Gene Tree for CALM2P1 (if available)

No data available for Orthologs for CALM2P1 Gene

Paralogs for CALM2P1 Gene

No data available for Paralogs for CALM2P1 Gene

Variants for CALM2P1 Gene

Relevant External Links for CALM2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALM2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CALM2P1 Gene

Disorders for CALM2P1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CALM2P1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer susceptibility
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CALM2P1

Genetic Association Database (GAD)
CALM2P1
genes like me logo Genes that share disorders with CALM2P1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CALM2P1 Gene

Publications for CALM2P1 Gene

  1. A calmodulin pseudogene on human chromosome 17. (PMID: 2717417) Sen Gupta B. … Friedberg F. (Nucleic Acids Res. 1989) 2 3 64
  2. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe D.W. … Martin R.M. (Cancer Epidemiol. Biomarkers Prev. 2014) 3 64
  3. A common variant near the KCNJ2 gene is associated with T-peak to T-end interval. (PMID: 22342860) Marjamaa A. … Salomaa V. (Heart Rhythm 2012) 46 64
  4. A genome-wide association study identifies novel susceptibility genetic variation for thyrotoxic hypokalemic periodic paralysis. (PMID: 22399142) Jongjaroenprasert W. … Nakamura Y. (J. Hum. Genet. 2012) 46 64
  5. GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease. (PMID: 21658281) Aouizerat B.E. … Tseng Z.H. (BMC Cardiovasc Disord 2011) 46 64

Products for CALM2P1 Gene

Sources for CALM2P1 Gene

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