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Aliases & Descriptions for CALM1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CALM 3 | | CALML2 2, 3 | | CAM 3 | | CAM1 3 | | CAM2 3 | | CAM3 3 | | CAMB 3 | | CAMC 3 | | CAMI 1, 2 | | CAMIII 3 | | CaM 3 | | DD132 1, 2 | | PHKD 1, 2, 5 |
| | | Descriptions |
|---|
| calmodulin 1 2 | | calmodulin 1 (phosphorylase kinase, delta) 2 | | phosphorylase kinase, delta subunit 2 |
|
| | Search outside databases for aliases for CALM1 genePrevious GC identifers: GC14P088369 GC14P084679 GC14P088853 |
Summaries for CALM1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CALM1: Calmodulin is the archetype of the family of calcium-modulated proteins of which nearly 20 members have been found. They are identified by their occurrence in the cytosol or on membranes facing the cytosol and by a high affinity for calcium. Calmodulin contains 149 amino acids and has 4 calcium-binding domains. Its functions include roles in growth and the cell cycle as well as in signal transduction and the synthesis and release of neurotransmitters.[supplied by OMIM] UniProtKB/Swiss-Prot: CALM_HUMAN, P62158Function: Calmodulin mediates the control of a large number of enzymes and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CEP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesisGene Wiki entry for CALM1 (Calmodulin_1) |
Genomic Location for CALM1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CALM1 gene 
Entrez Gene cytogenetic band: 14q24-q31 Ensembl cytogenetic band: 14q32.11 HGNC cytogenetic band: 14q24-q31CALM1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14P089933:
(about GC identifiers)
Start:
|
89,933,126 bp from pter |
End:
|
89,944,363 bp from pter |
Size:
|
11,238 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000014.7 NT_026437.11
| Proteins for CALM1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CALM_HUMAN, P62158 (See
protein sequence)Recommended Name: Calmodulin Size: 149 amino acids; 16838 Da
Subunit: Interacts with MYO1C (By similarity). Interacts with CEP97, CEP110, TTN/titin and SRY
Subcellular location: Spindle. Note=Distributed throughout the cell during interphase, but during mitosis becomes dramatically localized to the spindle poles and the spindle microtubules
Miscellaneous: This protein has four functional calcium-binding sites
Sequence caution: Sequence=CAA36839.1; Type=Erroneous gene model prediction;
PDB structures from and Proteopedia :1AJI (3D)
 1CDL (3D)
 1CLL (3D)
 1CTR (3D)
 1IWQ (3D)
 1J7O (3D)
 1J7P (3D)
 1K90 (3D)
 1K93 (3D)
 1L7Z (3D)
 1LVC (3D)
 1NKF (3D)
 1PK0 (3D)
 1S26 (3D)
 1SK6 (3D)
 1SW8 (3D)
 1WRZ (3D)
 1XFU (3D)
 1XFV (3D)
 1XFW (3D)
 1XFX (3D)
 1XFY (3D)
 1XFZ (3D)
 1Y6W (3D)
 1YR5 (3D)
 1YRT (3D)
 1YRU (3D)
 1ZOT (3D)
 1ZUZ (3D)
 2BE6 (3D)
 2F3Y (3D)
 2F3Z (3D)
 2HF5 (3D)
 2I08 (3D)
 2JZI (3D)
 2K0E (3D)
 2K0F (3D)
 2K0J (3D)
 2K61 (3D)
 2R28 (3D)
 2V01 (3D)
 2V02 (3D)
 2VAY (3D)
 2WEL (3D)
 3BYA (3D)
 3DVE (3D)
 3DVJ (3D)
 3DVK (3D)
 3DVM (3D)
 3G43 (3D)
 
Secondary accessions: P02593 P70667 P99014 Q13942 Q53S29 Q61379 Q61380 Q96HK3Post-translational modifications:
Ubiquitination results in a strongly decreased activity (By similarity)1
Phosphorylation results in a decreased activity (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_008819.1
ENSEMBL proteins: ENSP00000349467
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CALM1 
Antibodies for CALM1: Assays for CALM1: | Protein
Domains/ Families for CALM1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P62158
ProtoNet protein and cluster: P62158 UniProtKB/Swiss-Prot: CALM_HUMAN, P62158Similarity: Belongs to the calmodulin familySimilarity: Contains 4 EF-hand domains | Gene Function for CALM1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006888
Applied Biosystems Silencer® siRNAs for CALM1
Sigma-Aldrich siRNA for CALM1  Sigma-Aldrich shRNA Panels and shRNA for CALM1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006888                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006888                                  untagged cDNA clone in CMV expression vector: NM_006888 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006888
UniProtKB/Swiss-Prot: CALM_HUMAN, P62158Function: Calmodulin mediates the control of a large number of enzymes and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CEP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesisGenatlas biochemistry entry for CALM1:calmodulin 1,calcium modulated protein | Pathways & Interactions for CALM1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/23 Sigma-Aldrich "Your Favorite Gene" Pathways for CALM1 (Your Favorite Gene powered by Ingenuity) (see all 23
) 
Gene Network CentralTM Interacting Genes and Proteins Network for CALM1 
5/118 Interacting proteins for CALM1 (P621581, 2 ENSP000003494673) via UniProtKB, MINT, and/or STRING (see all 118
)About this table
|
Drugs & Compounds for CALM1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CALM1
|
Transcripts for CALM1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006888
Sigma-Aldrich siRNA for CALM1  Sigma-Aldrich shRNA Panels and shRNA for CALM1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006888 REFSEQ mRNAs for CALM1 gene: NM_006888.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006888               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006888                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006888                                  untagged cDNA clone in CMV expression vector: NM_006888  Additional cDNA sequence: AK289937.1 AY189287.1 BC000454.2 BC007965.2 BC008597.1 BC011834.2 BC042831.1 BT006818.1 BX537677.1 BX648223.1 CR590380.1 CR591035.1 CR592381.1 CR595745.1 CR604747.1 CR618763.1 CR619428.1 CR626701.1 L37715.1 M27319.1 U16850.1 24/39 DOTS entries (see all 39
): DT.95203091 DT.100888491 DT.92463189 DT.91929905 DT.100888511 DT.120780285 DT.95111250 DT.120780225 DT.120780237 DT.100034559 DT.95203069 DT.120780231 DT.120780232 DT.95203107 DT.100888490 DT.95203053 DT.100888476 DT.100888499 DT.120780329 DT.95203059 DT.120780148 DT.120780241 DT.120780333 DT.92463188 24/1535 AceView cDNA sequences (see all 1535
):BE552127 CB163664 AA236541 H77337 BQ648519 N42353 BQ644110 AI744389 F08797 AA778347 H60495 AI498635 N66809 BP374712 BI438647 BM314573 AW510546 AA460374 BU734925 AA911773 T32219 AW051407 BM838032 CN480740
highest scoring ESTs for CALM1:AA070961 AA070962 AA082837 AA085590 AA093133 AA205309 AA216057 AA236541 AA236725 AA278819 Unigene Cluster for CALM1: Calmodulin 1 (phosphorylase kinase, delta) Hs.282410 [show with all ESTs]Unigene Representative Sequence: NM_006888
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CALM1 (see all 6
)
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | ^ | 8a | · | 8b | |
| SP1: | |   | - |   | - |   | |   | - |   | |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP5: | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CALM1
1 Ensembl transcript including schematic representation: ENST00000356978
|
Expression for CALM1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CALM1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CALM1
1 / 2 / 3 17 probe-sets matching CALM1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.282410
Expression variation in blood from EXPOLDB for CALM1 |
Orthologs for CALM1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CALM1 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for CALM1
ENSEMBL Gene Tree for CALM1 | Paralogs for CALM1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CALM1 gene
- CALM21 2 CALM31 2
|
SNPs/Variants for CALM1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CALM1 (up to first 250kb)
|
Disorders & Mutations for CALM1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 114180
1 PharmGKB disease relationship for CALM1 geneAbout this table
Human Gene Mutation Database: CALM1 Genetic Association Database: CALM1 Human Genome Epidemiology Navigator: CALM1 (9 documents)
|
Medical News for CALM1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CALM1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/205 PubMed articles for CALM1 gene (see all 205
):- Isolation and nucleotide sequence of a cDNA encoding human calmodulin. (PubMed id 6385987)2, 3, 4 Wawrzynczak E.J. and Perham R.N. (1984)
- The CALM1 core promoter polymorphism is not associated with hip osteoarthritis in a United Kingdom Caucasian population. (PubMed id 16359877)3, 6 Loughlin J....Chapman K. (2006)
- A functional single nucleotide polymorphism in the core promoter region of CALM1 is associated with hip osteoarthritis in Japanese. (PubMed id 15746150)3, 6 Mototani H....Ikegawa S. (2005)
- Insights into voltage-gated calcium channel regulation from the structure of the CaV1.2 IQ domain-Ca2+/calmodulin complex. (PubMed id 16299511)3, 4 Van Petegem F.... Minor D.L. Jr. (2005)
- Defective calmodulin-mediated nuclear transport of the sex- determining region of the Y chromosome (SRY) in XY sex reversal. (PubMed id 15746192)3, 4 Sim H.... Harley V.R. (2005)
- Characterization of the human CALM2 calmodulin gene and comparison of the transcriptional activity of CALM1, CALM2 and CALM3. (PubMed id 9681195)3, 4 Toutenhoofd S.L.... Strehler E.E. (1998)
- Structure of the human CALM1 calmodulin gene and identification of two CALM1-related pseudogenes CALM1P1 and CALM1P2. (PubMed id 7925473)3, 4 Rhyner J.A.... Strehler E.E. (1994)
- Structural organization of the human CaMIII calmodulin gene. (PubMed id 2223880)3, 4 Koller M.... Strehler E.E. (1990)
- Gene variants associated with ischemic stroke: the cardiovascular health study. (PubMed id 19023099)3 Luke M.M....Psaty B.M. (2009)
- Association of the CALM1 core promoter polymorphism with knee osteoarthritis in patients of Greek origin. (PubMed id 18452398)3 Poulou M....Tzetis M. (2008)
|
Search for CALM1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CALM1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CALM1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CALM1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CALM1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CALM1:

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Incremental update: 13 Oct 2009
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