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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CALM1 Gene

protein-coding GIFtS: 69
GCID: GC14P090863

calmodulin 1 (phosphorylase kinase, delta)

(Previous symbol: CALML2)

Explore 28 diseases affiliated with
CALM1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Calmodulin 1 (Phosphorylase Kinase, Delta)¹ ²		CALM³
CALML2¹ ² ³		CAM³
PHKD¹ ² ⁵		CAM1³
CAMI¹ ²		CAM2³
DD132¹ ²		CAM3³
CPVT4²		CAMB³
CaM³		CAMC³
Calmodulin¹		CAMIII³
Phosphorylase Kinase, Delta Subunit²		CaM³
Prepro-Calmodulin 1²

External Ids:	HGNC: 1442¹	Entrez Gene: 801²	Ensembl: ENSG00000198668⁷	OMIM: 114180⁵	UniProtKB: P62158³

Export aliases for CALM1 gene to outside databases

Previous GC identifers: GC14P088369 GC14P084679 GC14P088853 GC14P089933 GC14P071038

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CALM1:

This gene encodes a member of the EF-hand calcium-binding protein family. It is one of three genes which encode an

identical calcium binding protein which is one of the four subunits of phosphorylase kinase. Two pseudogenes have been

identified on chromosome 7 and X. Multiple transcript variants encoding different isoforms have been found for this

gene.(provided by RefSeq, Oct 2009)

UniProtKB/Swiss-Prot: CALM_HUMAN, P62158

Function: Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+).

Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Together with CEP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression

through cytokinesis

Gene Wiki entry for CALM1 (Calmodulin 1)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000014.8 NC_018925.1 NT_026437.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CALM1 gene promoter:
STAT5B Pax-5 MyoD C/EBPalpha CHOP-10 Nkx6-1 E2F-1 E2F FOXO1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CALM1 promoter sequence

Search SABiosciences Chromatin IP Primers for CALM1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CALM1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.11 Ensembl cytogenetic band: 14q32.11 HGNC cytogenetic band: 14q32.11

CALM1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CALM1 gene location

GeneLoc information about chromosome 14 GeneLoc Exon Structure

GeneLoc location for GC14P090863: view genomic region (about GC identifiers)

Start:	90,862,846 bp from pter	End:	90,874,619 bp from pter
Size:	11,774 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CALM_HUMAN, P62158 (See protein sequence)

Recommended Name: Calmodulin

Size: 149 amino acids; 16838 Da

Subunit: Interacts with MYO1C and RRAD. Interacts with MYO10 (By similarity). Interacts with CEP97, CEP110, TTN/titin

and SRY. Interacts with USP6; the interaction is calcium dependent. Interacts with CDK5RAP2. Interacts with SCN5A.

Interacts with RYR1 and RYR2. Interacts with FCHO1

Subcellular location: Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, spindle pole. Note=Distributed

throughout the cell during interphase, but during mitosis becomes dramatically localized to the spindle poles and the

spindle microtubules

Miscellaneous: This protein has four functional calcium-binding sites

Sequence caution: Sequence=CAA36839.1; Type=Erroneous gene model prediction;

6/76 PDB 3D structures from and Proteopedia for CALM1 (see all 76):

1AJI (3D)

1CDL (3D)

1CLL (3D)

1CTR (3D)

1IWQ (3D)

1J7O (3D)

Secondary accessions: P02593 P70667 P99014 Q13942 Q53S29 Q61379 Q61380 Q96HK3

Explore the universe of human proteins at neXtProt for CALM1: NX_P62158

Post-translational modifications:

Ubiquitination results in a strongly decreased activity (By similarity)¹

Phosphorylation results in a decreased activity (By similarity)¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P62158

CALM1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_008819.1

ENSEMBL proteins:

ENSP00000451062 ENSP00000349467 ENSP00000403491 ENSP00000451646 ENSP00000450829

ENSP00000442853 ENSP00000450425

Reactome Protein details: P62158
Human Recombinant Protein Products:

	EMD Millipore Purified and/or Recombinant CALM1 Protein
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene Protein Over-expression Lysate: CALM1 OriGene Custom Protein Services for CALM1
	GenScript Custom Purified and Recombinant Proteins Services for CALM1
	Novus Biologicals CALM1 Proteins Novus Biologicals CALM1 Lysate
	Browse Sino Biological Recombinant Proteins
	ProSpec Recombinant Protein for CALM1
	Uscn Proteins for CALM1

Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000922	spindle pole	--	--
GO:0005576	extracellular region	--	--
GO:0005654	nucleoplasm	--	--
GO:0005737	cytoplasm	--	--
GO:0005813	centrosome	--	--

CALM1 for ontologies About GeneDecksing

CALM1 Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of CALM1
	Browse R&D Systems for Antibodies
	Cell Signaling Technology (CST) Antibodies for CALM1 (calmodulin)
	Browse OriGene Antibodies OriGene Custom Antibody Services for CALM1
	GenScript Custom Superior Antibodies Services for CALM1
	Novus Biologicals CALM1 Antibodies
	Abcam antibodies for CALM1
	Uscn Antibodies for CALM1
	ThermoFisher Antibody for CALM1

Assay Products for CALM1:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	Browse R&D Systems for biochemical assays
	GenScript Custom Assay Services for CALM1
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for CALM1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

CALM1 for domains About GeneDecksing

4 InterPro domains/families:

IPR001125 Recoverin

IPR011992 EF-hand-like_dom

IPR002048 EF_hand_Ca-bd

IPR018247 EF_Hand_1_Ca_BS

Graphical View of Domain Structure for InterPro Entry P62158

ProtoNet protein and cluster: P62158

UniProtKB/Swiss-Prot: CALM_HUMAN, P62158

Similarity: Belongs to the calmodulin family

Similarity: Contains 4 EF-hand domains

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: CALM_HUMAN, P62158

Function: Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+).

Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Together with CEP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression

through cytokinesis

Genatlas biochemistry entry for CALM1:

calmodulin 1,calcium modulated protein

miRNA Products:		OriGene 3'-UTR Clone (see all 2): CALM1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CALM1
		8/126 QIAGEN miScript miRNA Assays for microRNAs that regulate CALM1 (see all 126):
		hsa-miR-579 hsa-miR-193a-3p hsa-miR-3194-5p hsa-miR-15a hsa-miR-3138 hsa-miR-890 hsa-miR-298 hsa-miR-3613-3p

		Browse SwitchGear 3'UTR luciferase reporter plasmids

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CALM1 (see all 7) OriGene shRNA RFP: CALM1 OriGene siRNA: CALM1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CALM1

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for CALM1

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CALM1 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CALM1 (see all 2) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CALM1 (NM_006888)
		Browse Sino Biological Human cDNA Clones
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CALM1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CALM1

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for CALM1
		Search LifeMap BioReagents cell lines for CALM1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CALM1

Gene Ontology (GO): 5/10 molecular function terms (GO ID links to tree view) (see all 10): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005509	calcium ion binding	--	--
GO:0005515	protein binding	--	--
GO:0016301	kinase activity	--	--
GO:0019904	protein domain specific binding	--	--
GO:0031432	titin binding	--	--

CALM1 for ontologies About GeneDecksing

2 GenomeRNAi human phenotypes for CALM1:

Decreased G3BP1 protein expres

Synthetic lethal with imatinib

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/112 super-pathways (see all 112) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Signaling by FGFR

8/12 pathways (see all 12)
Signaling by FGFR	1.00	DAP12 signaling	0.83
Downstream signaling of activated FGFR	0.92	Signaling by EGFR in Cancer	0.83
Signaling by FGFR in disease	0.91	DAP12 interactions	0.76
Signaling by ERBB2	0.89	Signaling by PDGF	0.72

DAG and IP3 signaling

DAG and IP3 signaling	1.00	CaM pathway	0.84
PLC-gamma1 signalling	0.94	Calmodulin induced events	0.84
EGFR interacts with phospholipase C-gamma	0.94	Ca-dependent events	0.79
PLCG1 events in ERBB2 signaling	0.91	Phospholipase C-mediated cascade	0.57

Development Angiotensin activation of ERK

Development Angiotensin activation of ERK	1.00	Development ACM2 and ACM4 activation of ERK	0.74
Development_Angiotensin activation of ERK	0.98	Development_G-Proteins mediated regulation MARK-ERK signaling	0.66
Development_ACM2 and ACM4 activation of ERK	0.74	Development G-Proteins mediated regulation MARK-ERK signaling	0.66

Development_Endothelin-1/EDNRA transactivation of EGFR

Development_Endothelin-1/EDNRA transactivation of EGFR	1.00	Development_Endothelin-1/EDNRA signaling	0.41
Development Endothelin-1/EDNRA transactivation of EGFR	1.00	Cytoskeleton remodeling_FAK signaling	0.41
Development Endothelin-1/EDNRA signaling	0.41	Cytoskeleton remodeling FAK signaling	0.41

Translation_Translation regulation by Alpha-1 adrenergic receptors

	Translation_Translation regulation by Alpha-1 adrenergic receptors	1.00			Development_Activation of ERK by Alpha-1 adrenergic receptors	0.64
	Translation Translation regulation by Alpha-1 adrenergic receptors	1.00			Development Activation of ERK by Alpha-1 adrenergic receptors	0.64

Pathway sources
See GeneCards unified pathways
Show all pathways

5/36 EMD Millipore Pathways for CALM1 (see all 36)

	Translation Translation regulation by Alpha-1 adrenergic receptors
	Development Activation of ERK by Alpha-1 adrenergic receptors
	Immune response CD16 signaling in NK cells
	Cytoskeleton remodeling RalB regulation pathway
	Cytoskeleton remodeling FAK signaling

5/41 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CALM1 (see all 41)

	Intracellular Calcium Signaling
	Visual Cycle in Retinal Rods
	PI3K Signaling in B-Lymphocyte
	Dopamine-DARPP32 Feedback onto cAMP Pathway
	Alpha-Adrenergic Signaling

2 Cell Signaling Technology (CST) Pathways for CALM1

	Ca, cAMP and Lipid Signaling
	Neuroscience

5/35 GeneGo (Thomson Reuters) Pathways for CALM1 (see all 35)

	Signal transduction cAMP signaling
	Development Endothelin-1/EDNRA signaling
	Immune response CD28 signaling
	Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling
	Signal transduction Activation of PKC via G-Protein coupled receptor

5/25 BioSystems Pathways for CALM1 (see all 25)

	MicroRNAs in cardiomyocyte hypertrophy
	G13 Signaling Pathway
	Glycogen Metabolism
	Calcium Regulation in the Cardiac Cell
	Myometrial Relaxation and Contraction Pathways

5/66 Reactome Pathways for CALM1 (see all 66)

	Glycogen breakdown (glycogenolysis)
	Inositol phosphate metabolism
	Activation of CaMK IV
	Signaling by PDGF
	Activation of NMDA receptor upon glutamate binding and postsynaptic events

5/17 Kegg Pathways (Kegg details for CALM1) (see all 17):

	Calcium signaling pathway
	Phosphatidylinositol signaling system
	Oocyte meiosis
	Vascular smooth muscle contraction
	Long-term potentiation

CALM1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for CALM1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/606 Interacting proteins for CALM1 (P62158^{1, 2, 3} ENSP00000349467⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 606)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CACNA1C	Q13936¹^,²^,³, ENSP00000266376⁴	EBI-397435,EBI-1038838 MINT-8087834 MINT-8087891 MINT-8087783 MINT-8087930 MINT-8087912 MINT-8087767 MINT-8087800 MINT-8087819 MINT-8087850 MINT-8087867 I2D: score=6 STRING: ENSP00000266376
KCNH1	O95259¹^,²^,³, ENSP00000271751⁴	EBI-397435,EBI-2909270 MINT-7988123 MINT-7988100 I2D: score=3 STRING: ENSP00000271751
RALA	P11233²^,³, ENSP00000005257⁴	MINT-15766 MINT-15764 MINT-15765 I2D: score=4 STRING: ENSP00000005257
MYO10	Q9HD67²^,³, ENSP00000391106⁴	MINT-6595938 MINT-6596013 I2D: score=3 STRING: ENSP00000391106
NFKB2	Q00653²^,³, ENSP00000189444⁴	MINT-48738 MINT-48603 I2D: score=2 STRING: ENSP00000189444

About this table

Gene Ontology (GO): 5/22 biological process terms (GO ID links to tree view) (see all 22): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0002576	platelet degranulation	--	--
GO:0005975	carbohydrate metabolic process	--	--
GO:0005980	glycogen catabolic process	--	--
GO:0006006	glucose metabolic process	--	--
GO:0006936	muscle contraction	--	--

CALM1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CALM1

2 HMDB Compounds for CALM1 About this table

Compound	Synonyms	CAS #	PubMed Ids
Calcium	Ca (see all 2)	7440-70-2	--
Loperamide	Apo-Loperamide (see all 10)	53179-11-6	--

10/24 DrugBank Compounds for CALM1 (see all 24) About this table

Compound	Synonyms	CAS #	Type	Actions	PubMed Ids
Felodipine	Dl-Felodipine (see all 4)	72509-76-3	target	other	2964559 2442519 2833901 4074665 2933041 3178884
Calcium	--	--	target	--	17595168 17537429 17550897 17592724 17612522
Fluphenazine	Fluorfenazine (see all 6)	69-23-8	target	inhibitor	11409178 1515867 12366848 16661928 10516112
Loperamide	--	53179-11-6	target	inhibitor	10991984 2820051 2851449 10949586 2836258
Phenoxybenzamine	Fenossibenzamina [Dcit] (see all 6)	59-96-1	target	inhibitor	9100252 6146911 3994963 3134891 3758070
Pimozide	Pimozida [INN-Spanish] (see all 2)	2062-78-4	target	inhibitor	2386945 6146939 3134891 1965307 2120879
Promethazine	Isopromethazine (see all 12)	60-87-7	target	inhibitor	3022601 3820316 6319437 6433001 6092486
Dibucaine	--	85-79-0	target	inhibitor	6262771 8382768 6140014 7680317
Perphenazine	Chlorperphenazine (see all 8)	58-39-9	target	inhibitor	11409178 2885243 12366848 10516112
3''-(Beta-Chloroethyl)-2'',4''-Dioxo-3, 5''-Spiro-Oxazolidino-4-Deacetoxy-Vinblastine	--	--	target	--	17139284 17016423 10592235

Search CenterWatch for drugs/clinical trials and news about CALM1 / CALM

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CALM1 gene (2 alternative transcripts):

NM_006888.4 NM_001166106.1

Unigene Cluster for CALM1:

Calmodulin 1 (phosphorylase kinase, delta)

Hs.282410 [show with all ESTs]

Unigene Representative Sequence: NM_006888

15 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000557020 ENST00000356978(uc001xyl.2 uc010atq.2 uc001xym.2)

ENST00000447653 ENST00000555132 ENST00000557123 ENST00000556757 ENST00000553995

ENST00000553630 ENST00000553542 ENST00000553964 ENST00000544280 ENST00000555267

ENST00000553422 ENST00000554296 ENST00000556721

miRNA Products:		OriGene 3'-UTR Clone (see all 2): CALM1 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CALM1
		8/126 QIAGEN miScript miRNA Assays for microRNAs that regulate CALM1 (see all 126):
		hsa-miR-579 hsa-miR-193a-3p hsa-miR-3194-5p hsa-miR-15a hsa-miR-3138 hsa-miR-890 hsa-miR-298 hsa-miR-3613-3p

		Browse SwitchGear 3'UTR luciferase reporter plasmids

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CALM1 (see all 7) OriGene shRNA RFP: CALM1 OriGene siRNA: CALM1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CALM1

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CALM1 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CALM1 (see all 2) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CALM1 (NM_006888)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CALM1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CALM1

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CALM1 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat CALM1
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CALM1
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CALM1

Additional cDNA sequence:

AK289937.1 AY189287.1 BC000454.2 BC007965.2 BC008597.1 BC011834.2 BC042831.1 BT006818.1

BX537677.1 BX648223.1 L37715.1 M27319.1 U16850.1

24/47 DOTS entries (see all 47):

DT.95203091 DT.100888491 DT.92463189 DT.91929905 DT.100888511 DT.95111250 DT.120780285 DT.100034559

DT.120780231 DT.120780225 DT.120780237 DT.95203069 DT.120780232 DT.95203107 DT.100888490 DT.95203053

DT.100888476 DT.100888499 DT.95203059 DT.120780329 DT.92463188 DT.120780148 DT.120780241 DT.120780333

24/1535 AceView cDNA sequences (see all 1535):

T33759 BQ084184 T33903 AI744389 AI655696 AA039463 BM787158 BI772654

BQ631228 BM972954 CR590380 AV728020 F30848 AI928955 CB155557 BE552127

CB136746 BM754503 AA441974 BU149273 U16850 BE671352 AW051407 BI030238

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CALM1 (see all 6) About this scheme

ExUns:	1	^	2a	·	2b	^	3	^	4a	·	4b	·	4c	^	5	^	6a	·	6b	·	6c	^	7a	·	7b	^	8a	·	8b
SP1:			-		-				-				-				-				-
SP2:													-				-				-
SP3:													-				-
SP4:																					-
SP5:			-

ECgene alternative splicing isoforms for CALM1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CALM1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ACAAACTTAG

About this image

CALM1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Testis

Seminiferous Tubules

Sertoli cells

Testis

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

PureStem™ mesenchymal progenitor SM30 (Embryonic Progenitor Cell)

Adipose, Bone, Cartilage

See CALM1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CALM1

SOURCE GeneReport for Unigene cluster: Hs.282410

SABiosciences Expression via Pathway-Focused PCR Arrays including CALM1:

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for CALM1 gene from 8/32 species (see all 32) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	CALM1¹	calmodulin 1 (phosphorylase kinase, delta)	91.28(n) 99.33(a)		396523 NM_001110364.1 NP_001103834.1
lizard (Anolis carolinensis)	Reptilia	-- -- (see all 4)	--	99(a) 67(a) (see all 4)	possible ortholog possible ortholog (see all 4)	GL343568.1(347088-358586) GL343728.1(65478-65930)
African clawed frog (Xenopus laevis)	Amphibia	BJ030532.1²	--	87.36(n)		BJ030532.1
zebrafish (Danio rerio)	Actinopterygii	BC053150.1²	--	82.59(n)		BC053150.1
fruit fly (Drosophila melanogaster)	Insecta	Cam^{1 , 3}	calcium ion sensing calcium ion binding³ Calmodulin¹	97(a) (best of 5)³ 77.63(n)¹ 97.99(a)¹		36329¹ NM_078986.2¹ NP_523710.1¹
worm (Caenorhabditis elegans)	Secernentea	cmd-1^{1 , 3}	calmodulin³ Protein CMD-1¹	97(a) (best of 7)³ 76.96(n)¹ 97.99(a)¹		V(1156006-1157085)³ 178614¹ NM_070985.4¹ NP_503386.1¹
thale cress (Arabidopsis thaliana)	eudicotyledons	CAM4¹	calmodulin 4	73.83(n) 89.26(a)		842959 NM_105312.3 NP_176814.1
rice (Oryza sativa)	Liliopsida	Os05g0491100¹	hypothetical protein	73.83(n) 90.6(a)		4339172 NM_001062442.1 NP_001055907.1

ENSEMBL Gene Tree for CALM1 (if available)
TreeFam Gene Tree for CALM1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for CALM1 gene

CALM2¹ ² CALM3¹ ² CALML3² CABP5² CABP1² TNNC1² CABP4² CABP2²

TNNC2² CALML6² CALML5² CALML4² CABP7² CALN1²

18/50 SIMAP similar genes for CALM1 using alignment to 6 protein entries: CALM_HUMAN (see all proteins) (see all similar genes):

CALM2 CALM3 CALML3 CALML5 CETN1 TNNC2

CETN2 TNNC1 CABP1 CABP5 MYL12B MYL9

CALN1 CALML6 CABP2 MRLC3 MYL6 MYL1

CALM1 for paralogs About GeneDecksing

3 Pseudogenes.org Pseudogenes for CALM1
PGOHUM00000260211 PGOHUM00000260323 PGOHUM00000260974

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 14 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs3759709^1,2	C,	--	71036182(-)	`tcggaC/Ggttgc`	1	--	us2k¹		0	--	--	--	--
rs74895665^1,2		--	71036618(+)	`GTGAAA/GTGAAT`	1	--	us2k¹		0	--	--	--	--
rs111534238^1,2		--	71036657(+)	`CAGCAT/ACCCCT`	1	--	us2k¹		1		CSA	2
rs113656223^1,2		--	71036715(+)	`TTCTGC/TGGCAT`	1	--	us2k¹		1		CSA	2
rs4620900^1,2	C,H	--	71037564(+)	`ATTTAG/ACAACT`	1	--	us2k¹		3		NS NA	184
rs7148581^1,2	C,F,	--	71038029(+)	`GCGTAG/TGGCCG`	1	--	us2k¹		2		WA NA	238
rs12886083^1,2	C,F	--	71038369(+)	`CCTCGC/TTCCCT`	1	--	ut5¹		2		NA	4
rs55995751^1,2		--	71039183(+)	`CGCACC/TCTGCG`	1	--	int¹		0	--	--	--	--
rs7155325^1,2	C,	--	71039373(+)	`CGGCGA/GCGCCG`	1	--	int¹		0	--	--	--	--
rs7155363^1,2	C,	--	71039519(+)	`GCCTTC/TCCCCC`	1	--	int¹ trp³		0	--	--	--	--

HapMap Linkage Disequilibrium report for CALM1 (90862846 - 90874619 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CALM1: --
Human Gene Mutation Database (HGMD): CALM1

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CALM1 for disorders           About GeneDecksing

OMIM gene information: 114180    OMIM disorders: --

20/28 diseases for CALM1 (see all 28):    About MalaCards

xy sex reversal sex reversal multiple epiphyseal dysplasia epiphyseal dysplasia

toxic encephalopathy anorexia nervosa pseudoachondroplasia myeloproliferative disorder

cystic fibrosis scoliosis tetanus brain disease

cholera fibrosis pertussis osteoarthritis

cholangiocarcinoma prostate cancer prostatitis schizophrenia

8 diseases from the University of Copenhagen DISEASES database for CALM1:

Vascular disease Cancer Cholera Pertussis

Toxic encephalopathy Otomycosis Pseudoachondroplasia Malignant hyperthermia

Genetic Association Database (GAD): CALM1
Human Genome Epidemiology (HuGE) Navigator: CALM1 (19 documents)

Export disorders for CALM1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for CALM1 gene, integrated from 9 sources (see all 347):
(articles sorted by number of sources associating them with CALM1)

Utopia: connect your pdf to the dynamic
world of online information

Isolation and nucleotide sequence of a cDNA encoding human calmodulin. (PubMed id 6385987)^{1, 2, 3} Wawrzynczak E.J. and Perham R.N. (1984)
Solution NMR structure of Apo-calmodulin in complex with the IQ motif of human cardiac sodium channel NaV1.5. (PubMed id 21167176)^{1, 2} Chagot B. and Chazin W.J. (2011)
The CALM1 core promoter polymorphism is not associated with hip osteoarthritis in a United Kingdom Caucasian population. (PubMed id 16359877)^{1, 4} Loughlin J....Chapman K. (2006)
A functional single nucleotide polymorphism in the core promoter region of CALM1 is associated with hip osteoarthritis in Japanese. (PubMed id 15746150)^{1, 4} Mototani H....Ikegawa S. (2005)
Insights into voltage-gated calcium channel regulation from the structure of the CaV1.2 IQ domain-Ca2+/calmodulin complex. (PubMed id 16299511)^{1, 2} Van Petegem F.... Minor D.L. Jr. (2005)
Defective calmodulin-mediated nuclear transport of the sex- determining region of the Y chromosome (SRY) in XY sex reversal. (PubMed id 15746192)^{1, 2} Sim H.... Harley V.R. (2005)
Calcium/calmodulin regulates ubiquitination of the ubiquitin-specific protease TRE17/USP6. (PubMed id 16127172)^{1, 2} Shen C....Chou M.M. (2005)
Melatonin, an endogenous-specific inhibitor of estrogen receptor alpha via calmodulin. (PubMed id 15229223)^{1, 7} del Rio B....Ramos S. (2004)
Characterization of the human CALM2 calmodulin gene and comparison of the transcriptional activity of CALM1, CALM2 and CALM3. (PubMed id 9681195)^{1, 2} Toutenhoofd S.L.... Strehler E.E. (1998)
Structure of the human CALM1 calmodulin gene and identification of two CALM1-related pseudogenes CALM1P1 and CALM1P2. (PubMed id 7925473)^{1, 2} Rhyner J.A.... Strehler E.E. (1994)

(in PubMed, OMIM, and NCBI Bookshelf)
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 801	HGNC: 1442	AceView: CALM1	Ensembl:ENSG00000198668	euGenes: HUgn801
ECgene: CALM1	Kegg: 801	H-InvDB: CALM1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CALM1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for CALM1	Genetics and Cytogenetics in Oncology and Haematology
Protein Spotlight	http://web.expasy.org/spotlight/back_issues/sptlt105.shtml

Intellectual Property for CALM1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for CALM1 gene:
Search GeneIP for patents involving CALM1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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calmodulin 1 (phosphorylase kinase, delta)

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CALM1 (Gene Symbol)
Calmodulin 1 (Phosphorylase Kinase, Delta)
CALML2
PHKD
CAMI
DD132
CPVT4
CaM
Calmodulin
Phosphorylase Kinase, Delta Subunit
Prepro-Calmodulin 1
CALM
CAM
CAM1
CAM2
CAM3
CAMB
CAMC
CAMIII
CaM

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CALM1 Gene

calmodulin 1 (phosphorylase kinase, delta)

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