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Aliases for CALHM5 Gene

Aliases for CALHM5 Gene

  • Calcium Homeostasis Modulator Family Member 5 2 3
  • Family With Sequence Similarity 26 Member E 2 3 5
  • FAM26E 3 4 5
  • C6orf188 3 4
  • Family With Sequence Similarity 26, Member E 2
  • Chromosome 6 Open Reading Frame 188 2
  • Protein FAM26E 3
  • DJ493F7.3 3

External Ids for CALHM5 Gene

Previous HGNC Symbols for CALHM5 Gene

  • C6orf188
  • FAM26E

Summaries for CALHM5 Gene

GeneCards Summary for CALHM5 Gene

CALHM5 (Calcium Homeostasis Modulator Family Member 5) is a Protein Coding gene. An important paralog of this gene is CALHM6.

UniProtKB/Swiss-Prot for CALHM5 Gene

  • Pore-forming subunit of a voltage-gated ion channel.

Additional gene information for CALHM5 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALHM5 Gene

Genomics for CALHM5 Gene

Regulatory Elements for CALHM5 Gene

Enhancers for CALHM5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H116510 0.9 ENCODE 13 +0.6 601 2.6 PKNOX1 ATF1 ZBTB40 ZNF2 RAD21 CHAMP1 YY1 GATA2 ZNF366 FOS CALHM5 ENSG00000240050 TRAPPC3L CALHM6 RWDD1 CALHM4
GH06H116555 1.1 Ensembl ENCODE 9.2 +45.8 45757 3.6 PKNOX1 NFIB SIN3A ZNF366 SCRT2 RCOR1 CEBPB ELF1 ZEB2 ZNF217 RSPH4A CALHM6 CALHM4 ENSG00000244158 KRT18P22 CBX3P9 ENSG00000234117 CALHM5 TRAPPC3L RWDD1
GH06H116665 1.3 FANTOM5 ENCODE 7.4 +155.9 155857 3.8 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZUFSP CALHM5 KPNA5 RWDD1 DSE GC06P116597
GH06H116475 1.1 Ensembl ENCODE 7.3 -35.7 -35728 1.8 ELF3 BMI1 BATF RARA POLR2A ATF7 ETV6 NR2F6 RUNX3 CREM CALHM6 DSE CALHM5 ENSG00000244158 ENSG00000234117
GH06H116384 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4 -122.2 -122189 9.7 PKNOX1 BATF ZNF366 FOS ATF7 ETV6 RUNX3 CREM IKZF2 YY2 DSE CALHM6 CALHM4 CBX3P9 KRT18P22 ENSG00000244158 ENSG00000234117 TRAPPC3L ENSG00000240050 TSPYL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CALHM5 on UCSC Golden Path with GeneCards custom track

Promoters for CALHM5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000201680 655 1801 ZBTB40 ZNF2 RAD21 CHAMP1 YY1 GATA2 ZNF366 FOS ATF7 ZNF654

Genomic Locations for CALHM5 Gene

Genomic Locations for CALHM5 Gene
chr6:116,511,645-116,524,792
(GRCh38/hg38)
Size:
13,148 bases
Orientation:
Plus strand
chr6:116,832,808-116,845,955
(GRCh37/hg19)

Genomic View for CALHM5 Gene

Genes around CALHM5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALHM5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALHM5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALHM5 Gene

Proteins for CALHM5 Gene

  • Protein details for CALHM5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N5C1-FA26E_HUMAN
    Recommended name:
    Protein FAM26E
    Protein Accession:
    Q8N5C1
    Secondary Accessions:
    • B2RDJ9
    • B3KSR3

    Protein attributes for CALHM5 Gene

    Size:
    309 amino acids
    Molecular mass:
    35170 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CALHM5 Gene

Post-translational modifications for CALHM5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CALHM5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CALHM5 Gene

Domains & Families for CALHM5 Gene

Gene Families for CALHM5 Gene

Protein Domains for CALHM5 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CALHM5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N5C1

UniProtKB/Swiss-Prot:

FA26E_HUMAN :
  • Belongs to the FAM26 family.
Family:
  • Belongs to the FAM26 family.
genes like me logo Genes that share domains with CALHM5: view

Function for CALHM5 Gene

Molecular function for CALHM5 Gene

UniProtKB/Swiss-Prot Function:
Pore-forming subunit of a voltage-gated ion channel.

Gene Ontology (GO) - Molecular Function for CALHM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005261 cation channel activity IBA --
genes like me logo Genes that share ontologies with CALHM5: view

Phenotypes for CALHM5 Gene

GenomeRNAi human phenotypes for CALHM5:
genes like me logo Genes that share phenotypes with CALHM5: view

miRNA for CALHM5 Gene

miRTarBase miRNAs that target CALHM5

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CALHM5 Gene

Localization for CALHM5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CALHM5 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CALHM5 gene
Compartment Confidence
extracellular 5
plasma membrane 4

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CALHM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with CALHM5: view

Pathways & Interactions for CALHM5 Gene

SuperPathways for CALHM5 Gene

No Data Available

Interacting Proteins for CALHM5 Gene

Gene Ontology (GO) - Biological Process for CALHM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0034220 ion transmembrane transport IBA --
GO:0098655 cation transmembrane transport IEA --
genes like me logo Genes that share ontologies with CALHM5: view

No data available for Pathways by source and SIGNOR curated interactions for CALHM5 Gene

Drugs & Compounds for CALHM5 Gene

No Compound Related Data Available

Transcripts for CALHM5 Gene

mRNA/cDNA for CALHM5 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALHM5 Gene

No ASD Table

Relevant External Links for CALHM5 Gene

GeneLoc Exon Structure for
CALHM5
ECgene alternative splicing isoforms for
CALHM5

Expression for CALHM5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of CALHM5 Gene:

CALHM5
genes like me logo Genes that share expression patterns with CALHM5: view

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALHM5 Gene

Orthologs for CALHM5 Gene

This gene was present in the common ancestor of animals.

Orthologs for CALHM5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM26E 33 34
  • 99.57 (n)
dog
(Canis familiaris)
Mammalia FAM26E 33 34
  • 87.49 (n)
cow
(Bos Taurus)
Mammalia FAM26E 33 34
  • 87.27 (n)
rat
(Rattus norvegicus)
Mammalia Fam26e 33
  • 84.9 (n)
mouse
(Mus musculus)
Mammalia Fam26e 33 16 34
  • 83.6 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM26E 34
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM26E 34
  • 57 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM26E 33 34
  • 69.52 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101731009 33
  • 58.94 (n)
zebrafish
(Danio rerio)
Actinopterygii fam26e.1 33
  • 59.87 (n)
fam26e 34
  • 50 (a)
OneToMany
FAM26E (1 of 2) 34
  • 50 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea clhm-1 33 34
  • 40.16 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 15 (a)
OneToMany
Species where no ortholog for CALHM5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CALHM5 Gene

ENSEMBL:
Gene Tree for CALHM5 (if available)
TreeFam:
Gene Tree for CALHM5 (if available)

Paralogs for CALHM5 Gene

Paralogs for CALHM5 Gene

genes like me logo Genes that share paralogs with CALHM5: view

Variants for CALHM5 Gene

Sequence variations from dbSNP and Humsavar for CALHM5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000148544 -- 116,517,635(+) TATTT(G/T)GTCTT intron-variant, utr-variant-3-prime
rs1000343394 -- 116,521,338(+) AGGGT(G/T)GCTCA intron-variant, utr-variant-3-prime
rs1000378580 -- 116,514,237(+) AGTTT(A/G)TAATT intron-variant
rs1000543462 -- 116,521,197(+) AACAA(A/G)ATATA intron-variant, utr-variant-3-prime
rs1000914622 -- 116,520,958(+) AATTT(C/T)GGAGT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CALHM5 Gene

Variant ID Type Subtype PubMed ID
nsv830783 CNV gain 17160897
nsv523972 CNV gain 19592680
esv3610471 CNV loss 21293372
esv2663254 CNV deletion 23128226

Variation tolerance for CALHM5 Gene

Residual Variation Intolerance Score: 64.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.65; 31.61% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CALHM5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALHM5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALHM5 Gene

Disorders for CALHM5 Gene

Relevant External Links for CALHM5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALHM5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALHM5

No disorders were found for CALHM5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALHM5 Gene

Publications for CALHM5 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M … Moll S (Journal of proteomics 2013) 3 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 60

Products for CALHM5 Gene

Sources for CALHM5 Gene

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