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CALCRL Gene

protein-coding   GIFtS: 60

GC02M187918
calcitonin receptor-like
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CGRPR 1, 2, 3, 5
CRLR 1, 2, 5
Descriptions
CGRP type 1 receptor 3
Calcitonin receptor-like receptor 3
calcitonin receptor-like 2
External Ids
HGNC: 167091
Entrez Gene: 102032
UniProtKB: Q166023
Ensembl: ENSG000000649897
Search outside databases for aliases for CALCRL gene

Previous GC identifers: GC02M186419 GC02M186892 GC02M188171 GC02M188412 GC02M188035

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602
Function: Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for
adrenomedullin together with RAMP2 or RAMP3 (By similarity). The activity of this receptor is
mediated by G proteins which activate adenylyl cyclase

Gene Wiki entry for CALCRL

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CALCRL gene  

Entrez Gene cytogenetic band: 2q32.1   Ensembl cytogenetic band:  2q32.1   HGNC cytogenetic band: 2q21.1-q21.3

CALCRL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M187918:     (about GC identifiers)

Start:
187,916,091 bp from pter
End:
188,021,432 bp from pter
Size:
105,342 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000002.10  NT_005403.16  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602 (See protein sequence)
Recommended Name: Calcitonin gene-related peptide type 1 receptor precursor  
Size: 461 amino acids; 52929 Da
Subunit: Heterodimer of CALCRL and RAMP1, RAMP2 or RAMP3 (By similarity)
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: A8K6G5 A8KAD3 Q53S02 Q53TS5

REFSEQ proteins: NP_005786.1  

ENSEMBL proteins: 
ENSP00000376177 ENSP00000386972 ENSP00000387190 ENSP00000386599 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant CALCRL Protein
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (CRLR)
Human Recombinant Proteins from Abnova (CALCRL)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005886 plasma membrane IEA--
GO:0005887 integral to plasma membrane TAS7818539
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Antibodies for CALCRL: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of CALCRL
Sigma-Aldrich Antibodies for CALCRL
Browse R&D Systems for Antibodies
Antibodies from Abcam (CRLR), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (CALCRL)
Novus Biologicals Antibodies for CALCRL

Assays for CALCRL: 
Invitrogen Assays for CALCRL
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

5/6 InterPro domains/families (see all 6 ):
 IPR001879 GPCR_2_extracellular
 IPR003287 GCPR_2_calcitonin_rcpt-like
 IPR000832 GPCR_2_secretin-like
 IPR003289 GPCR_2_CGRP1_rcpt
 IPR017983 GPCR_2_secretin-like_CS


   GeneDecks  CALCRL for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q16602

ProtoNet protein and cluster: Q16602

3 Blocks protein families:
IPB000832 G-protein coupled receptors family 2 (secretin-like)
IPB003287 Calcitonin receptor family signature
IPB003289 Calcitonin gene-related peptide type 1 receptor signature


UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602
Similarity: Belongs to the G-protein coupled receptor 2 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (CALCRL)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (CALCRL)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005795

              Applied Biosystems Silencer® siRNAs for CALCRL

              Sigma-Aldrich siRNA and siRNA Panels for CALCRL  
                     Sigma-Aldrich shRNA Panels and shRNA for CALCRL  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Millipore Clones for the Expression of CALCRL
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005795
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005795
                                 untagged cDNA clone in CMV expression vector: NM_005795 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_005795

UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602
Function: Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for
adrenomedullin together with RAMP2 or RAMP3 (By similarity). The activity of this receptor is
mediated by G proteins which activate adenylyl cyclase

7 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Calcrl):

digestive/alimentaryhomeostasis/metabolismimmune systemlethality-prenatal/perinatal
muscleskin/coat/nails

1 Gene Ontology (GO) molecular function term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004948 calcitonin receptor activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


1 Millipore Pathway for CALCRL
 Adenylate cyclase-activating neuropeptides

   GeneDecks  CALCRL for the pathways selected above  
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2 Kegg Pathways  (Kegg details for CALCRL):
 hsa04080 Neuroactive ligand-receptor interaction
 hsa04270 Vascular smooth muscle contraction

   GeneDecks  CALCRL for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  CALCRL 

1 Gene Ontology (GO) biological process term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0007187 G-protein signaling, coupled to cyclic nucleotide second messenger TAS7818539
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Sigma-Aldrich Small Molecules for CALCRL:
Antagonist

Compounds for CALCRL available from Tocris Bioscience
CompoundAction CAS number
CRSP-1Endogenous central CT receptor agonist[697327-12-1]
CGRP 8-37 (human)CGRP1 receptor antagonist[119911-68-1]
CGRP 8-37 (rat)CGRP1 receptor antagonist
SUN-B 8155Non-peptide calcitonin (CT) receptor agonist[345893-91-6]
CGRP (rat)Potent vasodilator[96827-03-1]
About this table


4 Novoseek chemical compound relationships for CALCRL gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
bibn 4096 bs 89.41 4 12183333 (3)
cyclic amp 32.17 2 12630807 (1)
nitric oxide 1.31 5 9516404 (1), 14717924 (1), 19441274 (1)
potassium 0.00 1 9877154 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (CALCRL)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (CALCRL)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005795

              Sigma-Aldrich siRNA and siRNA Panels for CALCRL  
                     Sigma-Aldrich shRNA Panels and shRNA for CALCRL  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_005795  

REFSEQ mRNAs for CALCRL gene: 

NM_005795.4   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_005795  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005795
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005795
                                 untagged cDNA clone in CMV expression vector: NM_005795 

Additional cDNA sequence: 

AK291630.1 AK292998.1 AY389506.1 DQ280491.1 L76380.1 U17473.1 

9 DOTS entries:

DT.210868  DT.120960866  DT.99949950  DT.120960838  DT.91989109  DT.120960773  DT.120960823  DT.120960762 
DT.91742361 

24/77 AceView cDNA sequences (see all 77 ):

AA961493 N54728 AA436933 BX646999 NM_005795 AW272754 BX471114 BU677790 
AA885023 AI500611 AY389506 BG546194 AI478743 AA975301 CB052425 BQ002778 
AI200304 AI682490 BE858956 BX474361 BM665935 U17473 AW337575 BX494141 

highest scoring ESTs for CALCRL:

L76380 AL602685 U17473 AA298025 AA298652 AA436933 AA757351 AA885023 AA961493 AA975301 

Unigene Cluster for CALCRL:

Calcitonin receptor-like
Hs.470882  [show with all ESTs]
Unigene Representative Sequence: NM_005795


GeneLoc Exon Structure

5/11 Alternative Splicing Database (ASD) splice patterns (SP) for CALCRL (see all 11 )

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1:                    -     -           -           -                                                                     
SP2:                    -                 -           -                                                                     
SP3:                    -     -     -     -           -     -     -     -                                                   
SP4:                                      -                                                                                 
SP5:                    -     -     -     -           -                                                                     

About this scheme

ECgene alternative splicing isoforms for CALCRL

4 Ensembl transcripts including schematic representations:
ENST00000392370  ENST00000409998  ENST00000410068  ENST00000410102  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

CALCRL expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for CALCRL

1 / 2 / 3

9 probe-sets matching CALCRL gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
59645_at2, 3 U95-B 1 1.00 1.00 0.96 0.78 AI741128 0.20 1.00 0.72 1
34995_at2, 3 U95-A 1 1.00 1.00 0.93 1.09 L76380 1.00 1.00 1.00 1
42475_at2, 3 U95-B 1 0.94 1.00 0.96 1.16 T94540 0.20 1.00 0.72 1

234996_at2, 3 U133-B 1 1.00 1.00 -- -- AI478743 0.20 1.00 0.72 1

206331_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005795 0.60 1.00 0.82 1

210815_s_at2, 3 U133-A 1 1.00 1.00 -- -- U17473 0.80 1.00 0.91 1

234996_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

206331_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

210815_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  CALCRL for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.470882

Expression variation in blood from EXPOLDB for CALCRL

UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602
Tissue specificity: Predominantly expressed in the lung and heart

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for CALCRL gene from 5/11 species (see all 11 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
CALCRL1   -- calcitonin receptor-like 90.32(n)
94.59(a)
488438  XM_545560.2  XP_545560.2 
chimpanzee
(Pan troglodytes)
CALCRL1   -- calcitonin receptor-like 99.78(n)
100(a)
459810  XM_001161496.1  XP_001161496.1 
cow
(Bos taurus)
CALCRL1   -- calcitonin receptor-like 90.53(n)
92.41(a)
527140  XM_605529.3  XP_605529.2 
rat
(Rattus norvegicus)
Calcrl1   -- calcitonin receptor-like 86.23(n)
90.87(a)
25029  NM_012717.1  NP_036849.1 
mouse
(Mus musculus)
Calcrl1, 5 25
calcitonin receptor-like1, 5 85.29(n)1
90.22(a)1
545981  NM_018782.11  NP_061252.11 
 AB0155955  AF1465255  (see all 13)
About this table        Species with no ortholog for CALCRL

ENSEMBL Gene Tree for CALCRL
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for CALCRL gene
CALCR2  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/549 NCBI SNPs in CALCRL are shown (see all 549 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 207)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 2 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs6960921,2
A,C,F,H,O187918459(-) CAATCC/TTACTT 1 -- ut3119Minor allele frequency- G:0.02NA EA NS MN EU WA 3411
rs67537001,2
C,F,H187960656(+) TCCAGA/TCTCAA 1 -- ut51 ese34Minor allele frequency- T:0.26EU EA WA 418
rs133919091,2
C,F,H187958520(+) ACCATA/TAAAAA 1 F/L mis14Minor allele frequency- T:0.04EU EA WA 406
rs8608591,2
A,C,F187917954(+) ATTCAG/ATAAAA 1 -- ut313Minor allele frequency- A:0.33NA 140
rs340105531,2
C,F187932205(-) TGCTAG/TAAGCT 1 R/I mis15Minor allele frequency- T:0.01NA EU EA WA 476
rs133968691,2
F,H187917388(+) TGTTTC/AATCCA 1 -- ut314Minor allele frequency- A:0.01EU EA WA 414
rs16322821,2
A,F187916257(+) TATCAA/GTGAAA 1 -- ut311Minor allele frequency- G:0.28MN 184
--
rs15118791,2
A,C187915830(+) atgagC/Ttaaac 1 -- ng510--------
rs6985771,2
C,H187958546(+) AAAATA/TCAGGG 1 Y/N mis18Minor allele frequency- T:0.00MN EU EA WA NA 664
rs134050401,2
F,H188021827(+) GTTTTT/AAAATC 1 -- ng31 tfbs34Minor allele frequency- A:0.02EU EA WA 396
About this table

HapMap Linkage Disequilibrium images for CALCRL (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 114190

10/13 Novoseek disease relationships for CALCRL gene (see all 13 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
pheochromocytoma 45.78 4 17102095 (2), 16178438 (1)
migraine 32.61 6 17508187 (2), 19328288 (1)
glioma 12.67 9 14747444 (4), 16719406 (2), 11943713 (1)
glioblastoma 11.04 2 11943713 (1)
glioblastoma multiforme 10.56 1 16719406 (1)
preeclampsia 4.42 7 19441274 (2), 11905404 (1), 15623815 (1)
pancreatic cancer 0.00 5 17290391 (3), 17363587 (1)
tumors 0.00 3 17020966 (1), 16166333 (1), 17363587 (1)
cardiac hypertrophy 0.00 1 15974887 (1)
heart failure 0.00 4 15300632 (1)
About this table

Genetic Association Database: CALCRL
Human Genome Epidemiology Navigator: CALCRL (2 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/209 PubMed articles for CALCRL gene (see all 209 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 10203 HGNC: 16709 AceView: CALCRL Ensembl:ENSG00000064989 euGenes: HUgn10203
ECgene: CALCRL H-InvDB: CALCRL
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for CALCRL:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for CALCRL-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for CALCRL Antibodies for CALCRL
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for CALCRL Small molecules for CALCRL
 "Your Favorite Gene" Pathwaysfeedback


  
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 Tocris compounds for CALCRL




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for CALCRL

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