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Aliases & Descriptions for CALCRL
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CGRPR 1, 2, 3, 5 | | CRLR 1, 2, 5 |
| | | Descriptions |
|---|
| CGRP type 1 receptor 3 | | Calcitonin receptor-like receptor 3 | | calcitonin receptor-like 2 |
|
| | Search outside databases for aliases for CALCRL genePrevious GC identifers: GC02M186419 GC02M186892 GC02M188171 GC02M188412 GC02M188035 |
Summaries for CALCRL(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602Function: Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP2 or RAMP3 (By similarity). The activity of this receptor is mediated by G proteins which activate adenylyl cyclaseGene Wiki entry for CALCRL |
Genomic Location for CALCRL
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CALCRL gene 
Entrez Gene cytogenetic band: 2q32.1 Ensembl cytogenetic band: 2q32.1 HGNC cytogenetic band: 2q21.1-q21.3CALCRL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M187918:
(about GC identifiers)
Start:
|
187,916,091 bp from pter |
End:
|
188,021,432 bp from pter |
Size:
|
105,342 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000002.10 NT_005403.16
| Proteins for CALCRL
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602 (See
protein sequence)Recommended Name: Calcitonin gene-related peptide type 1 receptor precursor Size: 461 amino acids; 52929 Da
Subunit: Heterodimer of CALCRL and RAMP1, RAMP2 or RAMP3 (By similarity)
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: A8K6G5 A8KAD3 Q53S02 Q53TS5REFSEQ proteins: NP_005786.1
ENSEMBL proteins: ENSP00000376177 ENSP00000386972 ENSP00000387190 ENSP00000386599
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CALCRL: Assays for CALCRL: | Protein
Domains/ Families for CALCRL(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q16602
ProtoNet protein and cluster: Q16602 3 Blocks protein families: IPB000832 G-protein coupled receptors family 2 (secretin-like) IPB003287 Calcitonin receptor family signature IPB003289 Calcitonin gene-related peptide type 1 receptor signature
UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602Similarity: Belongs to the G-protein coupled receptor 2 family | Gene Function for CALCRL
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005795
Applied Biosystems Silencer® siRNAs for CALCRL
Sigma-Aldrich siRNA and siRNA Panels for CALCRL  Sigma-Aldrich shRNA Panels and shRNA for CALCRL  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005795                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005795                                  untagged cDNA clone in CMV expression vector: NM_005795 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005795
UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602Function: Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP2 or RAMP3 (By similarity). The activity of this receptor is mediated by G proteins which activate adenylyl cyclase7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Calcrl):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004948 | calcitonin receptor activity |
IEA | -- | About this table | Pathways & Interactions for CALCRL
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for CALCRL 
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007187 | G-protein signaling, coupled to cyclic nucleotide second messenger |
TAS | 7818539 | About this table
|
Drugs & Compounds for CALCRL(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for CALCRL: Antagonist |
Compounds for CALCRL available from Tocris Bioscience About this table
4 Novoseek chemical compound relationships for CALCRL gene
About this table
|
Transcripts for CALCRL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005795
Sigma-Aldrich siRNA and siRNA Panels for CALCRL  Sigma-Aldrich shRNA Panels and shRNA for CALCRL  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005795 REFSEQ mRNAs for CALCRL gene: NM_005795.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005795               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005795                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005795                                  untagged cDNA clone in CMV expression vector: NM_005795  Additional cDNA sequence: AK291630.1 AK292998.1 AY389506.1 DQ280491.1 L76380.1 U17473.1 9 DOTS entries: DT.210868 DT.120960866 DT.99949950 DT.120960838 DT.91989109 DT.120960773 DT.120960823 DT.120960762 DT.91742361 24/77 AceView cDNA sequences (see all 77
):AA961493 N54728 AA436933 BX646999 NM_005795 AW272754 BX471114 BU677790 AA885023 AI500611 AY389506 BG546194 AI478743 AA975301 CB052425 BQ002778 AI200304 AI682490 BE858956 BX474361 BM665935 U17473 AW337575 BX494141
highest scoring ESTs for CALCRL:L76380 AL602685 U17473 AA298025 AA298652 AA436933 AA757351 AA885023 AA961493 AA975301 Unigene Cluster for CALCRL: Calcitonin receptor-like Hs.470882 [show with all ESTs]Unigene Representative Sequence: NM_005795
GeneLoc Exon Structure
5/11 Alternative Splicing Database (ASD) splice patterns (SP) for CALCRL (see all 11
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | · | 8c | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | |
| SP1: | |   | |   | |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CALCRL
4 Ensembl transcripts including schematic representations: ENST00000392370
ENST00000409998
ENST00000410068
ENST00000410102
|
Expression for CALCRL
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CALCRL expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CALCRL
1 / 2 / 3 9 probe-sets matching CALCRL gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.470882
Expression variation in blood from EXPOLDB for CALCRL UniProtKB/Swiss-Prot: CALRL_HUMAN, Q16602Tissue specificity: Predominantly expressed in the lung and heart |
Orthologs for CALCRL
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CALCRL gene from 5/11 species (see all 11
)
About this table Species with no ortholog for CALCRL
ENSEMBL Gene Tree for CALCRL | Paralogs for CALCRL(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CALCRL gene
- CALCR2
|
SNPs/Variants for CALCRL(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CALCRL (up to first 250kb)
|
Disorders & Mutations for CALCRL
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 114190
10/13 Novoseek disease relationships for CALCRL gene (see all 13
)
About this table
Genetic Association Database: CALCRL Human Genome Epidemiology Navigator: CALCRL (2 documents)
|
Medical News for CALCRL(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CALCRL (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/209 PubMed articles for CALCRL gene (see all 209
):- A cDNA encoding the calcitonin gene-related peptide type 1 receptor. (PubMed id 8626685)2, 3, 4 Aiyar N....Li Y. (1996)
- A human orphan calcitonin receptor-like structure. (PubMed id 7818539)2, 3, 4 Fluehmann B.... Born W. (1995)
- Association study of calcitonin-receptor-like receptor gene in essential hypertension. (PubMed id 15797661)1, 3, 6 Sano M....Kokubun S. (2005)
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)3, 4 Zhang Z. and Henzel W.J. (2004)
- Glycosylation of human CRLR at Asn123 is required for ligand binding and signaling. (PubMed id 11389975)1, 3 Kamitani S. and Sakata T. (2001)
- Receptor activity modifying proteins interaction with human and porcine calcitonin receptor-like receptor (CRLR) in HEK-293 cells. (PubMed id 11693189)1, 3 Aiyar N....Nambi P. (2001)
- Protein-protein interaction and not glycosylation determines the binding selectivity of heterodimers between the calcitonin receptor-like receptor and the receptor activity-modifying proteins. (PubMed id 11387328)1, 3 Hilairet S....Bouvier M. (2001)
- Visualization of the calcitonin receptor-like receptor and its receptor activity-modifying proteins during internalization and recycling. (PubMed id 10882736)1, 3 Kuwasako K....Sakata T. (2000)
- Assembly and signaling of CRLR and RAMP1 complexes assessed by BRET. (PubMed id 17503773)1, 3 Heroux M....Bouvier M. (2007)
- The extracellular domain of receptor activity-modifying protein 1 is sufficient for calcitonin receptor-like receptor function. (PubMed id 12574158)1, 3 Fitzsimmons T.J....Wank S.A. (2003)
|
Search for CALCRL
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CALCRL
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CALCRL
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CALCRL(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CALCRL(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CALCRL:

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| | Recombinant Proteins (CRLR) | | Antibodies (CRLR) |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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