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Aliases & Descriptions for CALCA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CALC1 2 , 3 , 5 CGRP 2 CGRP-I 2 , 3 CGRP1 2 CT 2 KC 2 MGC126648 2 calcitonin 2 katacalcin 2
Descriptions Alpha-type CGRP 3 Calcitonin gene-related peptide I 3 calcitonin 1 1 , 2 calcitonin-related polypeptide alpha 2 calcitonin/calcitonin-related polypeptide, alpha 2
Search outside databases for aliases for CALCA genePrevious GC identifers: GC11M016170 GC11M015736 GC11M015027 GC11M014952
Summaries for CALCA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CALCA : Calcitonin is a peptide hormone synthesized by the parafollicular cells of the thyroid. It causesreduction in serum calcium, an effect opposite to that of parathyroid hormone (PTH; MIM168450).[supplied by OMIM] UniProtKB/Swiss-Prot: CALC_HUMAN, P01258 Function : Katacalcin is a potent plasma calcium-lowering peptide
Gene Wiki entry for CALCA (Calcitonin)
Genomic Location for CALCA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CALCA gene Entrez Gene cytogenetic band: 11p15.2-p15.1 Ensembl cytogenetic band: 11p15.2 HGNC cytogenetic band: 11p15.2 CALCA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M014945:
(about GC identifiers )
Start:
14,944,792 bp from pter
End:
14,950,408 bp from pter
Size:
5,617 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for CALCA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CALCA_HUMAN, P06881 (See
protein sequence )Recommended Name: Calcitonin gene-related peptide 1 precursor Size : 128 amino acids; 13899 Da
PDB structures from and Proteopedia : 1LS7 (3D)
 
Secondary accessions : Q93048 Q9UCP0Alternative splicing : 3 isoforms : P06881-1 P01258-1 P01258-2
UniProtKB/Swiss-Prot: CALC_HUMAN, P01258 (See
protein sequence )Recommended Name: Calcitonin precursor Size : 141 amino acids; 15467 Da
Subcellular location : Secreted
PDB structures from and Proteopedia : 2JXZ (3D)
 
Secondary accessions : Q13935 Q13937 Q52LX7Alternative splicing : 3 isoforms : P01258-1 P01258-2 P06881-1
REFSEQ proteins (3 alternative transcripts):
NP_001029124.1 NP_001029125.1 NP_001732.1 ENSEMBL proteins: ENSP00000379657 ENSP00000331746 ENSP00000352663 ENSP00000354286 ENSP00000379659 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8
):
About this table Antibodies for CALCA: Assays for CALCA:
Protein
Domains/ Families for CALCA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P06881 Graphical View of Domain Structure for InterPro Entry P01258 ProtoNet protein and cluster: P06881
2 Blocks protein families : IPB000443 Islet amyloid protein (amylin) signature IPB002163 Beta-type calcitonin signature UniProtKB/Swiss-Prot: CALCA_HUMAN, P06881 Similarity : Belongs to the calcitonin family
UniProtKB/Swiss-Prot: CALC_HUMAN, P01258 Similarity : Belongs to the calcitonin family
Gene Function for CALCA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001741 Applied Biosystems Silencer ® siRNAs for CALCA Sigma-Aldrich siRNA and siRNA Panels for CALCA Sigma-Aldrich shRNA for CALCA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033952                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033952                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001033952  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001741 UniProtKB/Swiss-Prot: CALCA_HUMAN, P06881 Function : CGRP induces vasodilation. It dilates a variety of vessels including the coronary,cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitteror neuromodulator role. It also elevates platelet cAMP
UniProtKB/Swiss-Prot: CALC_HUMAN, P01258 Function : Calcitonin causes a rapid but short-lived drop in the level of calcium and phosphate inblood by promoting the incorporation of those ions in the bones Function : Katacalcin is a potent plasma calcium-lowering peptide
Genatlas biochemistry entry for CALCA :calcitonin,3.4kDa and calcitonin related peptide,alpha,3.8kDa,formed by alternative splicing of thesame gene,expressed in thyroid C cells,involved in calcium homeostasis,mediating the effects ofIndian Hedgehog and PTH related peptide on chondrocyte differentiation,also expressed in parts ofthe nervous and endocrine system,potent vasodilatator and hypotensor
8 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Calca) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CALCA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for CALCA 5/82 Interacting proteins for CALCA (ENSP00000331746 3 P01258 2 ) via UniProtKB, MINT, and/or STRING (see all 82
)About this table 5/33 Gene Ontology (GO) biological process terms (links to tree view) (see all 33
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001935 endothelial cell proliferation
IDA 17267696 GO:0001944 vasculature development
IDA 17267696 GO:0001976 neurological system process involved in regulation of systemic arterial blood pressure
IDA 10642343 GO:0001984 vasodilation of artery during baroreceptor response to increased systemic arterial blood pressure
IEA -- GO:0002027 regulation of heart rate
IEA --
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Drugs & Compounds for CALCA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for CALCA available from Tocris Bioscience About this table 10/29 Novoseek chemical compound relationships for CALCA gene (see all 29
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
bibn 4096 bs
88.26
44
10711339 (4), 11755165 (2), 10988349 (2), 11804624 (2) (see all 24 )
calcium
80.58
1167
16014619 (9), 11695068 (6), 9440370 (6), 10707893 (6) (see all 99 )
elcatonin
76.66
40
10220278 (5), 7669941 (3), 8181470 (2), 17707708 (2) (see all 13 )
hydroxyproline
67.63
33
8339504 (3), 2389624 (2), 1796722 (2), 1818759 (1) (see all 28 )
strontium ranelate
67.30
11
15170434 (1), 16301192 (1), 17477926 (1), 16709313 (1) (see all 11 )
ac 187
66.28
3
10433998 (1), 10205019 (1)
1-piperidinecarboxamide
65.56
1
15464043 (1)
i-app
64.70
77
9221931 (7), 1876601 (6), 8323757 (4), 7802654 (4) (see all 24 )
denosumab
63.81
3
19249985 (1), 19028360 (1)
amylinamide
63.18
4
2223054 (3), 8182554 (1)
About this table 1 PharmGKB drug compound relationship for CALCA gene About this table
Transcripts for CALCA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001741 Sigma-Aldrich siRNA and siRNA Panels for CALCA Sigma-Aldrich shRNA for CALCA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001033952 NM_001033953 NM_001741
REFSEQ mRNAs for CALCA gene (3 alternative transcripts): NM_001033952.1 NM_001033953.1 NM_001741.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001033952 NM_001033953 NM_001741
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033952                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033952                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001033952  
Additional cDNA sequence: BC069684.1 BC069704.1 BC069760.1 BC069778.1 BC093753.1 BC101599.1 BC143562.1 K03512.1 K03513.1 M26095.1 M64486.1 X00356.1 X02330.1 X03662.1
4 DOTS entries : DT.86840457 DT.100016988 DT.111153 DT.102824295
24/43 AceView cDNA sequences (see all 43
):BX094781 AW296074 M64486 BC069760 BF447272 X00356 AI695720 NM_001741 X03662 BC069704 CD612756 BF942171 X02330 BC069778 M26095 BC069684 CB048118 CD612752 CD612754 BF942434 K03512 AA716058 BF942073 CB048117
highest scoring ESTs for CALCA :BC069684 BC069704 BC069760 BC069778 CD612752 CD612756 M26095 M64486 X00356 X03662
Unigene Cluster for CALCA: Calcitonin-related polypeptide alpha Hs.37058 [show with all ESTs ] Unigene Representative Sequence: X02330 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for CALCA ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b SP1 :     -           SP2 :              
About this scheme ECgene alternative splicing isoforms for CALCA 5 Ensembl transcripts including schematic representations : ENST00000396372
ENST00000331587
ENST00000359642
ENST00000361010
ENST00000396374
Expression for CALCA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CALCA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CALCA 1 / 2 / 3
10 probe-sets matching CALCA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTAATGCTGTSOURCE GeneReport for Unigene cluster: Hs.37058 Expression variation in blood from EXPOLDB for CALCA
Orthologs for CALCA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CALCA gene from 2 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
CRSP-21
--
calcitonin receptor-stimulating peptide-2
74.54(n) 59.06(a)
403414 NM_001002947.1 NP_001002947.1
mouse (Mus musculus)
Calca5
7 (54.00 cM)
calcitonin/calcitonin-related polypeptide, alpha
--
X97991
About this table Species with no ortholog for CALCA ENSEMBL Gene Tree for CALCA Paralogs for CALCA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CALCA gene CALCB 2
SNPs/Variants for CALCA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CALCA (up to first 250kb)
Disorders & Mutations for CALCA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 114130
10/96 Novoseek disease relationships for CALCA gene (see all 96
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
thyroid carcinoma medullary
95.66
331
1595326 (7), 2112816 (4), 11735017 (4), 17051143 (4) (see all 99 )
osteoporosis
87.83
477
2035172 (7), 8837547 (6), 2188043 (4), 7917799 (4) (see all 99 )
carcinoma medullary
87.02
62
15779075 (4), 1350867 (2), 7716641 (2), 9021721 (2) (see all 51 )
osteoporosis postmenopausal
86.50
140
11810415 (3), 8154311 (3), 7748920 (3), 15293868 (3) (see all 99 )
men 2a
84.72
38
8094268 (3), 7638742 (3), 12437249 (2), 1677783 (2) (see all 27 )
multiple endocrine neoplasia
83.75
4
1351314 (1), 16472416 (1), 1971777 (1), 1352395 (1)
hypercalcemia
81.31
166
17681097 (4), 16143533 (4), 2137363 (4), 11225473 (3) (see all 99 )
bone loss
79.24
165
10100579 (4), 8461542 (4), 1933614 (4), 8992875 (4) (see all 99 )
thyroid carcinoma, familial medullary
78.94
11
2112816 (1), 8099830 (1), 10474127 (1), 12437249 (1) (see all 11 )
hyperparathyroidism
68.29
9
15526839 (2), 7752492 (1), 8966142 (1), 9387131 (1) (see all 7 )
About this table Human Gene Mutation Database : CALCA Genetic Association Database: CALCA Human Genome Epidemiology Navigator: CALCA (10 documents)
Medical News for CALCA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CALCA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/2245 PubMed articles for CALCA gene (see all 2245
): Association of the calcitonin gene (CA) polymorphism with bone mass and bone responsiveness to hormone therapy in postmenopausal Korean women. (PubMed id 14627864) 3, 6, 7 Kim J.G....Lee J.Y. (2003) The complete sequence of human preprocalcitonin. (PubMed id 6546550) 2, 3, 4 le Moullec J.-M.... Moukhtar M.S. (1984) Calcitonin gene polymorphism CALCA-624 (T/C) and ovarian cancer. (PubMed id 15880427) 3, 6 Goodman M.T....Ness R.B. (2005) An unappreciated role for RNA surveillance. (PubMed id 14759258) 3, 4 Hillman R.T.... Brenner S.E. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Identification of four novel polymorphisms in the calcitonin/alpha-CGRP (CALCA) gene and an investigation of their possible associations with Parkinson disease, schizophrenia, and manic depression. (PubMed id 11317366) 3, 6 Buervenich S....Olson L. (2001) Association of bone mineral density with a dinucleotide repeat polymorphism at the calcitonin (CT) locus. (PubMed id 11185743) 3, 6 Miyao M....Ouchi Y. (2000) A 1H NMR study of human calcitonin in solution. (PubMed id 2001366) 3, 4 Motta A.... Bovermann G. (1991) A novel calcitonin carboxyl-terminal peptide produced in medullary thyroid carcinoma by alternative RNA processing of the calcitonin/calcitonin gene-related peptide gene. (PubMed id 1761559) 3, 4 Minvielle S.... Lasmoles F. (1991) Structure and methylation of the human calcitonin/alpha-CGRP gene. (PubMed id 2571128) 3, 4 Broad P.M.... Craig R.K. (1989)
Search for CALCA
(in PubMed ,
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Genome Databases showing CALCA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CALCA
(According to HUGE )
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--
Specialized Databases showing CALCA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
NIEHS-SNPs http://egp.gs.washington.edu/data/calca/ Wikipedia http://en.wikipedia.org/wiki/Calcitonin
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-- Services for CALCA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CALCA:
Tocris compounds for CALCA
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009