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Aliases for CALB1 Gene

Aliases for CALB1 Gene

  • Calbindin 1, 28kDa 2 3
  • Vitamin D-Dependent Calcium-Binding Protein, Avian-Type 3 4
  • Calbindin D28 3 4
  • D-28K 3 4
  • Calbindin 1, (28kD) 3
  • RTVL-H Protein 3
  • Calbindin 3
  • CAB27 4
  • CALB 3

External Ids for CALB1 Gene

Previous HGNC Symbols for CALB1 Gene

  • CALB

Previous GeneCards Identifiers for CALB1 Gene

  • GC08M089502
  • GC08M090803
  • GC08M091027
  • GC08M091140
  • GC08M091070
  • GC08M086281

Summaries for CALB1 Gene

Entrez Gene Summary for CALB1 Gene

  • The protein encoded by this gene is a member of the calcium-binding protein superfamily that includes calmodulin and troponin C. Originally described as a 27 kDa protein, it is now known to be a 28 kDa protein. It contains four active calcium-binding domains, and has two modified domains that are thought to have lost their calcium binding capability. This protein is thought to buffer entry of calcium upon stimulation of glutamate receptors. Depletion of this protein was noted in patients with Huntington disease. [provided by RefSeq, Jan 2015]

GeneCards Summary for CALB1 Gene

CALB1 (Calbindin 1, 28kDa) is a Protein Coding gene. Diseases associated with CALB1 include subependymal giant cell astrocytoma and synucleinopathy. Among its related pathways are Transcription_Role of VDR in regulation of genes involved in osteoporosis and Neuroscience. GO annotations related to this gene include calcium ion binding and vitamin D binding. An important paralog of this gene is CALB2.

UniProtKB/Swiss-Prot for CALB1 Gene

  • Buffers cytosolic calcium. May stimulate a membrane Ca(2+)-ATPase and a 3,5-cyclic nucleotide phosphodiesterase

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALB1 Gene

Genomics for CALB1 Gene

Regulatory Elements for CALB1 Gene

Genomic Location for CALB1 Gene

Start:
90,058,608 bp from pter
End:
90,095,475 bp from pter
Size:
36,868 bases
Orientation:
Minus strand

Genomic View for CALB1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CALB1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALB1 Gene

Proteins for CALB1 Gene

  • Protein details for CALB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P05937-CALB1_HUMAN
    Recommended name:
    Calbindin
    Protein Accession:
    P05937
    Secondary Accessions:
    • B2R696
    • B7Z9J4

    Protein attributes for CALB1 Gene

    Size:
    261 amino acids
    Molecular mass:
    30025 Da
    Quaternary structure:
    • Interacts with RANBP9.

    Alternative splice isoforms for CALB1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CALB1 Gene

Proteomics data for CALB1 Gene at MOPED

Post-translational modifications for CALB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CALB1 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for CALB1 (CALB1)

No data available for DME Specific Peptides for CALB1 Gene

Domains for CALB1 Gene

Gene Families for CALB1 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for CALB1 Gene

Graphical View of Domain Structure for InterPro Entry

P05937

UniProtKB/Swiss-Prot:

CALB1_HUMAN :
  • P05937
Domain:
  • This protein has four functional calcium-binding sites; potential sites II and VI have lost affinity for calcium
  • Contains 5 EF-hand domains.
Family:
  • Belongs to the calbindin family.
genes like me logo Genes that share domains with CALB1: view

Function for CALB1 Gene

Molecular function for CALB1 Gene

GENATLAS Biochemistry: calbindin (28kDa),vitamin D dependent calcium binding protein 1,from the intestine
UniProtKB/Swiss-Prot Function: Buffers cytosolic calcium. May stimulate a membrane Ca(2+)-ATPase and a 3,5-cyclic nucleotide phosphodiesterase

Gene Ontology (GO) - Molecular Function for CALB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005499 vitamin D binding IEA --
GO:0005509 calcium ion binding IMP 18359862
GO:0005515 protein binding IPI 16763551
GO:0008270 zinc ion binding IMP 18359862
genes like me logo Genes that share ontologies with CALB1: view
genes like me logo Genes that share phenotypes with CALB1: view

Animal Models for CALB1 Gene

MGI Knock Outs for CALB1:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CALB1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for CALB1 Gene

Localization for CALB1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CALB1 Gene COMPARTMENTS Subcellular localization image for CALB1 gene
Compartment Confidence
nucleus 5
cytoskeleton 3
cytosol 3
endoplasmic reticulum 2
mitochondrion 2
plasma membrane 2
extracellular 1

Gene Ontology (GO) - Cellular Components for CALB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IDA 16928804
GO:0005737 cytoplasm --
GO:0005829 cytosol IEA --
GO:0030424 axon ISS --
genes like me logo Genes that share ontologies with CALB1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CALB1 Gene

Pathways for CALB1 Gene

genes like me logo Genes that share pathways with CALB1: view

Pathways by source for CALB1 Gene

2 Cell Signaling Technology pathways for CALB1 Gene
1 GeneGo (Thomson Reuters) pathway for CALB1 Gene

PCR Array Products

Gene Ontology (GO) - Biological Process for CALB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007611 learning or memory --
GO:0007614 short-term memory IMP 22796338
GO:0007616 long-term memory IMP 22796338
GO:0007626 locomotory behavior IEA --
GO:0010842 retina layer formation IEA --
genes like me logo Genes that share ontologies with CALB1: view

Compounds for CALB1 Gene

(1) HMDB Compounds for CALB1 Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2

(42) Novoseek inferred chemical compound relationships for CALB1 Gene

Compound -log(P) Hits PubMed IDs
gaba 65.3 34
calcium 60.4 100
choline 54.4 18
happ 50.6 2
glutamate 48.8 24
genes like me logo Genes that share compounds with CALB1: view

Transcripts for CALB1 Gene

Unigene Clusters for CALB1 Gene

Calbindin 1, 28kDa:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CALB1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALB1 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b
SP1: - - - - -
SP2: - - -
SP3: -
SP4:
SP5:

Relevant External Links for CALB1 Gene

GeneLoc Exon Structure for
CALB1
ECgene alternative splicing isoforms for
CALB1

Expression for CALB1 Gene

mRNA expression in normal human tissues for CALB1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CALB1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (9.9), Brain - Caudate (basal ganglia) (8.5), Kidney - Cortex (6.5), Brain - Cerebellum (6.3), and Brain - Putamen (basal ganglia) (6.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CALB1 Gene

SOURCE GeneReport for Unigene cluster for CALB1 Gene Hs.65425

genes like me logo Genes that share expressions with CALB1: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for CALB1 Gene

Orthologs for CALB1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CALB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CALB1 35
  • 99.87 (n)
  • 100 (a)
CALB1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CALB1 35
  • 93.87 (n)
  • 98.47 (a)
CALB1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CALB1 35
  • 93.87 (n)
  • 98.47 (a)
CALB1 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Calb1 35
  • 92.46 (n)
  • 98.47 (a)
Calb1 16
Calb1 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CALB1 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CALB1 36
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Calb1 35
  • 91.32 (n)
  • 98.47 (a)
chicken
(Gallus gallus)
Aves CALB1 35
  • 78.85 (n)
  • 79.62 (a)
CALB1 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CALB1 36
  • 75 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.459 35
tropical clawed frog
(Silurana tropicalis)
Amphibia calb1 35
  • 75.77 (n)
  • 76.92 (a)
zebrafish
(Danio rerio)
Actinopterygii calb1 35
  • 69.78 (n)
  • 70.43 (a)
calb1 36
  • 65 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Cbp53E 36
  • 38 (a)
OneToMany
Cbp53E 37
  • 44 (a)
Species with no ortholog for CALB1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CALB1 Gene

ENSEMBL:
Gene Tree for CALB1 (if available)
TreeFam:
Gene Tree for CALB1 (if available)

Paralogs for CALB1 Gene

Paralogs for CALB1 Gene

Selected SIMAP similar genes for CALB1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with CALB1: view

Variants for CALB1 Gene

Sequence variations from dbSNP and Humsavar for CALB1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs1000249 -- 90,060,266(+) GTTGT(A/G)ATATT synonymous-codon, reference
rs1800643 -- 90,060,723(+) AAATA(A/G)TATAC intron-variant
rs1800644 -- 90,060,825(+) TCTGT(A/T)ATGTC intron-variant
rs1800645 -- 90,083,245(-) TAATC(A/T)TTTAT upstream-variant-2KB
rs1801042 -- 90,059,975(-) ATTGA(A/C/G/T)AAGAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CALB1 Gene

Variant ID Type Subtype PubMed ID
nsv891183 CNV Gain 21882294
essv345 CNV CNV 17122850
essv1701 CNV CNV 17122850

Relevant External Links for CALB1 Gene

HapMap Linkage Disequilibrium report
CALB1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALB1 Gene

Disorders for CALB1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (3) Diseases for CALB1 Gene including...

Search for CALB1 Gene in MalaCards »

(3) University of Copenhagen DISEASES for CALB1 Gene

(23) Novoseek inferred disease relationships for CALB1 Gene

Disease -log(P) Hits PubMed IDs
huntington disease 48.9 8
epilepsy temporal lobe 42.4 2
neuron loss 41.6 1
gliosis 40.4 2
hiv encephalitis 36.2 1

Relevant External Links for CALB1

Genetic Association Database (GAD)
CALB1
Human Genome Epidemiology (HuGE) Navigator
CALB1
genes like me logo Genes that share disorders with CALB1: view

No data available for UniProtKB/Swiss-Prot for CALB1 Gene

Publications for CALB1 Gene

  1. Calbindin 1, fibroblast growth factor 20, and alpha-synuclein in sporadic Parkinson's disease. (PMID: 18568448) Mizuta I. … Toda T. (Hum. Genet. 2008) 3 23 48
  2. Calbindin-1 association and Parkinson's disease. (PMID: 19674066) Soto-Ortolaza A.I. … Ross O.A. (Eur. J. Neurol. 2010) 3 23 48
  3. Zn2+ binding to human calbindin D(28k) and the role of histidine residues. (PMID: 18359862) Bauer M.C. … Linse S. (Protein Sci. 2008) 3 23
  4. The human calbindin 27-kDa gene: structural organization of the 5' and 3' regions, chromosomal assignment, and restriction fragment length polymorphism. (PMID: 2565876) Parmentier M. … Vassart G. (Genomics 1989) 3 4
  5. Calbindin positive Purkinje cells in the pathology of human cerebellum occurring at the time of its development. (PMID: 20054781) Laure-Kamionowska M. … MaA9liA8ska D. (Folia Neuropathol 2009) 3 23

Products for CALB1 Gene

Sources for CALB1 Gene

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