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Aliases for CAHM Gene

Subcategory (RNA class) for CAHM Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CAHM Gene

  • Colon Adenocarcinoma Hypermethylated (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 468 2 3
  • LINC00468 3

External Ids for CAHM Gene

ORGUL Members for CAHM Gene

Previous GeneCards Identifiers for CAHM Gene

  • GC06U902263
  • GC06M163836

Summaries for CAHM Gene

GeneCards Summary for CAHM Gene

CAHM (Colon Adenocarcinoma Hypermethylated (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CAHM include Colon Adenocarcinoma.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAHM Gene

Genomics for CAHM Gene

Regulatory Elements for CAHM Gene

Enhancers for CAHM Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G163404 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.1 8144 3.3 HDGF PKNOX1 MLX ARID4B DMAP1 ZNF48 SP5 MXD4 KAT8 RFX3 QKI PACRG-AS3 CAHM LOC105378100
GH06G163408 0.9 dbSUPER 0.7 +4.3 4274 1.8 HNRNPUL1 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF548 SP5 MXD4 PACRG-AS3 CAHM LOC105378100
GH06G163411 0.8 Ensembl dbSUPER 0.7 +2.3 2260 0.2 GATAD2A DMAP1 SMAD4 ZNF652 TEAD3 CAHM LOC105378100
GH06G163396 1.1 Ensembl ENCODE dbSUPER 0.4 +17.0 16960 0.8 POLR2A HLF ZSCAN4 CEBPB POU5F1 CEBPG RBBP5 PACRG-AS3 LOC105378100 CAHM
GH06G163393 0.8 dbSUPER 0.4 +20.0 19954 0.7 CTCF ESRRA JUN CEBPG FOSL1 GATA3 CTBP1 FOS RCOR1 TRIM24 QKI PACRG-AS3 LOC105378100 CAHM
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CAHM on UCSC Golden Path with GeneCards custom track

Genomic Location for CAHM Gene

Chromosome:
6
Start:
163,413,065 bp from pter
End:
163,413,960 bp from pter
Size:
896 bases
Orientation:
Minus strand

Genomic View for CAHM Gene

Genes around CAHM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAHM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAHM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAHM Gene

Proteins for CAHM Gene

Post-translational modifications for CAHM Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAHM Gene

Domains & Families for CAHM Gene

Gene Families for CAHM Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CAHM: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAHM Gene

Function for CAHM Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAHM Gene

Localization for CAHM Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CAHM Gene

Pathways & Interactions for CAHM Gene

No Data Available

Interacting Proteins for CAHM Gene

Gene Ontology (GO) - Biological Process for CAHM Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAHM Gene

Drugs & Compounds for CAHM Gene

No Compound Related Data Available

Transcripts for CAHM Gene

mRNA/cDNA for CAHM Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CAHM Gene

Colon adenocarcinoma hypermethylated (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CAHM Gene

No ASD Table

Relevant External Links for CAHM Gene

GeneLoc Exon Structure for
CAHM
ECgene alternative splicing isoforms for
CAHM

Expression for CAHM Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CAHM Gene

mRNA differential expression in normal tissues according to GTEx for CAHM Gene

This gene is overexpressed in Nerve - Tibial (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of CAHM Gene:

CAHM

SOURCE GeneReport for Unigene cluster for CAHM Gene:

Hs.644159
genes like me logo Genes that share expression patterns with CAHM: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAHM Gene

Orthologs for CAHM Gene

Evolution for CAHM Gene

ENSEMBL:
Gene Tree for CAHM (if available)
TreeFam:
Gene Tree for CAHM (if available)

No data available for Orthologs for CAHM Gene

Paralogs for CAHM Gene

No data available for Paralogs for CAHM Gene

Variants for CAHM Gene

Sequence variations from dbSNP and Humsavar for CAHM Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000174792 -- 163,414,713(+) GAGGA(-/GGAGCGCAGTC)GGAGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000343956 -- 163,414,730(+) GAGCG(C/G)GGCGG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000479792 -- 163,414,675(+) TGAGT(-/GAGGAGGAG)GAGGA nc-transcript-variant, upstream-variant-2KB, cds-indel, utr-variant-5-prime
rs1000659882 -- 163,415,637(+) TCGGC(A/G)GTCAC intron-variant, upstream-variant-2KB
rs1000795211 -- 163,415,484(+) AGGAG(C/G)TGCCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CAHM Gene

Variant ID Type Subtype PubMed ID
dgv11024n54 CNV loss 21841781
dgv11025n54 CNV loss 21841781
dgv11026n54 CNV gain 21841781
esv26812 CNV loss 19812545
nsv605196 CNV gain+loss 21841781
nsv605200 CNV loss 21841781
nsv605204 CNV gain+loss 21841781
nsv605205 CNV gain+loss 21841781

Relevant External Links for CAHM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAHM

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CAHM Gene

Disorders for CAHM Gene

MalaCards: The human disease database

(1) MalaCards diseases for CAHM Gene - From: GeneCards

Disorder Aliases PubMed IDs
colon adenocarcinoma
  • adenocarcinoma of colon
- elite association - COSMIC cancer census association via MalaCards
Search CAHM in MalaCards View complete list of genes associated with diseases

Relevant External Links for CAHM

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CAHM
genes like me logo Genes that share disorders with CAHM: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CAHM Gene

Publications for CAHM Gene

  1. CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia. (PMID: 24799664) Pedersen S.K. … Molloy P.L. (Epigenetics 2014) 2 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for CAHM Gene

Sources for CAHM Gene

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