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Aliases for CAHM Gene

Subcategory (RNA class) for CAHM Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CAHM Gene

  • Colon Adenocarcinoma Hypermethylated (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 468 2 3
  • LINC00468 3

External Ids for CAHM Gene

ORGUL Members for CAHM Gene

Summaries for CAHM Gene

GeneCards Summary for CAHM Gene

CAHM (Colon Adenocarcinoma Hypermethylated (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class. Diseases associated with CAHM include adenocarcinoma and colon adenocarcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAHM Gene

Genomics for CAHM Gene

Genomic Location for CAHM Gene

Start:
163,413,065 bp from pter
End:
163,413,960 bp from pter
Size:
896 bases
Orientation:
Minus strand

Genomic View for CAHM Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CAHM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAHM Gene

No data available for Regulatory Elements for CAHM Gene

Proteins for CAHM Gene

Post-translational modifications for CAHM Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAHM Gene

Domains for CAHM Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for CAHM Gene

Function for CAHM Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CAHM Gene

Localization for CAHM Gene

No data available for Gene Ontology (GO) - Cellular Components for CAHM Gene

Pathways for CAHM Gene

SuperPathways for CAHM Gene

No Data Available

Interacting Proteins for CAHM Gene

Gene Ontology (GO) - Biological Process for CAHM Gene

None

No data available for Pathways by source for CAHM Gene

Transcripts for CAHM Gene

mRNA/cDNA for CAHM Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CAHM Gene

Colon adenocarcinoma hypermethylated (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CAHM Gene

No ASD Table

Relevant External Links for CAHM Gene

GeneLoc Exon Structure for
CAHM
ECgene alternative splicing isoforms for
CAHM

Expression for CAHM Gene

mRNA expression in normal human tissues for CAHM Gene

mRNA differential expression in normal tissues according to GTEx for CAHM Gene

This gene is overexpressed in Nerve - Tibial (4.3).

SOURCE GeneReport for Unigene cluster for CAHM Gene Hs.644159

genes like me logo Genes that share expressions with CAHM: view

Orthologs for CAHM Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CAHM Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia B930003M22Rik 16
Species with no ortholog for CAHM:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CAHM Gene

ENSEMBL:
Gene Tree for CAHM (if available)
TreeFam:
Gene Tree for CAHM (if available)

Paralogs for CAHM Gene

No data available for Paralogs for CAHM Gene

Variants for CAHM Gene

Sequence variations from dbSNP and Humsavar for CAHM Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs3857504 -- 163,412,578(+) TTACA(C/T)TAGCA downstream-variant-500B
rs61385143 -- 163,412,639(+) ACTTA(A/G)AGACC downstream-variant-500B
rs61407976 -- 163,412,577(+) TTTAC(C/T)TAGCA downstream-variant-500B
rs146762380 -- 163,412,580(+) ACACT(-/AGC)AGCAT downstream-variant-500B
rs528901297 -- 163,412,570(+) TGCAT(A/C)TTTTA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CAHM Gene

Variant ID Type Subtype PubMed ID
esv26812 CNV Loss 19812545

Relevant External Links for CAHM Gene

HapMap Linkage Disequilibrium report
CAHM

Disorders for CAHM Gene

genes like me logo Genes that share disorders with CAHM: view

No data available for UniProtKB/Swiss-Prot for CAHM Gene

Publications for CAHM Gene

  1. CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia. (PMID: 24799664) Pedersen S.K. … Molloy P.L. (Epigenetics 2014) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for CAHM Gene

Sources for CAHM Gene

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