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CAGE1 Gene

protein-coding   GIFtS: 41
GCID: GC06M007326

Cancer Antigen 1

(Previous name: cancer/testis antigen 3)
(Previous symbol: CTAG3)
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disease database 

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Cancer Antigen 11 2     CT952
CTAG31 2 3 5     bA69L16.72
Cancer/Testis Antigen 31 2 3     Cancer-Associated Gene 1 Protein2
Cancer/Testis Antigen 951 2     Cancer/Testis Antigen Gene 12
CT32 3     CAGE-13

External Ids:    HGNC: 216221   Entrez Gene: 2857822   Ensembl: ENSG000001643047   OMIM: 6083045   UniProtKB: Q8TC203   

Export aliases for CAGE1 gene to outside databases

Previous GC identifers: GC06M007312 GC06M007273


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CAGE1 Gene:
CAGE1 (cancer antigen 1) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the CAGE1 gene promoter:
         Pbx1a   HTF   POU3F2 (N-Oct-5a)   POU3F2 (N-Oct-5b)   POU3F2   Meis-1b   AREB6   Meis-1a   TGIF   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCAGE1 promoter sequence
   Search Chromatin IP Primers for CAGE1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CAGE1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p24.3   Ensembl cytogenetic band:  6p24.3   HGNC cytogenetic band: 6p24.3

CAGE1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CAGE1 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M007326:  view genomic region     (about GC identifiers)

Start:
7,326,887 bp from pter      End:
7,389,976 bp from pter
Size:
63,090 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CAGE1_HUMAN, Q8TC20 (See protein sequence)
Recommended Name: Cancer-associated gene 1 protein  
Size: 777 amino acids; 90250 Da
Sequence caution: Sequence=CAI16451.1; Type=Erroneous gene model prediction;
Secondary accessions: D6RCT9 Q5TAM0 Q86TM4 Q8N7R5
Alternative splicing: 5 isoforms:  Q8TC20-1   Q8TC20-2   Q8TC20-3   Q8TC20-4   Q8TC20-5   (Gene prediction based on EST data)

Explore the universe of human proteins at neXtProt for CAGE1: NX_Q8TC20

Explore proteomics data for CAGE1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CAGE1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001164163.1  NP_001164164.1  NP_995586.1  

    ENSEMBL proteins: 
     ENSP00000390644   ENSP00000369250   ENSP00000425493   ENSP00000296742   ENSP00000391746  
     ENSP00000427583   ENSP00000338107   ENSP00000423789  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: Q8TC20


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CAGE1
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    7 qRT-PCR Assays for microRNAs that regulate CAGE1:
    hsa-miR-3673 hsa-miR-206 hsa-miR-4254 hsa-miR-513a-5p hsa-miR-3662 hsa-miR-1 hsa-miR-613
    SwitchGear 3'UTR luciferase reporter plasmidCAGE1 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus3
    golgi apparatus1
    vacuole1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CAGE1
    Interactions:

        Search GeneGlobe Interaction Network for CAGE1

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CAGE1



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CAGE1 gene (4 alternative transcripts): 
    NM_175745.3  NM_001170692.1  NM_001170693.1  NM_205864.2  

    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000458291(uc003mxh.3) ENST00000379918 ENST00000502583(uc003mxl.2 uc021ylc.1 uc003mxj.3 uc003mxk.2)
    ENST00000296742 ENST00000442019 ENST00000512086 ENST00000338150 ENST00000512691
    ENST00000509324
    miRNA
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    7 qRT-PCR Assays for microRNAs that regulate CAGE1:
    hsa-miR-3673 hsa-miR-206 hsa-miR-4254 hsa-miR-513a-5p hsa-miR-3662 hsa-miR-1 hsa-miR-613
    SwitchGear 3'UTR luciferase reporter plasmidCAGE1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CAGE1
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      QuantiFast Probe-based Assays in human, mouse, rat CAGE1

    13 AceView cDNA sequences:

    AW080487 AF414185 NM_175745 NM_205864 BC026194 BI560723 AK097760 BC026188 
    BC033545 AL045637 BI559755 BI462616 BG721353 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for CAGE1    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b · 15c
    SP1:                    -                                               -                                   -                     
    SP2:                                                                                                        -                     
    SP3:                                                                    -           -                                             
    SP4:                    -     -                                   -     -           -                       -                     


    ECgene alternative splicing isoforms for CAGE1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CAGE1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGGAACCCTC
    CAGE1 Expression
    About this image


    CAGE1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Neurons
             nGnG Amacrine Cells Inner Nuclear Layer
     
     Eye (Sensory Organs)
             nGnG Amacrine Cells Inner Nuclear Layer
     
     Testis (Reproductive System)
    CAGE1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CAGE1 Protein Expression

    UniProtKB/Swiss-Prot: CAGE1_HUMAN, Q8TC20
    Tissue specificity: Testis-specific expression in normal tissues, but wide expression among cancer tissues and
    cell lines

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CAGE1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for CAGE1 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Cage11 , 5 cancer antigen 11, 5 73.15(n)1
    60.35(a)1
      13 (17.88 cM)5
    712131  NM_027724.21  NP_082000.21 
     380060525 


    ENSEMBL Gene Tree for CAGE1 (if available)
    TreeFam Gene Tree for CAGE1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CAGE1 (see all 1415)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs715428471,2
    C--7282604(+) TATGT-/AC    
       
    /ACAC
    ACACA
    3 -- int11NA 2
    rs2015843451,2
    --7326394(+) TCTGT-/CGCGCCC 2 -- ds50010--------
    rs1391061061,2
    --7326402(+) CCCAGA/GCTGGA 2 -- ds50010--------
    rs1920742971,2
    --7326442(+) AGCTCC/TGCCTC 2 -- ds50010--------
    rs69088011,2
    C,A--7326481(+) CCTCCC/TGAGTA 2 -- ds50011Minor allele frequency- T:0.50NA 2
    rs1853908831,2
    --7326491(+) AGCTGC/GGACTA 2 -- ds50010--------
    rs95051591,2
    C,F--7326501(+) acaggC/Tgcccc 2 -- ds50011Minor allele frequency- T:0.50CSA 2
    rs95051601,2
    C,F,H--7326576(+) GATGGT/CCTCGA 2 -- ds50013Minor allele frequency- C:0.33NA CSA 6
    rs752583751,2
    C--7326591(+) CTGACA/CTCATG 2 -- ds50010--------
    rs95051611,2
    C,F,H--7326594(+) ACCTCG/ATGATC 2 -- ds50012Minor allele frequency- A:0.50NA CSA 4

    HapMap Linkage Disequilibrium report for CAGE1 (7326887 - 7389976 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for CAGE1:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv883433CNV Gain21882294
    nsv462623CNV Gain19166990
    nsv470797CNV Gain18288195

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing CAGE1
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 608304    OMIM disorders: --


    Find genes that share disorders with CAGE1           About GenesLikeMe


    Export disorders for CAGE1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CAGE1 gene, integrated from 10 sources (see all 14):
    (articles sorted by number of sources associating them with CAGE1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of a novel cancer/testis antigen gene CAGE-1. (PubMed id 12531476)1, 2, 3 Park S.... Jeoung D.I. (Biochim. Biophys. Acta 2003)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (Nature 2003)
    5. miR-200b and cancer/testis antigen CAGE form a feedback loop to regulate the invasion and tumorigenic and angiogenic responses of a cancer cell line to microtubule-targeting drugs. (PubMed id 24174534)1 Kim Y....Jeoung D. (J. Biol. Chem. 2013)
    6. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    7. High frequency of promoter methylation of the 14-3-3 sigma and CAGE-1 genes, but lack of hypermethylation of the caveolin-1 gene, in primary adenocarcinomas and signet ring cell carcinomas of the urinary bladder. (PubMed id 17786288)1 Kunze E. and Schlott T. (Int. J. Mol. Med. 2007)
    8. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. (PubMed id 17114284)1 Parmigiani R.B....Camargo A.A. (Proc. Natl. Acad. Sci. U.S.A. 2006)
    9. Promoter hypermethylation of the 14-3-3 sigma, SYK and CAGE-1 genes is related to the various phenotypes of urinary bladder carcinomas and associated with progression of transitional cell carcinomas. (PubMed id 16964403)1 Kunze E....Schlott T. (Int. J. Mol. Med. 2006)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 285782 HGNC: 21622 AceView: CTAG3 Ensembl:ENSG00000164304 euGenes: HUgn285782
    ECgene: CAGE1 H-InvDB: CAGE1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CAGE1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CAGE1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CAGE1 gene:
    Search GeneIP for patents involving CAGE1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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