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Aliases for CADM3-AS1 Gene

Subcategory (RNA class) for CADM3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CADM3-AS1 Gene

  • CADM3 Antisense RNA 1 2 3 5
  • CTA-134P22.2 3

External Ids for CADM3-AS1 Gene

Summaries for CADM3-AS1 Gene

GeneCards Summary for CADM3-AS1 Gene

CADM3-AS1 (CADM3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CADM3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CADM3-AS1 Gene

Genomics for CADM3-AS1 Gene

Regulatory Elements for CADM3-AS1 Gene

Enhancers for CADM3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H159004 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10 +196.9 196901 12 HDGF PKNOX1 ATF1 SIN3A YY1 TCF12 ZNF766 GATA2 ELK1 ZNF207 IFI16 OR6N2 CADM3-AS1 RAD1P2 ACKR1 AIM2 PYHIN1 GC01M159011
GH01H159881 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -674.2 -674163 1 PKNOX1 ATF7 FOS DEK ZNF491 ZNF518A ZNF592 MAFF SMARCA4 GLIS1 RPSAP18 ENSG00000272668 SNHG28 LOC100287049 COPA SLAMF8 PIGM DCAF8 CADM3 CADM3-AS1
GH01H160187 1.5 Ensembl ENCODE dbSUPER 9.8 -982.8 -982805 6 HDGF ATF1 ARNT ZNF133 ARID4B DMAP1 GLI4 ZNF2 GLIS2 ZNF143 USP21 LOC100287049 PPOX LOC729867 NCSTN CASQ1 SNHG28 RPSAP18 SLAMF8 B4GALT3
GH01H159172 1 FANTOM5 Ensembl ENCODE 11.1 +34.9 34890 1 CTBP2 EBF1 EZH2 ACKR1 CADM3-AS1 AIM2 ENSG00000212161 OR10J3 CADM3 OR6N1 OR6K3 FCER1A OR6N2
GH01H159141 0.9 FANTOM5 Ensembl 11.3 +66.0 65985 0 TBP MXI1 JUND POLR3A ZBTB48 POLR2A FOS PRDM10 TCF7L2 OR6K3 OR6N1 FCER1A CADM3 ACKR1 CADM3-AS1 OR6N2 OR10J5 AIM2 OR10J1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CADM3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CADM3-AS1 Gene

Chromosome:
1
Start:
159,194,325 bp from pter
End:
159,207,973 bp from pter
Size:
13,649 bases
Orientation:
Minus strand

Genomic View for CADM3-AS1 Gene

Genes around CADM3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CADM3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CADM3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CADM3-AS1 Gene

Proteins for CADM3-AS1 Gene

Post-translational modifications for CADM3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CADM3-AS1 Gene

Domains & Families for CADM3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CADM3-AS1 Gene

Function for CADM3-AS1 Gene

Phenotypes From GWAS Catalog for CADM3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CADM3-AS1 Gene

Localization for CADM3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CADM3-AS1 Gene

Pathways & Interactions for CADM3-AS1 Gene

SuperPathways for CADM3-AS1 Gene

No Data Available

Interacting Proteins for CADM3-AS1 Gene

Gene Ontology (GO) - Biological Process for CADM3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CADM3-AS1 Gene

Drugs & Compounds for CADM3-AS1 Gene

No Compound Related Data Available

Transcripts for CADM3-AS1 Gene

mRNA/cDNA for CADM3-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CADM3-AS1 Gene

No ASD Table

Relevant External Links for CADM3-AS1 Gene

GeneLoc Exon Structure for
CADM3-AS1
ECgene alternative splicing isoforms for
CADM3-AS1

Expression for CADM3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CADM3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CADM3-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.1) and Brain - Cerebellum (x6.0).
genes like me logo Genes that share expression patterns with CADM3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CADM3-AS1 Gene

Orthologs for CADM3-AS1 Gene

Evolution for CADM3-AS1 Gene

ENSEMBL:
Gene Tree for CADM3-AS1 (if available)
TreeFam:
Gene Tree for CADM3-AS1 (if available)

No data available for Orthologs for CADM3-AS1 Gene

Paralogs for CADM3-AS1 Gene

No data available for Paralogs for CADM3-AS1 Gene

Variants for CADM3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CADM3-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000157237 -- 159,203,016(+) GTGTG(G/T)GTCTG upstream-variant-2KB, utr-variant-3-prime
rs1000194263 -- 159,203,818(+) ACAGT(A/G)ACGAT upstream-variant-2KB
rs1000373017 -- 159,203,238(+) GTGCC(C/T)CAAAA upstream-variant-2KB, utr-variant-3-prime
rs1000393404 -- 159,200,800(+) TCTAC(A/C)CAGGA intron-variant
rs1000488956 -- 159,204,257(+) CAGAC(C/T)TAGAG upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for CADM3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CADM3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CADM3-AS1 Gene

Disorders for CADM3-AS1 Gene

Relevant External Links for CADM3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CADM3-AS1

No disorders were found for CADM3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CADM3-AS1 Gene

Publications for CADM3-AS1 Gene

  1. Bivariate genome-wide association study suggests that the DARC gene influences lean body mass and age at menarche. (PMID: 22744181) Hai R … Deng H (Science China. Life sciences 2012) 3 60
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 60
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 60

Products for CADM3-AS1 Gene

Sources for CADM3-AS1 Gene

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