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Aliases for CADM1 Gene

Aliases for CADM1 Gene

  • Cell Adhesion Molecule 1 2 3
  • Tumor Suppressor In Lung Cancer 1 2 3 4
  • Spermatogenic Immunoglobulin Superfamily 3 4
  • Immunoglobulin Superfamily, Member 4 2 3
  • Immunoglobulin Superfamily Member 4 3 4
  • Synaptic Cell Adhesion Molecule 3 4
  • Nectin-Like Protein 2 3 4
  • Nectin-Like 2 2 3
  • Necl-2 3 4
  • SgIGSF 3 4
  • IGSF4A 3 4
  • SYNCAM 3 4
  • TSLC-1 3 4
  • IGSF4 3 4
  • TSLC1 3 4
  • NECL2 3 4
  • Immunoglobulin Superfamily, Member 4D Variant 1 3
  • Immunoglobulin Superfamily, Member 4D Variant 2 3
  • TSLC1/Nectin-Like 2/IGSF4 3
  • Truncated CADM1 Protein 3
  • STSLC-1 3
  • SynCAM1 3
  • RA175 3
  • ST17 3
  • BL2 3

External Ids for CADM1 Gene

Previous HGNC Symbols for CADM1 Gene

  • TSLC1
  • IGSF4

Previous GeneCards Identifiers for CADM1 Gene

  • GC11M114551
  • GC11M115044
  • GC11M110979

Summaries for CADM1 Gene

GeneCards Summary for CADM1 Gene

CADM1 (Cell Adhesion Molecule 1) is a Protein Coding gene. Diseases associated with CADM1 include retroperitoneal fibrosis and asthenopia. Among its related pathways are Cell junction organization and Cell adhesion molecules (CAMs). GO annotations related to this gene include protein homodimerization activity and PDZ domain binding. An important paralog of this gene is CADM3.

UniProtKB/Swiss-Prot for CADM1 Gene

  • Mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Also mediates heterophilic cell-cell adhesion with CADM3 and PVRL3 in a Ca(2+)-independent manner. Acts as a tumor suppressor in non-small-cell lung cancer (NSCLC) cells. Interaction with CRTAM promotes natural killer (NK) cell cytotoxicity and interferon-gamma (IFN-gamma) secretion by CD8+ cells in vitro as well as NK cell-mediated rejection of tumors expressing CADM3 in vivo. May contribute to the less invasive phenotypes of lepidic growth tumor cells. In mast cells, may mediate attachment to and promote communication with nerves. CADM1, together with MITF, is essential for development and survival of mast cells in vivo. Acts as a synaptic cell adhesion molecule and plays a role in the formation of dendritic spines and in synapse assembly (By similarity). May be involved in neuronal migration, axon growth, pathfinding, and fasciculation on the axons of differentiating neurons. May play diverse roles in the spermatogenesis including in the adhesion of spermatocytes and spermatids to Sertoli cells and for their normal differentiation into mature spermatozoa.

Gene Wiki entry for CADM1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CADM1 Gene

Genomics for CADM1 Gene

Regulatory Elements for CADM1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CADM1 Gene

Chromosome:
11
Start:
115,169,218 bp from pter
End:
115,504,957 bp from pter
Size:
335,740 bases
Orientation:
Minus strand

Genomic View for CADM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CADM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CADM1 Gene

Proteins for CADM1 Gene

  • Protein details for CADM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BY67-CADM1_HUMAN
    Recommended name:
    Cell adhesion molecule 1
    Protein Accession:
    Q9BY67
    Secondary Accessions:
    • A4FVB5
    • F5H0J4
    • H0YGA7
    • H1ZZV9
    • H1ZZW1
    • H1ZZW2
    • Q86WB8
    • Q8N2F4
    • X5D2C8

    Protein attributes for CADM1 Gene

    Size:
    442 amino acids
    Molecular mass:
    48509 Da
    Quaternary structure:
    • Homodimer. Interacts with FARP1 (By similarity). Interacts with CRTAM. Interacts (via C-terminus) with EPB41L3/DAL1. The interaction with EPB41L3/DAL1 may act to anchor CADM1 to the actin cytoskeleton. Interacts via its C-terminus with the PDZ domain of MPP3 and the PDZ domain of MPP6.
    SequenceCaution:
    • Sequence=AAI25103.1; Type=Frameshift; Positions=1; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for CADM1 Gene

    Alternative splice isoforms for CADM1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CADM1 Gene

Proteomics data for CADM1 Gene at MOPED

Post-translational modifications for CADM1 Gene

  • Glycosylation at Asn-67 and Asn-101 promotes adhesive binding and synapse induction.
  • Glycosylation at Asn 67, Asn 101, Asn 113, Asn 165, Asn 301, Asn 302, Asn 304, and Asn 308
  • Modification sites at PhosphoSitePlus

Antibody Products

  • R&D Systems Antibodies for CADM1 (IGSF4A/SynCAM1)

No data available for DME Specific Peptides for CADM1 Gene

Domains & Families for CADM1 Gene

Suggested Antigen Peptide Sequences for CADM1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BY67

UniProtKB/Swiss-Prot:

CADM1_HUMAN :
  • The cytoplasmic domain appears to play a critical role in proapoptosis and tumor suppressor activity in NSCLC.
  • Belongs to the nectin family.
Domain:
  • The cytoplasmic domain appears to play a critical role in proapoptosis and tumor suppressor activity in NSCLC.
  • Contains 2 Ig-like C2-type (immunoglobulin-like) domains.
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.
Family:
  • Belongs to the nectin family.
genes like me logo Genes that share domains with CADM1: view

Function for CADM1 Gene

Molecular function for CADM1 Gene

UniProtKB/Swiss-Prot Function:
Mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Also mediates heterophilic cell-cell adhesion with CADM3 and PVRL3 in a Ca(2+)-independent manner. Acts as a tumor suppressor in non-small-cell lung cancer (NSCLC) cells. Interaction with CRTAM promotes natural killer (NK) cell cytotoxicity and interferon-gamma (IFN-gamma) secretion by CD8+ cells in vitro as well as NK cell-mediated rejection of tumors expressing CADM3 in vivo. May contribute to the less invasive phenotypes of lepidic growth tumor cells. In mast cells, may mediate attachment to and promote communication with nerves. CADM1, together with MITF, is essential for development and survival of mast cells in vivo. Acts as a synaptic cell adhesion molecule and plays a role in the formation of dendritic spines and in synapse assembly (By similarity). May be involved in neuronal migration, axon growth, pathfinding, and fasciculation on the axons of differentiating neurons. May play diverse roles in the spermatogenesis including in the adhesion of spermatocytes and spermatids to Sertoli cells and for their normal differentiation into mature spermatozoa.

Gene Ontology (GO) - Molecular Function for CADM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004872 receptor activity IBA --
GO:0005102 receptor binding ISS 12826663
GO:0005515 protein binding IPI 12234973
GO:0030165 PDZ domain binding ISS 12826663
GO:0042803 protein homodimerization activity ISS 12826663
genes like me logo Genes that share ontologies with CADM1: view
genes like me logo Genes that share phenotypes with CADM1: view

Animal Models for CADM1 Gene

MGI Knock Outs for CADM1:

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CADM1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for CADM1 Gene

Localization for CADM1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CADM1 Gene

Cell membrane; Single-pass type I membrane protein. Cell junction, synapse. Note=Associates with perinuclear and plasma membranes in vivo. Localized to the basolateral plasma membrane of epithelial cells in gall bladder. {ECO:0000250 UniProtKB:Q8R5M8, ECO:0000255, ECO:0000269 PubMed:11279526}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CADM1 Gene COMPARTMENTS Subcellular localization image for CADM1 gene
Compartment Confidence
extracellular 5
plasma membrane 5
cytoskeleton 2
nucleus 2
cytosol 1

Gene Ontology (GO) - Cellular Components for CADM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane IBA --
GO:0005911 cell-cell junction ISS 12826663
GO:0005913 cell-cell adherens junction IBA --
GO:0008021 synaptic vesicle --
genes like me logo Genes that share ontologies with CADM1: view

Pathways & Interactions for CADM1 Gene

genes like me logo Genes that share pathways with CADM1: view

PCR Array Products

Gene Ontology (GO) - Biological Process for CADM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001889 liver development --
GO:0001913 NOT T cell mediated cytotoxicity IDA 15811952
GO:0006915 apoptotic process IEA --
GO:0007155 cell adhesion --
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules ISS 12826663
genes like me logo Genes that share ontologies with CADM1: view

No data available for SIGNOR curated interactions for CADM1 Gene

Drugs & Compounds for CADM1 Gene

(1) Additional Compounds for CADM1 Gene - From: NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
5-Aza-2deoxycytidine
genes like me logo Genes that share compounds with CADM1: view

Transcripts for CADM1 Gene

Unigene Clusters for CADM1 Gene

Cell adhesion molecule 1:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CADM1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CADM1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b · 14c · 14d
SP1: - - - - - - -
SP2: - - - - - - - -
SP3: - -
SP4: - - - -
SP5: - - -
SP6: -
SP7:
SP8:
SP9:

Relevant External Links for CADM1 Gene

GeneLoc Exon Structure for
CADM1
ECgene alternative splicing isoforms for
CADM1

Expression for CADM1 Gene

mRNA expression in normal human tissues for CADM1 Gene

mRNA differential expression in normal tissues according to GTEx for CADM1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.3).

Protein differential expression in normal tissues from HIPED for CADM1 Gene

This gene is overexpressed in Retina (11.8), Serum (9.6), Testis (7.2), Brain (6.5), and Fetal Brain (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CADM1 Gene



SOURCE GeneReport for Unigene cluster for CADM1 Gene Hs.370510

genes like me logo Genes that share expression patterns with CADM1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CADM1 Gene

Orthologs for CADM1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CADM1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CADM1 35
  • 93.72 (n)
  • 98.55 (a)
CADM1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CADM1 35
  • 90.05 (n)
  • 93.44 (a)
CADM1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cadm1 35
  • 92.76 (n)
  • 98.64 (a)
Cadm1 16
Cadm1 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CADM1 35
  • 96.61 (n)
  • 95.93 (a)
CADM1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cadm1 35
  • 91.86 (n)
  • 96.61 (a)
oppossum
(Monodelphis domestica)
Mammalia CADM1 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CADM1 36
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves CADM1 35
  • 80.7 (n)
  • 84.46 (a)
CADM1 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CADM1 36
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cadm1 35
  • 66.34 (n)
  • 70.05 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.14858 35
zebrafish
(Danio rerio)
Actinopterygii cadm1b 35
  • 68.39 (n)
  • 70.03 (a)
cadm1a 36
  • 61 (a)
OneToMany
cadm1b 36
  • 69 (a)
OneToMany
Species with no ortholog for CADM1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CADM1 Gene

ENSEMBL:
Gene Tree for CADM1 (if available)
TreeFam:
Gene Tree for CADM1 (if available)

Paralogs for CADM1 Gene

Paralogs for CADM1 Gene

genes like me logo Genes that share paralogs with CADM1: view

Variants for CADM1 Gene

Sequence variations from dbSNP and Humsavar for CADM1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs160604 -- 115,447,872(-) aggta(G/T)tattg intron-variant
rs170221 -- 115,404,834(-) ggcag(A/G)gtctt intron-variant
rs170222 -- 115,429,433(-) GTAGA(A/G)ATGGG intron-variant
rs170223 -- 115,440,854(-) CTGCA(A/G)TGACT intron-variant
rs170224 -- 115,387,315(+) AAAGC(A/T)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CADM1 Gene

Variant ID Type Subtype PubMed ID
nsv468871 CNV Loss 19166990
nsv502 CNV Insertion 18451855
esv1078257 CNV Insertion 17803354
esv7788 CNV Gain 19470904
nsv832278 CNV Gain 17160897
esv2659168 CNV Deletion 23128226
nsv525753 CNV Loss 19592680

Variation tolerance for CADM1 Gene

Residual Variation Intolerance Score: 15.49% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.39; 54.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CADM1 Gene

HapMap Linkage Disequilibrium report
CADM1
Human Gene Mutation Database (HGMD)
CADM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CADM1 Gene

Disorders for CADM1 Gene

MalaCards: The human disease database

(16) MalaCards diseases for CADM1 Gene - From: DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
retroperitoneal fibrosis
  • idiopathic retroperitoneal fibrosis
asthenopia
  • accommodative asthenopia
autoimmune pancreatitis
  • aip
acute myeloid leukemia with t(9;11)(p22;q23)
  • aml with t(9;11)(p22;q23)
disuse amblyopia
  • deprivation amblyopia
- elite association
Search CADM1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CADM1

Genetic Association Database (GAD)
CADM1
Human Genome Epidemiology (HuGE) Navigator
CADM1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CADM1
genes like me logo Genes that share disorders with CADM1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CADM1 Gene

Publications for CADM1 Gene

  1. A 2-Mb sequence-ready contig map and a novel immunoglobulin superfamily gene IGSF4 in the LOH region of chromosome 11q23.2. (PMID: 10610705) Gomyo H. … Ohki M. (Genomics 1999) 2 23 67
  2. TSLC1 gene silencing in cutaneous melanoma. (PMID: 20375924) You Y. … Li Z.Y. (Melanoma Res. 2010) 23 67
  3. Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia. (PMID: 19897574) Kanduri M. … Rosenquist R. (Blood 2010) 23 67
  4. Bmi1 is a MYCN target gene that regulates tumorigenesis through repression of KIF1Bbeta and TSLC1 in neuroblastoma. (PMID: 20190806) Ochiai H. … Kamijo T. (Oncogene 2010) 23 67
  5. The minimal Tumor Suppressor in Lung Cancer-1 promoter is restrained by an inhibitory region. (PMID: 19653122) Hori R.T. (Mol. Biol. Rep. 2010) 23 67

Products for CADM1 Gene

Sources for CADM1 Gene

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