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Aliases for CACYBPP3 Gene

Subcategory (RNA class) for CACYBPP3 Gene

lncRNA

Aliases for CACYBPP3 Gene

  • Calcyclin Binding Protein Pseudogene 3 2 3 5

External Ids for CACYBPP3 Gene

ORGUL Members for CACYBPP3 Gene

Previous GeneCards Identifiers for CACYBPP3 Gene

  • GC06M158936

Summaries for CACYBPP3 Gene

GeneCards Summary for CACYBPP3 Gene

CACYBPP3 (Calcyclin Binding Protein Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACYBPP3 Gene

Genomics for CACYBPP3 Gene

Regulatory Elements for CACYBPP3 Gene

Enhancers for CACYBPP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G158517 1.3 Ensembl ENCODE 0.7 -2.3 -2255 1.6 FOXA2 ARID4B YBX1 ZNF2 ZNF121 GLIS2 CBX5 ZNF143 FOS KLF13 DYNLT1 CACYBPP3 TMEM181
GH06G158474 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +40.7 40684 2.6 HDGF PKNOX1 GLIS2 ZNF207 FOS ZNF263 SP3 JUNB TBX21 MEF2D ENSG00000238019 DYNLT1 SYTL3 SERAC1 RN7SL173P CACYBPP3
GH06G158498 1 ENCODE dbSUPER 0.4 +16.2 16192 3.0 HINFP DDX20 CEBPG ZNF384 RELA IRF9 ZNF316 SCRT2 NFE2 L3MBTL2 ENSG00000238019 SYNJ2 CACYBPP3 RN7SL173P
GH06G158487 1.2 Ensembl ENCODE dbSUPER 0.3 +27.9 27903 1.8 MXI1 JUN BHLHE40 SIN3A ZNF121 ARID3A JUND ZNF316 SMARCA4 FOS ENSG00000238019 CACYBPP3 RN7SL173P
GH06G158481 1.1 Ensembl ENCODE dbSUPER 0.3 +34.2 34231 1.3 JUN BHLHE40 GFI1B JUND FOXP2 FOS ZNF600 NFE2L2 ENSG00000238019 CACYBPP3 RN7SL173P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACYBPP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACYBPP3 Gene

Chromosome:
6
Start:
158,515,605 bp from pter
End:
158,516,229 bp from pter
Size:
625 bases
Orientation:
Minus strand

Genomic View for CACYBPP3 Gene

Genes around CACYBPP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACYBPP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACYBPP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACYBPP3 Gene

Proteins for CACYBPP3 Gene

Post-translational modifications for CACYBPP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACYBPP3 Gene

Domains & Families for CACYBPP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACYBPP3 Gene

Function for CACYBPP3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACYBPP3 Gene

Localization for CACYBPP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACYBPP3 Gene

Pathways & Interactions for CACYBPP3 Gene

SuperPathways for CACYBPP3 Gene

No Data Available

Interacting Proteins for CACYBPP3 Gene

Gene Ontology (GO) - Biological Process for CACYBPP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACYBPP3 Gene

Drugs & Compounds for CACYBPP3 Gene

No Compound Related Data Available

Transcripts for CACYBPP3 Gene

mRNA/cDNA for CACYBPP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CACYBPP3 Gene

No ASD Table

Relevant External Links for CACYBPP3 Gene

GeneLoc Exon Structure for
CACYBPP3
ECgene alternative splicing isoforms for
CACYBPP3

Expression for CACYBPP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACYBPP3 Gene

mRNA differential expression in normal tissues according to GTEx for CACYBPP3 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x12.9), Brain - Putamen (basal ganglia) (x10.2), and Brain - Caudate (basal ganglia) (x6.9).

NURSA nuclear receptor signaling pathways regulating expression of CACYBPP3 Gene:

CACYBPP3
genes like me logo Genes that share expression patterns with CACYBPP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACYBPP3 Gene

Orthologs for CACYBPP3 Gene

Evolution for CACYBPP3 Gene

ENSEMBL:
Gene Tree for CACYBPP3 (if available)
TreeFam:
Gene Tree for CACYBPP3 (if available)

No data available for Orthologs for CACYBPP3 Gene

Paralogs for CACYBPP3 Gene

No data available for Paralogs for CACYBPP3 Gene

Variants for CACYBPP3 Gene

Relevant External Links for CACYBPP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACYBPP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CACYBPP3 Gene

Disorders for CACYBPP3 Gene

No disorders were found for CACYBPP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CACYBPP3 Gene

Publications for CACYBPP3 Gene

No publications were found for CACYBPP3 Gene.

Products for CACYBPP3 Gene

Sources for CACYBPP3 Gene

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